HEADER TRANSCRIPTION/DNA 06-SEP-96 1VTO TITLE 1.9 A RESOLUTION REFINED STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE TITLE 2 OF TATAAAAG COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'); COMPND 3 CHAIN: C, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*C)-3'); COMPND 7 CHAIN: D, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TATA BINDING PROTEIN; COMPND 11 CHAIN: A, B; COMPND 12 SYNONYM: TRANSCRIPTION INITIATION FACTOR TFIID-1, TATA-BOX FACTOR 1, COMPND 13 TBP-1 SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 11 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 12 ORGANISM_TAXID: 3702 KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, KINKED, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.L.KIM,S.K.BURLEY REVDAT 4 13-MAR-24 1VTO 1 SOURCE REVDAT 3 27-DEC-23 1VTO 1 REMARK REVDAT 2 03-FEB-21 1VTO 1 AUTHOR JRNL REVDAT 1 13-JUL-11 1VTO 0 JRNL AUTH J.L.KIM,S.K.BURLEY JRNL TITL 1.9 A RESOLUTION REFINED STRUCTURE OF TBP RECOGNIZING THE JRNL TITL 2 MINOR GROOVE OF TATAAAAG JRNL REF NAT.STRUCT.BIOL. V. 1 638 1994 JRNL REFN ISSN 1072-8368 JRNL PMID 7634103 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 49515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2956 REMARK 3 NUCLEIC ACID ATOMS : 1134 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 521 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.570 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VTO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-97. REMARK 100 THE DEPOSITION ID IS D_1000003046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.20 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51793 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 5.20000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.20, VAPOR DIFFUSION, TEMPERATURE REMARK 280 277.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 73.50000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 11 REMARK 465 GLN A 199 REMARK 465 GLN A 200 REMARK 465 GLN B 1199 REMARK 465 GLN B 1200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DG C 201 O5' C5' REMARK 470 LYS A 55 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 78 H2 HOH C 584 1.24 REMARK 500 HZ3 LYS B 1085 H2 HOH F 793 1.26 REMARK 500 HZ1 LYS A 96 H2 HOH A 590 1.31 REMARK 500 HH12 ARG B 1178 H1 HOH B 744 1.32 REMARK 500 H42 DC E 313 O6 DG F 316 1.33 REMARK 500 H22 DG E 312 O2 DC F 317 1.43 REMARK 500 H3 DT C 203 N1 DA D 226 1.45 REMARK 500 H22 DG E 301 O2 DC F 328 1.48 REMARK 500 H22 DG C 201 O2 DC D 228 1.50 REMARK 500 H22 DG E 311 O2 DC F 318 1.52 REMARK 500 O2 DC E 302 H22 DG F 327 1.53 REMARK 500 H22 DG E 310 O2 DC F 319 1.53 REMARK 500 O6 DG E 301 H41 DC F 328 1.54 REMARK 500 H1 DG E 312 N3 DC F 317 1.54 REMARK 500 H1 DG E 301 N3 DC F 328 1.55 REMARK 500 O6 DG C 211 H42 DC D 218 1.55 REMARK 500 N3 DC E 313 H1 DG F 316 1.58 REMARK 500 H22 DG C 212 O2 DC D 217 1.58 REMARK 500 H1 HOH B 479 O HOH B 574 1.58 REMARK 500 O2 DC C 213 H22 DG D 216 1.58 REMARK 500 O4 DT C 203 H61 DA D 226 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H1 HOH A 693 H1 HOH B 613 2647 1.18 REMARK 500 O HOH A 693 H1 HOH B 613 2647 1.19 REMARK 500 N7 DG E 311 HH22 ARG A 65 2657 1.21 REMARK 500 HE21 GLN A 46 O HOH B 885 2647 1.31 REMARK 500 O6 DG E 311 HH12 ARG A 65 2657 1.49 REMARK 500 H1 HOH E 662 O HOH A 601 2657 1.50 REMARK 500 O HOH D 622 H2 HOH F 674 2546 1.55 REMARK 500 O HOH A 693 O HOH B 613 2647 2.03 REMARK 500 OP1 DA E 308 ND2 ASN A 49 2657 2.09 REMARK 500 N7 DG E 311 NH2 ARG A 65 2657 2.13 REMARK 500 OP2 DA E 309 O HOH A 824 2657 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT D 215 C5 DT D 215 C7 0.041 REMARK 500 DG D 216 C5' DG D 216 C4' 0.049 REMARK 500 DT F 322 C5 DT F 322 C7 0.040 REMARK 500 CYS B1122 CB CYS B1122 SG -0.135 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 201 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC C 202 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 DT C 203 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT C 203 C4 - C5 - C6 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA C 207 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG D 216 O4' - C1' - C2' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC D 219 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DC D 219 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT D 222 C6 - C5 - C7 ANGL. DEV. = -4.0 DEGREES REMARK 500 DT D 223 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DT D 223 C6 - C5 - C7 ANGL. DEV. = -4.0 DEGREES REMARK 500 DA D 224 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT D 225 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA D 226 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG D 227 C4' - C3' - C2' ANGL. DEV. = -4.5 DEGREES REMARK 500 DG D 227 O4' - C1' - N9 ANGL. DEV. = 9.1 DEGREES REMARK 500 DC D 228 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC E 302 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT E 303 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA E 309 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG E 310 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DG E 310 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DC E 313 C1' - O4' - C4' ANGL. DEV. = -7.5 DEGREES REMARK 500 DC E 313 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC E 313 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC E 313 C6 - N1 - C2 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA E 314 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DA E 314 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT F 315 C6 - C5 - C7 ANGL. DEV. = -3.9 DEGREES REMARK 500 DT F 315 C3' - O3' - P ANGL. DEV. = 9.1 DEGREES REMARK 500 DG F 316 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 DC F 317 O4' - C4' - C3' ANGL. DEV. = -6.7 DEGREES REMARK 500 DC F 317 C5' - C4' - O4' ANGL. DEV. = 7.4 DEGREES REMARK 500 DC F 317 C1' - O4' - C4' ANGL. DEV. = -7.2 DEGREES REMARK 500 DC F 317 O4' - C1' - N1 ANGL. DEV. = 7.2 DEGREES REMARK 500 DC F 318 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DC F 319 O4' - C4' - C3' ANGL. DEV. = -3.8 DEGREES REMARK 500 DC F 319 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT F 320 C4 - C5 - C7 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT F 320 C6 - C5 - C7 ANGL. DEV. = -6.5 DEGREES REMARK 500 DT F 321 O4' - C4' - C3' ANGL. DEV. = -3.7 DEGREES REMARK 500 DT F 321 C6 - C5 - C7 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT F 322 C6 - C5 - C7 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT F 323 C6 - C5 - C7 ANGL. DEV. = -4.9 DEGREES REMARK 500 DT F 325 C6 - C5 - C7 ANGL. DEV. = -4.0 DEGREES REMARK 500 DA F 326 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC F 328 O4' - C4' - C3' ANGL. DEV. = -3.4 DEGREES REMARK 500 DC F 328 C1' - O4' - C4' ANGL. DEV. = -8.2 DEGREES REMARK 500 DC F 328 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 49 51.26 -101.12 REMARK 500 ALA A 58 40.15 -81.57 REMARK 500 LYS A 109 -163.60 -106.62 REMARK 500 CYS B1036 147.20 -170.30 REMARK 500 ARG B1048 -15.29 -49.81 REMARK 500 ALA B1058 47.81 -86.24 REMARK 500 LYS B1109 -159.81 -110.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA C 207 0.06 SIDE CHAIN REMARK 500 DG D 227 0.05 SIDE CHAIN REMARK 500 DC F 318 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1VTO A 11 200 UNP P28147 TF21_ARATH 11 200 DBREF 1VTO B 1011 1200 UNP P28147 TF21_ARATH 11 200 DBREF 1VTO C 201 214 PDB 1VTO 1VTO 201 214 DBREF 1VTO E 301 314 PDB 1VTO 1VTO 301 314 DBREF 1VTO D 215 228 PDB 1VTO 1VTO 215 228 DBREF 1VTO F 315 328 PDB 1VTO 1VTO 315 328 SEQRES 1 C 14 DG DC DT DA DT DA DA DA DA DG DG DG DC SEQRES 2 C 14 DA SEQRES 1 D 14 DT DG DC DC DC DT DT DT DT DA DT DA DG SEQRES 2 D 14 DC SEQRES 1 E 14 DG DC DT DA DT DA DA DA DA DG DG DG DC SEQRES 2 E 14 DA SEQRES 1 F 14 DT DG DC DC DC DT DT DT DT DA DT DA DG SEQRES 2 F 14 DC SEQRES 1 A 190 PRO VAL ASP LEU SER LYS HIS PRO SER GLY ILE VAL PRO SEQRES 2 A 190 THR LEU GLN ASN ILE VAL SER THR VAL ASN LEU ASP CYS SEQRES 3 A 190 LYS LEU ASP LEU LYS ALA ILE ALA LEU GLN ALA ARG ASN SEQRES 4 A 190 ALA GLU TYR ASN PRO LYS ARG PHE ALA ALA VAL ILE MET SEQRES 5 A 190 ARG ILE ARG GLU PRO LYS THR THR ALA LEU ILE PHE ALA SEQRES 6 A 190 SER GLY LYS MET VAL CYS THR GLY ALA LYS SER GLU ASP SEQRES 7 A 190 PHE SER LYS MET ALA ALA ARG LYS TYR ALA ARG ILE VAL SEQRES 8 A 190 GLN LYS LEU GLY PHE PRO ALA LYS PHE LYS ASP PHE LYS SEQRES 9 A 190 ILE GLN ASN ILE VAL GLY SER CYS ASP VAL LYS PHE PRO SEQRES 10 A 190 ILE ARG LEU GLU GLY LEU ALA TYR SER HIS ALA ALA PHE SEQRES 11 A 190 SER SER TYR GLU PRO GLU LEU PHE PRO GLY LEU ILE TYR SEQRES 12 A 190 ARG MET LYS VAL PRO LYS ILE VAL LEU LEU ILE PHE VAL SEQRES 13 A 190 SER GLY LYS ILE VAL ILE THR GLY ALA LYS MET ARG ASP SEQRES 14 A 190 GLU THR TYR LYS ALA PHE GLU ASN ILE TYR PRO VAL LEU SEQRES 15 A 190 SER GLU PHE ARG LYS ILE GLN GLN SEQRES 1 B 190 PRO VAL ASP LEU SER LYS HIS PRO SER GLY ILE VAL PRO SEQRES 2 B 190 THR LEU GLN ASN ILE VAL SER THR VAL ASN LEU ASP CYS SEQRES 3 B 190 LYS LEU ASP LEU LYS ALA ILE ALA LEU GLN ALA ARG ASN SEQRES 4 B 190 ALA GLU TYR ASN PRO LYS ARG PHE ALA ALA VAL ILE MET SEQRES 5 B 190 ARG ILE ARG GLU PRO LYS THR THR ALA LEU ILE PHE ALA SEQRES 6 B 190 SER GLY LYS MET VAL CYS THR GLY ALA LYS SER GLU ASP SEQRES 7 B 190 PHE SER LYS MET ALA ALA ARG LYS TYR ALA ARG ILE VAL SEQRES 8 B 190 GLN LYS LEU GLY PHE PRO ALA LYS PHE LYS ASP PHE LYS SEQRES 9 B 190 ILE GLN ASN ILE VAL GLY SER CYS ASP VAL LYS PHE PRO SEQRES 10 B 190 ILE ARG LEU GLU GLY LEU ALA TYR SER HIS ALA ALA PHE SEQRES 11 B 190 SER SER TYR GLU PRO GLU LEU PHE PRO GLY LEU ILE TYR SEQRES 12 B 190 ARG MET LYS VAL PRO LYS ILE VAL LEU LEU ILE PHE VAL SEQRES 13 B 190 SER GLY LYS ILE VAL ILE THR GLY ALA LYS MET ARG ASP SEQRES 14 B 190 GLU THR TYR LYS ALA PHE GLU ASN ILE TYR PRO VAL LEU SEQRES 15 B 190 SER GLU PHE ARG LYS ILE GLN GLN FORMUL 7 HOH *521(H2 O) HELIX 1 1 LEU A 40 GLN A 46 1 7 HELIX 2 2 GLU A 87 GLN A 46 1 -40 HELIX 3 3 LEU A 130 SER A 136 1 7 HELIX 4 4 ARG A 178 GLU A 194 1 17 HELIX 5 5 LEU B 1040 GLN B 1046 1 7 HELIX 6 6 GLU B 1087 LYS B 1103 1 17 HELIX 7 7 LEU B 1130 SER B 1136 1 7 HELIX 8 8 ARG B 1178 GLU B 1194 1 17 SHEET 1 1 9 ALA A 50 TYR A 52 0 SHEET 2 1 9 VAL A 60 ILE A 64 -1 N ILE A 61 O GLU A 51 SHEET 3 1 9 THR A 69 ILE A 73 -1 N ALA A 71 O MET A 62 SHEET 4 1 9 LYS A 78 ALA A 84 -1 N THR A 82 O THR A 70 SHEET 5 1 9 THR A 24 ASN A 33 -1 O SER A 30 N CYS A 81 SHEET 6 1 9 LYS A 55 ASP A 123 -1 SHEET 7 1 9 LYS A 169 ALA A 175 -1 N ILE A 170 O CYS A 122 SHEET 8 1 9 ILE A 160 ILE A 164 -1 O VAL A 161 N THR A 173 SHEET 9 1 9 LEU A 151 MET A 155 -1 N TYR A 97 O LEU A 162 SHEET 1 2 8 VAL B1060 ILE B1064 0 SHEET 2 2 8 THR B1069 ILE B1073 -1 N ALA B1071 O MET B1062 SHEET 3 2 8 LYS B1078 ALA B1084 -1 N THR B1082 O THR B1070 SHEET 4 2 8 THR B1024 ASN B1033 -1 O SER B1030 N CYS B1081 SHEET 5 2 8 LYS B1111 ASP B1123 -1 SHEET 6 2 8 LYS B1169 ALA B1175 -1 N ILE B1172 O GLY B1120 SHEET 7 2 8 ILE B1160 ILE B1164 -1 O VAL B1161 N THR B1173 SHEET 8 2 8 LEU B1151 MET B1155 -1 N TYR B1153 O LEU B1162 CISPEP 1 GLU A 66 PRO A 67 0 -0.86 CISPEP 2 VAL A 157 PRO A 158 0 -0.81 CISPEP 3 GLU B 1066 PRO B 1067 0 -1.01 CISPEP 4 VAL B 1157 PRO B 1158 0 -0.42 CRYST1 42.000 147.000 57.000 90.00 90.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023810 0.000000 0.000208 0.00000 SCALE2 0.000000 0.006803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017545 0.00000