data_1VTM # _entry.id 1VTM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VTM pdb_00001vtm 10.2210/pdb1vtm/pdb WWPDB D_1000177119 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-07-31 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-11-29 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' 4 4 'Structure model' Other 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_status 2 4 'Structure model' struct_conf 3 4 'Structure model' struct_conf_type 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_struct_oper_list 8 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_database_status.process_site' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_struct_oper_list.name' 5 5 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 6 5 'Structure model' '_pdbx_struct_oper_list.type' 7 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VTM _pdbx_database_status.recvd_initial_deposition_date 1992-03-30 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stubbs, G.' 1 'Pattanayek, R.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure of the U2 strain of tobacco mosaic virus refined at 3.5 A resolution using X-ray fiber diffraction.' J.Mol.Biol. 228 516 528 1992 JMOBAK UK 0022-2836 0070 ? 1453461 '10.1016/0022-2836(92)90839-C' 1 'Molecular Dynamics in Refinement Against Fiber Diffraction Data' 'Acta Crystallogr.,Sect.A' 49 504 ? 1993 ACACEQ DK 0108-7673 0621 ? ? ? 2 'Application of Restrained Least-Squares Refinement to Fiber Diffraction from Macromolecular Assemblies' Biophys.J. 49 58 ? 1986 BIOJAU US 0006-3495 0030 ? ? ? 3 'Solving the Phase Problem in Fiber Diffraction. Application to Tobacco Mosaic Virus at 3.6 Angstroms Resolution' 'Acta Crystallogr.,Sect.A' 41 252 ? 1985 ACACEQ DK 0108-7673 0621 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pattanayek, R.' 1 ? primary 'Stubbs, G.' 2 ? 1 'Wang, H.' 3 ? 1 'Stubbs, G.' 4 ? 2 'Stubbs, G.' 5 ? 2 'Namba, K.' 6 ? 2 'Makowski, L.' 7 ? 3 'Namba, K.' 8 ? 3 'Stubbs, G.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(P*GP*AP*A)-3') ; 958.660 1 ? ? ? ? 2 polymer man 'Coat protein' 17467.326 1 ? ? ? ? 3 water nat water 18.015 8 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GAA GAA R ? 2 'polypeptide(L)' no no ;PYTINSPSQFVYLSSAYADPVELINLCTNALGNQFQTQQARTTVQQQFADAWKPSPVMTVRFPASDFYVYRYNSTLDPLI TALLNSFDTRNRIIEVNNQPAPNTTEIVNATQRVDDATVAIRASINNLANELVRGTGMFNQAGFETASGLVWTTTPAT ; ;PYTINSPSQFVYLSSAYADPVELINLCTNALGNQFQTQQARTTVQQQFADAWKPSPVMTVRFPASDFYVYRYNSTLDPLI TALLNSFDTRNRIIEVNNQPAPNTTEIVNATQRVDDATVAIRASINNLANELVRGTGMFNQAGFETASGLVWTTTPAT ; P ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 A n 2 1 PRO n 2 2 TYR n 2 3 THR n 2 4 ILE n 2 5 ASN n 2 6 SER n 2 7 PRO n 2 8 SER n 2 9 GLN n 2 10 PHE n 2 11 VAL n 2 12 TYR n 2 13 LEU n 2 14 SER n 2 15 SER n 2 16 ALA n 2 17 TYR n 2 18 ALA n 2 19 ASP n 2 20 PRO n 2 21 VAL n 2 22 GLU n 2 23 LEU n 2 24 ILE n 2 25 ASN n 2 26 LEU n 2 27 CYS n 2 28 THR n 2 29 ASN n 2 30 ALA n 2 31 LEU n 2 32 GLY n 2 33 ASN n 2 34 GLN n 2 35 PHE n 2 36 GLN n 2 37 THR n 2 38 GLN n 2 39 GLN n 2 40 ALA n 2 41 ARG n 2 42 THR n 2 43 THR n 2 44 VAL n 2 45 GLN n 2 46 GLN n 2 47 GLN n 2 48 PHE n 2 49 ALA n 2 50 ASP n 2 51 ALA n 2 52 TRP n 2 53 LYS n 2 54 PRO n 2 55 SER n 2 56 PRO n 2 57 VAL n 2 58 MET n 2 59 THR n 2 60 VAL n 2 61 ARG n 2 62 PHE n 2 63 PRO n 2 64 ALA n 2 65 SER n 2 66 ASP n 2 67 PHE n 2 68 TYR n 2 69 VAL n 2 70 TYR n 2 71 ARG n 2 72 TYR n 2 73 ASN n 2 74 SER n 2 75 THR n 2 76 LEU n 2 77 ASP n 2 78 PRO n 2 79 LEU n 2 80 ILE n 2 81 THR n 2 82 ALA n 2 83 LEU n 2 84 LEU n 2 85 ASN n 2 86 SER n 2 87 PHE n 2 88 ASP n 2 89 THR n 2 90 ARG n 2 91 ASN n 2 92 ARG n 2 93 ILE n 2 94 ILE n 2 95 GLU n 2 96 VAL n 2 97 ASN n 2 98 ASN n 2 99 GLN n 2 100 PRO n 2 101 ALA n 2 102 PRO n 2 103 ASN n 2 104 THR n 2 105 THR n 2 106 GLU n 2 107 ILE n 2 108 VAL n 2 109 ASN n 2 110 ALA n 2 111 THR n 2 112 GLN n 2 113 ARG n 2 114 VAL n 2 115 ASP n 2 116 ASP n 2 117 ALA n 2 118 THR n 2 119 VAL n 2 120 ALA n 2 121 ILE n 2 122 ARG n 2 123 ALA n 2 124 SER n 2 125 ILE n 2 126 ASN n 2 127 ASN n 2 128 LEU n 2 129 ALA n 2 130 ASN n 2 131 GLU n 2 132 LEU n 2 133 VAL n 2 134 ARG n 2 135 GLY n 2 136 THR n 2 137 GLY n 2 138 MET n 2 139 PHE n 2 140 ASN n 2 141 GLN n 2 142 ALA n 2 143 GLY n 2 144 PHE n 2 145 GLU n 2 146 THR n 2 147 ALA n 2 148 SER n 2 149 GLY n 2 150 LEU n 2 151 VAL n 2 152 TRP n 2 153 THR n 2 154 THR n 2 155 THR n 2 156 PRO n 2 157 ALA n 2 158 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CP _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain U2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Tobacco mild green mosaic virus (TMGMV)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12241 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G R . n A 1 2 A 2 2 2 A A R . n A 1 3 A 3 3 3 A A R . n B 2 1 PRO 1 1 1 PRO PRO P . n B 2 2 TYR 2 2 2 TYR TYR P . n B 2 3 THR 3 3 3 THR THR P . n B 2 4 ILE 4 4 4 ILE ILE P . n B 2 5 ASN 5 5 5 ASN ASN P . n B 2 6 SER 6 6 6 SER SER P . n B 2 7 PRO 7 7 7 PRO PRO P . n B 2 8 SER 8 8 8 SER SER P . n B 2 9 GLN 9 9 9 GLN GLN P . n B 2 10 PHE 10 10 10 PHE PHE P . n B 2 11 VAL 11 11 11 VAL VAL P . n B 2 12 TYR 12 12 12 TYR TYR P . n B 2 13 LEU 13 13 13 LEU LEU P . n B 2 14 SER 14 14 14 SER SER P . n B 2 15 SER 15 15 15 SER SER P . n B 2 16 ALA 16 16 16 ALA ALA P . n B 2 17 TYR 17 17 17 TYR TYR P . n B 2 18 ALA 18 18 18 ALA ALA P . n B 2 19 ASP 19 19 19 ASP ASP P . n B 2 20 PRO 20 20 20 PRO PRO P . n B 2 21 VAL 21 21 21 VAL VAL P . n B 2 22 GLU 22 22 22 GLU GLU P . n B 2 23 LEU 23 23 23 LEU LEU P . n B 2 24 ILE 24 24 24 ILE ILE P . n B 2 25 ASN 25 25 25 ASN ASN P . n B 2 26 LEU 26 26 26 LEU LEU P . n B 2 27 CYS 27 27 27 CYS CYS P . n B 2 28 THR 28 28 28 THR THR P . n B 2 29 ASN 29 29 29 ASN ASN P . n B 2 30 ALA 30 30 30 ALA ALA P . n B 2 31 LEU 31 31 31 LEU LEU P . n B 2 32 GLY 32 32 32 GLY GLY P . n B 2 33 ASN 33 33 33 ASN ASN P . n B 2 34 GLN 34 34 34 GLN GLN P . n B 2 35 PHE 35 35 35 PHE PHE P . n B 2 36 GLN 36 36 36 GLN GLN P . n B 2 37 THR 37 37 37 THR THR P . n B 2 38 GLN 38 38 38 GLN GLN P . n B 2 39 GLN 39 39 39 GLN GLN P . n B 2 40 ALA 40 40 40 ALA ALA P . n B 2 41 ARG 41 41 41 ARG ARG P . n B 2 42 THR 42 42 42 THR THR P . n B 2 43 THR 43 43 43 THR THR P . n B 2 44 VAL 44 44 44 VAL VAL P . n B 2 45 GLN 45 45 45 GLN GLN P . n B 2 46 GLN 46 46 46 GLN GLN P . n B 2 47 GLN 47 47 47 GLN GLN P . n B 2 48 PHE 48 48 48 PHE PHE P . n B 2 49 ALA 49 49 49 ALA ALA P . n B 2 50 ASP 50 50 50 ASP ASP P . n B 2 51 ALA 51 51 51 ALA ALA P . n B 2 52 TRP 52 52 52 TRP TRP P . n B 2 53 LYS 53 53 53 LYS LYS P . n B 2 54 PRO 54 54 54 PRO PRO P . n B 2 55 SER 55 55 55 SER SER P . n B 2 56 PRO 56 56 56 PRO PRO P . n B 2 57 VAL 57 57 57 VAL VAL P . n B 2 58 MET 58 58 58 MET MET P . n B 2 59 THR 59 59 59 THR THR P . n B 2 60 VAL 60 60 60 VAL VAL P . n B 2 61 ARG 61 61 61 ARG ARG P . n B 2 62 PHE 62 62 62 PHE PHE P . n B 2 63 PRO 63 63 63 PRO PRO P . n B 2 64 ALA 64 64 64 ALA ALA P . n B 2 65 SER 65 65 65 SER SER P . n B 2 66 ASP 66 66 66 ASP ASP P . n B 2 67 PHE 67 67 67 PHE PHE P . n B 2 68 TYR 68 68 68 TYR TYR P . n B 2 69 VAL 69 69 69 VAL VAL P . n B 2 70 TYR 70 70 70 TYR TYR P . n B 2 71 ARG 71 71 71 ARG ARG P . n B 2 72 TYR 72 72 72 TYR TYR P . n B 2 73 ASN 73 73 73 ASN ASN P . n B 2 74 SER 74 74 74 SER SER P . n B 2 75 THR 75 75 75 THR THR P . n B 2 76 LEU 76 76 76 LEU LEU P . n B 2 77 ASP 77 77 77 ASP ASP P . n B 2 78 PRO 78 78 78 PRO PRO P . n B 2 79 LEU 79 79 79 LEU LEU P . n B 2 80 ILE 80 80 80 ILE ILE P . n B 2 81 THR 81 81 81 THR THR P . n B 2 82 ALA 82 82 82 ALA ALA P . n B 2 83 LEU 83 83 83 LEU LEU P . n B 2 84 LEU 84 84 84 LEU LEU P . n B 2 85 ASN 85 85 85 ASN ASN P . n B 2 86 SER 86 86 86 SER SER P . n B 2 87 PHE 87 87 87 PHE PHE P . n B 2 88 ASP 88 88 88 ASP ASP P . n B 2 89 THR 89 89 89 THR THR P . n B 2 90 ARG 90 90 90 ARG ARG P . n B 2 91 ASN 91 91 91 ASN ASN P . n B 2 92 ARG 92 92 92 ARG ARG P . n B 2 93 ILE 93 93 93 ILE ILE P . n B 2 94 ILE 94 94 94 ILE ILE P . n B 2 95 GLU 95 95 95 GLU GLU P . n B 2 96 VAL 96 96 96 VAL VAL P . n B 2 97 ASN 97 97 97 ASN ASN P . n B 2 98 ASN 98 98 98 ASN ASN P . n B 2 99 GLN 99 99 99 GLN GLN P . n B 2 100 PRO 100 100 100 PRO PRO P . n B 2 101 ALA 101 101 101 ALA ALA P . n B 2 102 PRO 102 102 102 PRO PRO P . n B 2 103 ASN 103 103 103 ASN ASN P . n B 2 104 THR 104 104 104 THR THR P . n B 2 105 THR 105 105 105 THR THR P . n B 2 106 GLU 106 106 106 GLU GLU P . n B 2 107 ILE 107 107 107 ILE ILE P . n B 2 108 VAL 108 108 108 VAL VAL P . n B 2 109 ASN 109 109 109 ASN ASN P . n B 2 110 ALA 110 110 110 ALA ALA P . n B 2 111 THR 111 111 111 THR THR P . n B 2 112 GLN 112 112 112 GLN GLN P . n B 2 113 ARG 113 113 113 ARG ARG P . n B 2 114 VAL 114 114 114 VAL VAL P . n B 2 115 ASP 115 115 115 ASP ASP P . n B 2 116 ASP 116 116 116 ASP ASP P . n B 2 117 ALA 117 117 117 ALA ALA P . n B 2 118 THR 118 118 118 THR THR P . n B 2 119 VAL 119 119 119 VAL VAL P . n B 2 120 ALA 120 120 120 ALA ALA P . n B 2 121 ILE 121 121 121 ILE ILE P . n B 2 122 ARG 122 122 122 ARG ARG P . n B 2 123 ALA 123 123 123 ALA ALA P . n B 2 124 SER 124 124 124 SER SER P . n B 2 125 ILE 125 125 125 ILE ILE P . n B 2 126 ASN 126 126 126 ASN ASN P . n B 2 127 ASN 127 127 127 ASN ASN P . n B 2 128 LEU 128 128 128 LEU LEU P . n B 2 129 ALA 129 129 129 ALA ALA P . n B 2 130 ASN 130 130 130 ASN ASN P . n B 2 131 GLU 131 131 131 GLU GLU P . n B 2 132 LEU 132 132 132 LEU LEU P . n B 2 133 VAL 133 133 133 VAL VAL P . n B 2 134 ARG 134 134 134 ARG ARG P . n B 2 135 GLY 135 135 135 GLY GLY P . n B 2 136 THR 136 136 136 THR THR P . n B 2 137 GLY 137 137 137 GLY GLY P . n B 2 138 MET 138 138 138 MET MET P . n B 2 139 PHE 139 139 139 PHE PHE P . n B 2 140 ASN 140 140 140 ASN ASN P . n B 2 141 GLN 141 141 141 GLN GLN P . n B 2 142 ALA 142 142 142 ALA ALA P . n B 2 143 GLY 143 143 143 GLY GLY P . n B 2 144 PHE 144 144 144 PHE PHE P . n B 2 145 GLU 145 145 145 GLU GLU P . n B 2 146 THR 146 146 146 THR THR P . n B 2 147 ALA 147 147 147 ALA ALA P . n B 2 148 SER 148 148 148 SER SER P . n B 2 149 GLY 149 149 149 GLY GLY P . n B 2 150 LEU 150 150 150 LEU LEU P . n B 2 151 VAL 151 151 151 VAL VAL P . n B 2 152 TRP 152 152 152 TRP TRP P . n B 2 153 THR 153 153 153 THR THR P . n B 2 154 THR 154 154 154 THR THR P . n B 2 155 THR 155 155 155 THR THR P . n B 2 156 PRO 156 156 156 PRO PRO P . n B 2 157 ALA 157 157 157 ALA ALA P . n B 2 158 THR 158 158 158 THR THR P . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 8 8 HOH HOH R . D 3 HOH 1 159 1 HOH HOH P . D 3 HOH 2 160 2 HOH HOH P . D 3 HOH 3 161 3 HOH HOH P . D 3 HOH 4 162 4 HOH HOH P . D 3 HOH 5 163 5 HOH HOH P . D 3 HOH 6 164 6 HOH HOH P . D 3 HOH 7 165 7 HOH HOH P . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 PROLSQ refinement . ? 2 X-PLOR refinement . ? 3 X-PLOR phasing . ? 4 # _cell.entry_id 1VTM _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VTM _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1VTM _exptl.method 'FIBER DIFFRACTION' _exptl.crystals_number ? # _refine.entry_id 1VTM _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.0 _refine.ls_d_res_high 3.5 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.096 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;THIS STRUCTURE WAS DETERMINED FROM FIBER DIFFRACTION DATA BY MOLECULAR REPLACEMENT FROM TMV, PROTEIN DATA BANK ENTRY 2TMV. U2 HAS 72 PER CENT SEQUENCE HOMOLOGY WITH TMV. THIS STRUCTURE INCLUDES ALL 158 AMINO ACIDS AND 3 RNA NUCLEOTIDES, MODELED AS GAA BUT REPRESENTING THE ENTIRE GENOME. THERE IS ONE SMALL SHEET IN THIS STRUCTURE BUT IT IS TOO IRREGULAR TO INCLUDE. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'FIBER DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'FIBER DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1232 _refine_hist.pdbx_number_atoms_nucleic_acid 67 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 1307 _refine_hist.d_res_high 3.5 _refine_hist.d_res_low 10.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.019 ? ? ? 'FIBER DIFFRACTION' ? p_angle_d 4.1 ? ? ? 'FIBER DIFFRACTION' ? p_angle_deg ? ? ? ? 'FIBER DIFFRACTION' ? p_planar_d ? ? ? ? 'FIBER DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'FIBER DIFFRACTION' ? p_mcbond_it ? ? ? ? 'FIBER DIFFRACTION' ? p_mcangle_it ? ? ? ? 'FIBER DIFFRACTION' ? p_scbond_it ? ? ? ? 'FIBER DIFFRACTION' ? p_scangle_it ? ? ? ? 'FIBER DIFFRACTION' ? p_plane_restr ? ? ? ? 'FIBER DIFFRACTION' ? p_chiral_restr ? ? ? ? 'FIBER DIFFRACTION' ? p_singtor_nbd ? ? ? ? 'FIBER DIFFRACTION' ? p_multtor_nbd ? ? ? ? 'FIBER DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'FIBER DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'FIBER DIFFRACTION' ? p_planar_tor ? ? ? ? 'FIBER DIFFRACTION' ? p_staggered_tor ? ? ? ? 'FIBER DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'FIBER DIFFRACTION' ? p_transverse_tor ? ? ? ? 'FIBER DIFFRACTION' ? p_special_tor ? ? ? ? 'FIBER DIFFRACTION' ? # _database_PDB_matrix.entry_id 1VTM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VTM _struct.title 'STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VTM _struct_keywords.pdbx_keywords Virus/RNA _struct_keywords.text 'VIRUS, Helical virus, Virus-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP COAT_TMGMV 2 P03579 1 ;PYTINSPSQFVYLSSAYADPVQLINLCTNALGNQFQTQQARTTVQQQFADAWKPVPSMTVRFPASDFYVYRYNSTLDPLI TALLNSFDTRNRIIEVDNQPAPNTTEIVNATQRVDDATVAIRASINNLANELVRGTGMFNQAGFETASGLVWTTTPAT ; ? 2 PDB 1VTM 1 1VTM ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VTM P 1 ? 158 ? P03579 1 ? 158 ? 1 158 2 2 1VTM R 1 ? 3 ? 1VTM 1 ? 3 ? 1 3 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VTM GLU P 22 ? UNP P03579 GLN 22 conflict 22 1 1 1VTM SER P 55 ? UNP P03579 VAL 55 conflict 55 2 1 1VTM VAL P 57 ? UNP P03579 SER 57 conflict 57 3 1 1VTM ASN P 97 ? UNP P03579 ASP 97 conflict 97 4 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? helical 98 2 'helical asymmetric unit' ? dimeric 2 3 'helical asymmetric unit, std helical frame' ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-49)' A,B,C,D 2 1 A,B,C,D 3 H A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'helical symmetry operation' ? ? -0.98155916 0.19115863 0.00000000 0.00000 -0.19115863 -0.98155916 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -33.79592 2 'helical symmetry operation' ? ? -0.83808810 0.54553490 0.00000000 0.00000 -0.54553490 -0.83808810 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -32.38776 3 'helical symmetry operation' ? ? -0.57211666 0.82017225 0.00000000 0.00000 -0.82017225 -0.57211666 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -30.97959 4 'helical symmetry operation' ? ? -0.22252093 0.97492791 0.00000000 0.00000 -0.97492791 -0.22252093 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -29.57143 5 'helical symmetry operation' ? ? 0.15959990 0.98718178 0.00000000 0.00000 -0.98718178 0.15959990 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -28.16327 6 'helical symmetry operation' ? ? 0.51839257 0.85514276 0.00000000 0.00000 -0.85514276 0.51839257 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -26.75510 7 'helical symmetry operation' ? ? 0.80141362 0.59811053 0.00000000 0.00000 -0.59811053 0.80141362 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -25.34694 8 'helical symmetry operation' ? ? 0.96729486 0.25365458 0.00000000 0.00000 -0.25365458 0.96729486 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -23.93878 9 'helical symmetry operation' ? ? 0.99179001 -0.12787716 0.00000000 0.00000 0.12787716 0.99179001 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -22.53061 10 'helical symmetry operation' ? ? 0.87131870 -0.49071755 0.00000000 0.00000 0.49071755 0.87131870 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -21.12245 11 'helical symmetry operation' ? ? 0.62348980 -0.78183148 0.00000000 0.00000 0.78183148 0.62348980 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -19.71429 12 'helical symmetry operation' ? ? 0.28452759 -0.95866785 0.00000000 0.00000 0.95866785 0.28452759 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -18.30612 13 'helical symmetry operation' ? ? -0.09602303 -0.99537911 0.00000000 0.00000 0.99537911 -0.09602303 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -16.89796 14 'helical symmetry operation' ? ? -0.46253829 -0.88659931 0.00000000 0.00000 0.88659931 -0.46253829 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -15.48980 15 'helical symmetry operation' ? ? -0.76144596 -0.64822840 0.00000000 0.00000 0.64822840 -0.76144596 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -14.08163 16 'helical symmetry operation' ? ? -0.94905575 -0.31510822 0.00000000 0.00000 0.31510822 -0.94905575 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -12.67347 17 'helical symmetry operation' ? ? -0.99794539 0.06407022 0.00000000 0.00000 -0.06407022 -0.99794539 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -11.26531 18 'helical symmetry operation' ? ? -0.90096887 0.43388374 0.00000000 0.00000 -0.43388374 -0.90096887 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -9.85714 19 'helical symmetry operation' ? ? -0.67230089 0.74027800 0.00000000 0.00000 -0.74027800 -0.67230089 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -8.44898 20 'helical symmetry operation' ? ? -0.34536505 0.93846842 0.00000000 0.00000 -0.93846842 -0.34536505 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -7.04082 21 'helical symmetry operation' ? ? 0.03205158 0.99948622 0.00000000 0.00000 -0.99948622 0.03205158 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -5.63265 22 'helical symmetry operation' ? ? 0.40478334 0.91441262 0.00000000 0.00000 -0.91441262 0.40478334 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -4.22449 23 'helical symmetry operation' ? ? 0.71834935 0.69568255 0.00000000 0.00000 -0.69568255 0.71834935 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -2.81633 24 'helical symmetry operation' ? ? 0.92691676 0.37526700 0.00000000 0.00000 -0.37526700 0.92691676 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -1.40816 25 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -0.00000 26 'helical symmetry operation' ? ? 0.92691676 -0.37526700 0.00000000 0.00000 0.37526700 0.92691676 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 1.40816 27 'helical symmetry operation' ? ? 0.71834935 -0.69568255 0.00000000 0.00000 0.69568255 0.71834935 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 2.81633 28 'helical symmetry operation' ? ? 0.40478334 -0.91441262 0.00000000 0.00000 0.91441262 0.40478334 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 4.22449 29 'helical symmetry operation' ? ? 0.03205158 -0.99948622 0.00000000 0.00000 0.99948622 0.03205158 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 5.63265 30 'helical symmetry operation' ? ? -0.34536505 -0.93846842 0.00000000 0.00000 0.93846842 -0.34536505 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 7.04082 31 'helical symmetry operation' ? ? -0.67230089 -0.74027800 0.00000000 0.00000 0.74027800 -0.67230089 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 8.44898 32 'helical symmetry operation' ? ? -0.90096887 -0.43388374 0.00000000 0.00000 0.43388374 -0.90096887 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 9.85714 33 'helical symmetry operation' ? ? -0.99794539 -0.06407022 0.00000000 0.00000 0.06407022 -0.99794539 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 11.26531 34 'helical symmetry operation' ? ? -0.94905575 0.31510822 0.00000000 0.00000 -0.31510822 -0.94905575 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 12.67347 35 'helical symmetry operation' ? ? -0.76144596 0.64822840 0.00000000 0.00000 -0.64822840 -0.76144596 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 14.08163 36 'helical symmetry operation' ? ? -0.46253829 0.88659931 0.00000000 0.00000 -0.88659931 -0.46253829 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 15.48980 37 'helical symmetry operation' ? ? -0.09602303 0.99537911 0.00000000 0.00000 -0.99537911 -0.09602303 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 16.89796 38 'helical symmetry operation' ? ? 0.28452759 0.95866785 0.00000000 0.00000 -0.95866785 0.28452759 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 18.30612 39 'helical symmetry operation' ? ? 0.62348980 0.78183148 0.00000000 0.00000 -0.78183148 0.62348980 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 19.71429 40 'helical symmetry operation' ? ? 0.87131870 0.49071755 0.00000000 0.00000 -0.49071755 0.87131870 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 21.12245 41 'helical symmetry operation' ? ? 0.99179001 0.12787716 0.00000000 0.00000 -0.12787716 0.99179001 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 22.53061 42 'helical symmetry operation' ? ? 0.96729486 -0.25365458 0.00000000 0.00000 0.25365458 0.96729486 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 23.93878 43 'helical symmetry operation' ? ? 0.80141362 -0.59811053 0.00000000 0.00000 0.59811053 0.80141362 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 25.34694 44 'helical symmetry operation' ? ? 0.51839257 -0.85514276 0.00000000 0.00000 0.85514276 0.51839257 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 26.75510 45 'helical symmetry operation' ? ? 0.15959990 -0.98718178 0.00000000 0.00000 0.98718178 0.15959990 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 28.16327 46 'helical symmetry operation' ? ? -0.22252093 -0.97492791 0.00000000 0.00000 0.97492791 -0.22252093 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 29.57143 47 'helical symmetry operation' ? ? -0.57211666 -0.82017225 0.00000000 0.00000 0.82017225 -0.57211666 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 30.97959 48 'helical symmetry operation' ? ? -0.83808810 -0.54553490 0.00000000 0.00000 0.54553490 -0.83808810 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 32.38776 49 'helical symmetry operation' ? ? -0.98155916 -0.19115863 0.00000000 0.00000 0.19115863 -0.98155916 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 33.79592 # _struct_biol.id 1 _struct_biol.details ;THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW REPRESENTS HELICAL SYMMETRY WITH THE HELIX AXIS ON THE Z AXIS. THERE ARE 49 SUBUNITS IN 3 TURNS OF THE HELIX. THE FULL (49 SUBUNIT) HELICAL REPEAT IS 69 ANGSTROMS. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 N GLN B 9 ? SER B 14 ? GLN P 9 SER P 14 1 'ENDS POORLY DEFINED' 6 HELX_P HELX_P2 LS VAL B 21 ? LEU B 31 ? VAL P 21 LEU P 31 1 'ENDS POORLY DEFINED' 11 HELX_P HELX_P3 RS THR B 37 ? TRP B 52 ? THR P 37 TRP P 52 1 'ENDS POORLY DEFINED' 16 HELX_P HELX_P4 RR ASN B 73 ? PHE B 87 ? ASN P 73 PHE P 87 1 'ENDS POORLY DEFINED' 15 HELX_P HELX_P5 LR THR B 111 ? LEU B 132 ? THR P 111 LEU P 132 1 'ENDS POORLY DEFINED' 22 HELX_P HELX_P6 C ASN B 140 ? SER B 148 ? ASN P 140 SER P 148 1 'ENDS POORLY DEFINED' 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR B 17 ? ALA B 18 ? TYR P 17 ALA P 18 A 2 TYR B 68 ? TYR B 70 ? TYR P 68 TYR P 70 A 3 MET B 138 ? PHE B 139 ? MET P 138 PHE P 139 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA B 18 ? O ALA P 18 N VAL B 69 ? N VAL P 69 A 2 3 O TYR B 68 ? O TYR P 68 N PHE B 139 ? N PHE P 139 # _struct_site.id RNA _struct_site.pdbx_evidence_code Author _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'RNA BINDING SITE' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 RNA 6 ALA B 40 ? ALA P 40 . ? 1_555 ? 2 RNA 6 ARG B 90 ? ARG P 90 . ? 1_555 ? 3 RNA 6 ARG B 92 ? ARG P 92 . ? 1_555 ? 4 RNA 6 ARG B 113 ? ARG P 113 . ? 1_555 ? 5 RNA 6 ASP B 116 ? ASP P 116 . ? 1_555 ? 6 RNA 6 ARG B 122 ? ARG P 122 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P R G 1 ? ? "O5'" R G 1 ? ? 1.668 1.593 0.075 0.010 N 2 1 N9 R A 3 ? ? C4 R A 3 ? ? 1.431 1.374 0.057 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" R G 1 ? ? "C4'" R G 1 ? ? "O4'" R G 1 ? ? 115.76 109.80 5.96 0.90 N 2 1 N7 R G 1 ? ? C8 R G 1 ? ? N9 R G 1 ? ? 116.19 113.10 3.09 0.50 N 3 1 C8 R G 1 ? ? N9 R G 1 ? ? C4 R G 1 ? ? 103.42 106.40 -2.98 0.40 N 4 1 "C3'" R G 1 ? ? "O3'" R G 1 ? ? P R A 2 ? ? 132.88 119.70 13.18 1.20 Y 5 1 P R A 2 ? ? "O5'" R A 2 ? ? "C5'" R A 2 ? ? 108.86 120.90 -12.04 1.60 N 6 1 "C5'" R A 2 ? ? "C4'" R A 2 ? ? "C3'" R A 2 ? ? 100.28 115.20 -14.92 1.40 N 7 1 "C4'" R A 2 ? ? "C3'" R A 2 ? ? "C2'" R A 2 ? ? 112.87 102.60 10.27 1.00 N 8 1 "O4'" R A 2 ? ? "C1'" R A 2 ? ? N9 R A 2 ? ? 119.77 108.50 11.27 0.70 N 9 1 "C3'" R A 3 ? ? "C2'" R A 3 ? ? "C1'" R A 3 ? ? 96.60 101.30 -4.70 0.70 N 10 1 N9 R A 3 ? ? "C1'" R A 3 ? ? "C2'" R A 3 ? ? 124.16 114.00 10.16 1.30 N 11 1 "O4'" R A 3 ? ? "C1'" R A 3 ? ? N9 R A 3 ? ? 115.17 108.50 6.67 0.70 N 12 1 C5 R A 3 ? ? C6 R A 3 ? ? N1 R A 3 ? ? 120.76 117.70 3.06 0.50 N 13 1 C8 R A 3 ? ? N9 R A 3 ? ? C4 R A 3 ? ? 103.35 105.80 -2.45 0.40 N 14 1 C5 R A 3 ? ? C6 R A 3 ? ? N6 R A 3 ? ? 118.40 123.70 -5.30 0.80 N 15 1 CB P TYR 12 ? ? CG P TYR 12 ? ? CD2 P TYR 12 ? ? 117.00 121.00 -4.00 0.60 N 16 1 CA P TYR 17 ? ? C P TYR 17 ? ? N P ALA 18 ? ? 98.98 117.20 -18.22 2.20 Y 17 1 CA P CYS 27 ? ? CB P CYS 27 ? ? SG P CYS 27 ? ? 125.79 114.20 11.59 1.10 N 18 1 CA P VAL 44 ? ? CB P VAL 44 ? ? CG2 P VAL 44 ? ? 99.47 110.90 -11.43 1.50 N 19 1 CD1 P TRP 52 ? ? CG P TRP 52 ? ? CD2 P TRP 52 ? ? 113.32 106.30 7.02 0.80 N 20 1 CB P TRP 52 ? ? CG P TRP 52 ? ? CD1 P TRP 52 ? ? 116.67 127.00 -10.33 1.30 N 21 1 CE2 P TRP 52 ? ? CD2 P TRP 52 ? ? CG P TRP 52 ? ? 100.43 107.30 -6.87 0.80 N 22 1 CG P TRP 52 ? ? CD2 P TRP 52 ? ? CE3 P TRP 52 ? ? 141.14 133.90 7.24 0.90 N 23 1 NE P ARG 61 ? ? CZ P ARG 61 ? ? NH1 P ARG 61 ? ? 123.59 120.30 3.29 0.50 N 24 1 CA P TYR 68 ? ? C P TYR 68 ? ? N P VAL 69 ? ? 103.45 117.20 -13.75 2.20 Y 25 1 CA P TYR 72 ? ? C P TYR 72 ? ? N P ASN 73 ? ? 102.76 117.20 -14.44 2.20 Y 26 1 CA P LEU 79 ? ? CB P LEU 79 ? ? CG P LEU 79 ? ? 129.32 115.30 14.02 2.30 N 27 1 N P VAL 96 ? ? CA P VAL 96 ? ? C P VAL 96 ? ? 129.05 111.00 18.05 2.70 N 28 1 CA P GLU 106 ? ? C P GLU 106 ? ? N P ILE 107 ? ? 94.42 117.20 -22.78 2.20 Y 29 1 O P GLU 106 ? ? C P GLU 106 ? ? N P ILE 107 ? ? 134.06 122.70 11.36 1.60 Y 30 1 CD1 P TRP 152 ? ? CG P TRP 152 ? ? CD2 P TRP 152 ? ? 112.88 106.30 6.58 0.80 N 31 1 CE2 P TRP 152 ? ? CD2 P TRP 152 ? ? CG P TRP 152 ? ? 101.28 107.30 -6.02 0.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE P 4 ? ? -57.98 94.38 2 1 ASN P 5 ? ? -107.84 -71.58 3 1 GLN P 9 ? ? -28.31 -64.24 4 1 PHE P 10 ? ? -64.90 0.68 5 1 PRO P 20 ? ? -56.41 -85.45 6 1 LEU P 26 ? ? -69.36 -75.85 7 1 ASN P 33 ? ? -157.23 -84.05 8 1 GLN P 34 ? ? 178.82 81.65 9 1 PHE P 35 ? ? -66.08 21.50 10 1 THR P 42 ? ? -49.00 -75.21 11 1 GLN P 47 ? ? -67.35 -72.92 12 1 LYS P 53 ? ? -100.63 -168.78 13 1 SER P 55 ? ? -172.58 -73.25 14 1 ARG P 71 ? ? -35.10 -73.50 15 1 ARG P 90 ? ? -155.70 -80.23 16 1 ASN P 91 ? ? -146.97 -72.35 17 1 VAL P 96 ? ? -12.48 -173.62 18 1 ASN P 97 ? ? -76.63 36.04 19 1 ASN P 98 ? ? -77.02 -157.02 20 1 ALA P 101 ? ? 31.70 68.53 21 1 ASN P 103 ? ? -56.81 100.66 22 1 THR P 104 ? ? -36.80 -72.09 23 1 VAL P 108 ? ? -53.86 -72.67 24 1 THR P 136 ? ? -53.43 71.39 25 1 LEU P 150 ? ? -53.76 170.38 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLN _pdbx_validate_peptide_omega.auth_asym_id_1 P _pdbx_validate_peptide_omega.auth_seq_id_1 99 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 P _pdbx_validate_peptide_omega.auth_seq_id_2 100 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -108.08 # _pdbx_helical_symmetry.entry_id 1VTM _pdbx_helical_symmetry.number_of_operations 49 _pdbx_helical_symmetry.rotation_per_n_subunits 1080.000000 _pdbx_helical_symmetry.rise_per_n_subunits 69.000000 _pdbx_helical_symmetry.n_subunits_divisor 49 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _pdbx_entry_details.entry_id 1VTM _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;CONCERNING THE APPARENT SEQUENCE DISCREPANCY: THE AUTHORS USED THE SEQUENCE REPORTED BY ALTSCHUH ET AL., J. MOL. BIOL. (1987) 193, 693-707 RATHER THAN THAT FOUND IN SWISS-PROT ENTRY COAT_TMGMV. THE AUTHORS' VIRUS STOCKS WERE CLOSELY RELATED TO THE ALTSCHUH STOCKS. THE AUTHORS STATE THAT THE DIFFERENCES ARE NOT PARTICULARLY IMPORTANT STRUCTURALLY AND WERE TOO SMALL FOR THEIR MAP TO RESOLVE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CYS N N N N 111 CYS CA C N R 112 CYS C C N N 113 CYS O O N N 114 CYS CB C N N 115 CYS SG S N N 116 CYS OXT O N N 117 CYS H H N N 118 CYS H2 H N N 119 CYS HA H N N 120 CYS HB2 H N N 121 CYS HB3 H N N 122 CYS HG H N N 123 CYS HXT H N N 124 G OP3 O N N 125 G P P N N 126 G OP1 O N N 127 G OP2 O N N 128 G "O5'" O N N 129 G "C5'" C N N 130 G "C4'" C N R 131 G "O4'" O N N 132 G "C3'" C N S 133 G "O3'" O N N 134 G "C2'" C N R 135 G "O2'" O N N 136 G "C1'" C N R 137 G N9 N Y N 138 G C8 C Y N 139 G N7 N Y N 140 G C5 C Y N 141 G C6 C N N 142 G O6 O N N 143 G N1 N N N 144 G C2 C N N 145 G N2 N N N 146 G N3 N N N 147 G C4 C Y N 148 G HOP3 H N N 149 G HOP2 H N N 150 G "H5'" H N N 151 G "H5''" H N N 152 G "H4'" H N N 153 G "H3'" H N N 154 G "HO3'" H N N 155 G "H2'" H N N 156 G "HO2'" H N N 157 G "H1'" H N N 158 G H8 H N N 159 G H1 H N N 160 G H21 H N N 161 G H22 H N N 162 GLN N N N N 163 GLN CA C N S 164 GLN C C N N 165 GLN O O N N 166 GLN CB C N N 167 GLN CG C N N 168 GLN CD C N N 169 GLN OE1 O N N 170 GLN NE2 N N N 171 GLN OXT O N N 172 GLN H H N N 173 GLN H2 H N N 174 GLN HA H N N 175 GLN HB2 H N N 176 GLN HB3 H N N 177 GLN HG2 H N N 178 GLN HG3 H N N 179 GLN HE21 H N N 180 GLN HE22 H N N 181 GLN HXT H N N 182 GLU N N N N 183 GLU CA C N S 184 GLU C C N N 185 GLU O O N N 186 GLU CB C N N 187 GLU CG C N N 188 GLU CD C N N 189 GLU OE1 O N N 190 GLU OE2 O N N 191 GLU OXT O N N 192 GLU H H N N 193 GLU H2 H N N 194 GLU HA H N N 195 GLU HB2 H N N 196 GLU HB3 H N N 197 GLU HG2 H N N 198 GLU HG3 H N N 199 GLU HE2 H N N 200 GLU HXT H N N 201 GLY N N N N 202 GLY CA C N N 203 GLY C C N N 204 GLY O O N N 205 GLY OXT O N N 206 GLY H H N N 207 GLY H2 H N N 208 GLY HA2 H N N 209 GLY HA3 H N N 210 GLY HXT H N N 211 HOH O O N N 212 HOH H1 H N N 213 HOH H2 H N N 214 ILE N N N N 215 ILE CA C N S 216 ILE C C N N 217 ILE O O N N 218 ILE CB C N S 219 ILE CG1 C N N 220 ILE CG2 C N N 221 ILE CD1 C N N 222 ILE OXT O N N 223 ILE H H N N 224 ILE H2 H N N 225 ILE HA H N N 226 ILE HB H N N 227 ILE HG12 H N N 228 ILE HG13 H N N 229 ILE HG21 H N N 230 ILE HG22 H N N 231 ILE HG23 H N N 232 ILE HD11 H N N 233 ILE HD12 H N N 234 ILE HD13 H N N 235 ILE HXT H N N 236 LEU N N N N 237 LEU CA C N S 238 LEU C C N N 239 LEU O O N N 240 LEU CB C N N 241 LEU CG C N N 242 LEU CD1 C N N 243 LEU CD2 C N N 244 LEU OXT O N N 245 LEU H H N N 246 LEU H2 H N N 247 LEU HA H N N 248 LEU HB2 H N N 249 LEU HB3 H N N 250 LEU HG H N N 251 LEU HD11 H N N 252 LEU HD12 H N N 253 LEU HD13 H N N 254 LEU HD21 H N N 255 LEU HD22 H N N 256 LEU HD23 H N N 257 LEU HXT H N N 258 LYS N N N N 259 LYS CA C N S 260 LYS C C N N 261 LYS O O N N 262 LYS CB C N N 263 LYS CG C N N 264 LYS CD C N N 265 LYS CE C N N 266 LYS NZ N N N 267 LYS OXT O N N 268 LYS H H N N 269 LYS H2 H N N 270 LYS HA H N N 271 LYS HB2 H N N 272 LYS HB3 H N N 273 LYS HG2 H N N 274 LYS HG3 H N N 275 LYS HD2 H N N 276 LYS HD3 H N N 277 LYS HE2 H N N 278 LYS HE3 H N N 279 LYS HZ1 H N N 280 LYS HZ2 H N N 281 LYS HZ3 H N N 282 LYS HXT H N N 283 MET N N N N 284 MET CA C N S 285 MET C C N N 286 MET O O N N 287 MET CB C N N 288 MET CG C N N 289 MET SD S N N 290 MET CE C N N 291 MET OXT O N N 292 MET H H N N 293 MET H2 H N N 294 MET HA H N N 295 MET HB2 H N N 296 MET HB3 H N N 297 MET HG2 H N N 298 MET HG3 H N N 299 MET HE1 H N N 300 MET HE2 H N N 301 MET HE3 H N N 302 MET HXT H N N 303 PHE N N N N 304 PHE CA C N S 305 PHE C C N N 306 PHE O O N N 307 PHE CB C N N 308 PHE CG C Y N 309 PHE CD1 C Y N 310 PHE CD2 C Y N 311 PHE CE1 C Y N 312 PHE CE2 C Y N 313 PHE CZ C Y N 314 PHE OXT O N N 315 PHE H H N N 316 PHE H2 H N N 317 PHE HA H N N 318 PHE HB2 H N N 319 PHE HB3 H N N 320 PHE HD1 H N N 321 PHE HD2 H N N 322 PHE HE1 H N N 323 PHE HE2 H N N 324 PHE HZ H N N 325 PHE HXT H N N 326 PRO N N N N 327 PRO CA C N S 328 PRO C C N N 329 PRO O O N N 330 PRO CB C N N 331 PRO CG C N N 332 PRO CD C N N 333 PRO OXT O N N 334 PRO H H N N 335 PRO HA H N N 336 PRO HB2 H N N 337 PRO HB3 H N N 338 PRO HG2 H N N 339 PRO HG3 H N N 340 PRO HD2 H N N 341 PRO HD3 H N N 342 PRO HXT H N N 343 SER N N N N 344 SER CA C N S 345 SER C C N N 346 SER O O N N 347 SER CB C N N 348 SER OG O N N 349 SER OXT O N N 350 SER H H N N 351 SER H2 H N N 352 SER HA H N N 353 SER HB2 H N N 354 SER HB3 H N N 355 SER HG H N N 356 SER HXT H N N 357 THR N N N N 358 THR CA C N S 359 THR C C N N 360 THR O O N N 361 THR CB C N R 362 THR OG1 O N N 363 THR CG2 C N N 364 THR OXT O N N 365 THR H H N N 366 THR H2 H N N 367 THR HA H N N 368 THR HB H N N 369 THR HG1 H N N 370 THR HG21 H N N 371 THR HG22 H N N 372 THR HG23 H N N 373 THR HXT H N N 374 TRP N N N N 375 TRP CA C N S 376 TRP C C N N 377 TRP O O N N 378 TRP CB C N N 379 TRP CG C Y N 380 TRP CD1 C Y N 381 TRP CD2 C Y N 382 TRP NE1 N Y N 383 TRP CE2 C Y N 384 TRP CE3 C Y N 385 TRP CZ2 C Y N 386 TRP CZ3 C Y N 387 TRP CH2 C Y N 388 TRP OXT O N N 389 TRP H H N N 390 TRP H2 H N N 391 TRP HA H N N 392 TRP HB2 H N N 393 TRP HB3 H N N 394 TRP HD1 H N N 395 TRP HE1 H N N 396 TRP HE3 H N N 397 TRP HZ2 H N N 398 TRP HZ3 H N N 399 TRP HH2 H N N 400 TRP HXT H N N 401 TYR N N N N 402 TYR CA C N S 403 TYR C C N N 404 TYR O O N N 405 TYR CB C N N 406 TYR CG C Y N 407 TYR CD1 C Y N 408 TYR CD2 C Y N 409 TYR CE1 C Y N 410 TYR CE2 C Y N 411 TYR CZ C Y N 412 TYR OH O N N 413 TYR OXT O N N 414 TYR H H N N 415 TYR H2 H N N 416 TYR HA H N N 417 TYR HB2 H N N 418 TYR HB3 H N N 419 TYR HD1 H N N 420 TYR HD2 H N N 421 TYR HE1 H N N 422 TYR HE2 H N N 423 TYR HH H N N 424 TYR HXT H N N 425 VAL N N N N 426 VAL CA C N S 427 VAL C C N N 428 VAL O O N N 429 VAL CB C N N 430 VAL CG1 C N N 431 VAL CG2 C N N 432 VAL OXT O N N 433 VAL H H N N 434 VAL H2 H N N 435 VAL HA H N N 436 VAL HB H N N 437 VAL HG11 H N N 438 VAL HG12 H N N 439 VAL HG13 H N N 440 VAL HG21 H N N 441 VAL HG22 H N N 442 VAL HG23 H N N 443 VAL HXT H N N 444 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 CYS N CA sing N N 109 CYS N H sing N N 110 CYS N H2 sing N N 111 CYS CA C sing N N 112 CYS CA CB sing N N 113 CYS CA HA sing N N 114 CYS C O doub N N 115 CYS C OXT sing N N 116 CYS CB SG sing N N 117 CYS CB HB2 sing N N 118 CYS CB HB3 sing N N 119 CYS SG HG sing N N 120 CYS OXT HXT sing N N 121 G OP3 P sing N N 122 G OP3 HOP3 sing N N 123 G P OP1 doub N N 124 G P OP2 sing N N 125 G P "O5'" sing N N 126 G OP2 HOP2 sing N N 127 G "O5'" "C5'" sing N N 128 G "C5'" "C4'" sing N N 129 G "C5'" "H5'" sing N N 130 G "C5'" "H5''" sing N N 131 G "C4'" "O4'" sing N N 132 G "C4'" "C3'" sing N N 133 G "C4'" "H4'" sing N N 134 G "O4'" "C1'" sing N N 135 G "C3'" "O3'" sing N N 136 G "C3'" "C2'" sing N N 137 G "C3'" "H3'" sing N N 138 G "O3'" "HO3'" sing N N 139 G "C2'" "O2'" sing N N 140 G "C2'" "C1'" sing N N 141 G "C2'" "H2'" sing N N 142 G "O2'" "HO2'" sing N N 143 G "C1'" N9 sing N N 144 G "C1'" "H1'" sing N N 145 G N9 C8 sing Y N 146 G N9 C4 sing Y N 147 G C8 N7 doub Y N 148 G C8 H8 sing N N 149 G N7 C5 sing Y N 150 G C5 C6 sing N N 151 G C5 C4 doub Y N 152 G C6 O6 doub N N 153 G C6 N1 sing N N 154 G N1 C2 sing N N 155 G N1 H1 sing N N 156 G C2 N2 sing N N 157 G C2 N3 doub N N 158 G N2 H21 sing N N 159 G N2 H22 sing N N 160 G N3 C4 sing N N 161 GLN N CA sing N N 162 GLN N H sing N N 163 GLN N H2 sing N N 164 GLN CA C sing N N 165 GLN CA CB sing N N 166 GLN CA HA sing N N 167 GLN C O doub N N 168 GLN C OXT sing N N 169 GLN CB CG sing N N 170 GLN CB HB2 sing N N 171 GLN CB HB3 sing N N 172 GLN CG CD sing N N 173 GLN CG HG2 sing N N 174 GLN CG HG3 sing N N 175 GLN CD OE1 doub N N 176 GLN CD NE2 sing N N 177 GLN NE2 HE21 sing N N 178 GLN NE2 HE22 sing N N 179 GLN OXT HXT sing N N 180 GLU N CA sing N N 181 GLU N H sing N N 182 GLU N H2 sing N N 183 GLU CA C sing N N 184 GLU CA CB sing N N 185 GLU CA HA sing N N 186 GLU C O doub N N 187 GLU C OXT sing N N 188 GLU CB CG sing N N 189 GLU CB HB2 sing N N 190 GLU CB HB3 sing N N 191 GLU CG CD sing N N 192 GLU CG HG2 sing N N 193 GLU CG HG3 sing N N 194 GLU CD OE1 doub N N 195 GLU CD OE2 sing N N 196 GLU OE2 HE2 sing N N 197 GLU OXT HXT sing N N 198 GLY N CA sing N N 199 GLY N H sing N N 200 GLY N H2 sing N N 201 GLY CA C sing N N 202 GLY CA HA2 sing N N 203 GLY CA HA3 sing N N 204 GLY C O doub N N 205 GLY C OXT sing N N 206 GLY OXT HXT sing N N 207 HOH O H1 sing N N 208 HOH O H2 sing N N 209 ILE N CA sing N N 210 ILE N H sing N N 211 ILE N H2 sing N N 212 ILE CA C sing N N 213 ILE CA CB sing N N 214 ILE CA HA sing N N 215 ILE C O doub N N 216 ILE C OXT sing N N 217 ILE CB CG1 sing N N 218 ILE CB CG2 sing N N 219 ILE CB HB sing N N 220 ILE CG1 CD1 sing N N 221 ILE CG1 HG12 sing N N 222 ILE CG1 HG13 sing N N 223 ILE CG2 HG21 sing N N 224 ILE CG2 HG22 sing N N 225 ILE CG2 HG23 sing N N 226 ILE CD1 HD11 sing N N 227 ILE CD1 HD12 sing N N 228 ILE CD1 HD13 sing N N 229 ILE OXT HXT sing N N 230 LEU N CA sing N N 231 LEU N H sing N N 232 LEU N H2 sing N N 233 LEU CA C sing N N 234 LEU CA CB sing N N 235 LEU CA HA sing N N 236 LEU C O doub N N 237 LEU C OXT sing N N 238 LEU CB CG sing N N 239 LEU CB HB2 sing N N 240 LEU CB HB3 sing N N 241 LEU CG CD1 sing N N 242 LEU CG CD2 sing N N 243 LEU CG HG sing N N 244 LEU CD1 HD11 sing N N 245 LEU CD1 HD12 sing N N 246 LEU CD1 HD13 sing N N 247 LEU CD2 HD21 sing N N 248 LEU CD2 HD22 sing N N 249 LEU CD2 HD23 sing N N 250 LEU OXT HXT sing N N 251 LYS N CA sing N N 252 LYS N H sing N N 253 LYS N H2 sing N N 254 LYS CA C sing N N 255 LYS CA CB sing N N 256 LYS CA HA sing N N 257 LYS C O doub N N 258 LYS C OXT sing N N 259 LYS CB CG sing N N 260 LYS CB HB2 sing N N 261 LYS CB HB3 sing N N 262 LYS CG CD sing N N 263 LYS CG HG2 sing N N 264 LYS CG HG3 sing N N 265 LYS CD CE sing N N 266 LYS CD HD2 sing N N 267 LYS CD HD3 sing N N 268 LYS CE NZ sing N N 269 LYS CE HE2 sing N N 270 LYS CE HE3 sing N N 271 LYS NZ HZ1 sing N N 272 LYS NZ HZ2 sing N N 273 LYS NZ HZ3 sing N N 274 LYS OXT HXT sing N N 275 MET N CA sing N N 276 MET N H sing N N 277 MET N H2 sing N N 278 MET CA C sing N N 279 MET CA CB sing N N 280 MET CA HA sing N N 281 MET C O doub N N 282 MET C OXT sing N N 283 MET CB CG sing N N 284 MET CB HB2 sing N N 285 MET CB HB3 sing N N 286 MET CG SD sing N N 287 MET CG HG2 sing N N 288 MET CG HG3 sing N N 289 MET SD CE sing N N 290 MET CE HE1 sing N N 291 MET CE HE2 sing N N 292 MET CE HE3 sing N N 293 MET OXT HXT sing N N 294 PHE N CA sing N N 295 PHE N H sing N N 296 PHE N H2 sing N N 297 PHE CA C sing N N 298 PHE CA CB sing N N 299 PHE CA HA sing N N 300 PHE C O doub N N 301 PHE C OXT sing N N 302 PHE CB CG sing N N 303 PHE CB HB2 sing N N 304 PHE CB HB3 sing N N 305 PHE CG CD1 doub Y N 306 PHE CG CD2 sing Y N 307 PHE CD1 CE1 sing Y N 308 PHE CD1 HD1 sing N N 309 PHE CD2 CE2 doub Y N 310 PHE CD2 HD2 sing N N 311 PHE CE1 CZ doub Y N 312 PHE CE1 HE1 sing N N 313 PHE CE2 CZ sing Y N 314 PHE CE2 HE2 sing N N 315 PHE CZ HZ sing N N 316 PHE OXT HXT sing N N 317 PRO N CA sing N N 318 PRO N CD sing N N 319 PRO N H sing N N 320 PRO CA C sing N N 321 PRO CA CB sing N N 322 PRO CA HA sing N N 323 PRO C O doub N N 324 PRO C OXT sing N N 325 PRO CB CG sing N N 326 PRO CB HB2 sing N N 327 PRO CB HB3 sing N N 328 PRO CG CD sing N N 329 PRO CG HG2 sing N N 330 PRO CG HG3 sing N N 331 PRO CD HD2 sing N N 332 PRO CD HD3 sing N N 333 PRO OXT HXT sing N N 334 SER N CA sing N N 335 SER N H sing N N 336 SER N H2 sing N N 337 SER CA C sing N N 338 SER CA CB sing N N 339 SER CA HA sing N N 340 SER C O doub N N 341 SER C OXT sing N N 342 SER CB OG sing N N 343 SER CB HB2 sing N N 344 SER CB HB3 sing N N 345 SER OG HG sing N N 346 SER OXT HXT sing N N 347 THR N CA sing N N 348 THR N H sing N N 349 THR N H2 sing N N 350 THR CA C sing N N 351 THR CA CB sing N N 352 THR CA HA sing N N 353 THR C O doub N N 354 THR C OXT sing N N 355 THR CB OG1 sing N N 356 THR CB CG2 sing N N 357 THR CB HB sing N N 358 THR OG1 HG1 sing N N 359 THR CG2 HG21 sing N N 360 THR CG2 HG22 sing N N 361 THR CG2 HG23 sing N N 362 THR OXT HXT sing N N 363 TRP N CA sing N N 364 TRP N H sing N N 365 TRP N H2 sing N N 366 TRP CA C sing N N 367 TRP CA CB sing N N 368 TRP CA HA sing N N 369 TRP C O doub N N 370 TRP C OXT sing N N 371 TRP CB CG sing N N 372 TRP CB HB2 sing N N 373 TRP CB HB3 sing N N 374 TRP CG CD1 doub Y N 375 TRP CG CD2 sing Y N 376 TRP CD1 NE1 sing Y N 377 TRP CD1 HD1 sing N N 378 TRP CD2 CE2 doub Y N 379 TRP CD2 CE3 sing Y N 380 TRP NE1 CE2 sing Y N 381 TRP NE1 HE1 sing N N 382 TRP CE2 CZ2 sing Y N 383 TRP CE3 CZ3 doub Y N 384 TRP CE3 HE3 sing N N 385 TRP CZ2 CH2 doub Y N 386 TRP CZ2 HZ2 sing N N 387 TRP CZ3 CH2 sing Y N 388 TRP CZ3 HZ3 sing N N 389 TRP CH2 HH2 sing N N 390 TRP OXT HXT sing N N 391 TYR N CA sing N N 392 TYR N H sing N N 393 TYR N H2 sing N N 394 TYR CA C sing N N 395 TYR CA CB sing N N 396 TYR CA HA sing N N 397 TYR C O doub N N 398 TYR C OXT sing N N 399 TYR CB CG sing N N 400 TYR CB HB2 sing N N 401 TYR CB HB3 sing N N 402 TYR CG CD1 doub Y N 403 TYR CG CD2 sing Y N 404 TYR CD1 CE1 sing Y N 405 TYR CD1 HD1 sing N N 406 TYR CD2 CE2 doub Y N 407 TYR CD2 HD2 sing N N 408 TYR CE1 CZ doub Y N 409 TYR CE1 HE1 sing N N 410 TYR CE2 CZ sing Y N 411 TYR CE2 HE2 sing N N 412 TYR CZ OH sing N N 413 TYR OH HH sing N N 414 TYR OXT HXT sing N N 415 VAL N CA sing N N 416 VAL N H sing N N 417 VAL N H2 sing N N 418 VAL CA C sing N N 419 VAL CA CB sing N N 420 VAL CA HA sing N N 421 VAL C O doub N N 422 VAL C OXT sing N N 423 VAL CB CG1 sing N N 424 VAL CB CG2 sing N N 425 VAL CB HB sing N N 426 VAL CG1 HG11 sing N N 427 VAL CG1 HG12 sing N N 428 VAL CG1 HG13 sing N N 429 VAL CG2 HG21 sing N N 430 VAL CG2 HG22 sing N N 431 VAL CG2 HG23 sing N N 432 VAL OXT HXT sing N N 433 # _atom_sites.entry_id 1VTM _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'GLN P 99 - PRO P 100 OMEGA = 251.92 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION' # loop_ _atom_type.symbol C N O P S # loop_