HEADER RNA 11-JUN-85 1VTQ TITLE THREE-DIMENSIONAL STRUCTURE OF YEAST T-RNA-ASP. I. STRUCTURE TITLE 2 DETERMINATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-RNA-ASP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS T-RNA, SINGLE STRAND, LOOPS, RNA EXPDTA X-RAY DIFFRACTION AUTHOR M.B.COMARMOND,R.GIEGE,J.C.THIERRY,D.MORAS,J.FISCHER REVDAT 3 27-DEC-23 1VTQ 1 LINK REVDAT 2 30-MAY-18 1VTQ 1 COMPND SOURCE REVDAT 1 13-JUL-11 1VTQ 0 JRNL AUTH M.B.COMARMOND,R.GIEGE,J.C.THIERRY,D.MORAS,J.FISCHER JRNL TITL THREE-DIMENSIONAL STRUCTURE OF YEAST T-RNA-ASP. I. STRUCTURE JRNL TITL 2 DETERMINATION JRNL REF ACTA CRYSTALLOGR.,SECT.B V. 42 272 1986 JRNL REFN ISSN 0108-7681 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.MORAS,A.-C.DOCK,P.DUMAS,E.WESTHOF,P.ROMBY,J.-P.EBEL, REMARK 1 AUTH 2 R.GIEGE REMARK 1 TITL ANTICODON-ANTICODON INTERACTION INDUCES CONFORMATIONAL REMARK 1 TITL 2 CHANGES IN T-RNA. YEAST T-RNA-ASP II, A MODEL FOR REMARK 1 TITL 3 T-RNA-M-RNA RECOGNITION REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 83 932 1986 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.WESTHOF,P.DUMAS,D.MORAS REMARK 1 TITL CRYSTALLOGRAPHIC REFINEMENT OF YEAST ASPARTIC ACID TRANSFER REMARK 1 TITL 2 RNA REMARK 1 REF J.MOL.BIOL. V. 184 119 1985 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH P.DUMAS,J.P.EBEL,R.GIEGE,D.MORAS,J.C.THIERRY,E.WESTHOF REMARK 1 TITL CRYSTAL STRUCTURE OF YEAST T-RNA-ASP. ATOMIC COORDINATES REMARK 1 REF BIOCHIMIE V. 67 597 1985 REMARK 1 REFN ISSN 0300-9084 REMARK 1 REFERENCE 4 REMARK 1 AUTH E.WESTHOF,P.DUMAS,D.MORAS REMARK 1 TITL LOOP STEREOCHEMISTRY AND DYNAMICS IN TRANSFER RNA REMARK 1 REF J.BIOMOL.STRUCT.DYN. V. 1 337 1983 REMARK 1 REFN ISSN 0739-1102 REMARK 1 REFERENCE 5 REMARK 1 AUTH D.MORAS,M.B.COMARMOND,J.FISCHER,R.WEISS,J.C.THIERRY, REMARK 1 AUTH 2 J.P.EBEL,R.GIEGE REMARK 1 TITL CRYSTAL STRUCTURE OF YEAST T-RNA-ASP REMARK 1 REF NATURE V. 288 669 1980 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 6 REMARK 1 AUTH R.GIEGE,D.MORAS,J.C.THIERRY REMARK 1 TITL YEAST TRANSFER RNA-ASP. A NEW HIGH-RESOLUTION X-RAY REMARK 1 TITL 2 DIFFRACTING CRYSTAL FORM OF A TRANSFER RNA REMARK 1 REF J.MOL.BIOL. V. 115 91 1977 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NUCLSQ REMARK 3 AUTHORS : WESTHOF,DUMAS,MORAS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 4585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1602 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BOND DISTANCE (A) : NULL ; NULL REMARK 3 SUGAR-BASE BOND ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BONDS DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BONDS (A**2) : NULL ; NULL REMARK 3 SUGAR-BASE ANGLES (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BONDS (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 TWO NON-ISOMORPHOUS INDEPENDENT CRYSTAL FORMS, REFERRED TO REMARK 3 AS A FORM AND B FORM, HAVE BEEN GROWN AND SOLVED REMARK 3 INDEPENDENTLY. THE COORDINATES PRESENTED IN THIS ENTRY ARE REMARK 3 FOR THE B FORM. REMARK 4 REMARK 4 1VTQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000003047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.020930 0.000000 1.000000 74.74959 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.74959 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 -0.020930 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.14954 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.99973 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 -0.31551 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.14954 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.99973 REMARK 290 SMTRY3 6 0.020930 0.000000 1.000000 74.43408 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.14954 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.99973 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.43408 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.14954 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 33.99973 REMARK 290 SMTRY3 8 -0.020930 0.000000 -1.000000 -0.31551 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N7 G A 17 O4' C A 74 5455 0.94 REMARK 500 O5' G A 17 O2 C A 74 5455 1.00 REMARK 500 OP2 G A 17 O4' A A 75 5455 1.06 REMARK 500 C8 G A 17 C1' C A 74 5455 1.22 REMARK 500 O4' C A 60 OP1 A A 75 5455 1.34 REMARK 500 C4' C A 60 OP1 A A 75 5455 1.53 REMARK 500 P G A 17 O2 C A 74 5455 1.54 REMARK 500 N7 G A 17 C1' C A 74 5455 1.66 REMARK 500 C8 G A 17 O4' C A 74 5455 1.70 REMARK 500 OP2 G A 17 C1' A A 75 5455 1.75 REMARK 500 OP1 G A 17 C2' C A 74 5455 1.78 REMARK 500 N7 G A 17 C4' C A 74 5455 1.81 REMARK 500 C4' H2U A 16 N3 A A 75 5455 1.89 REMARK 500 P G A 17 O4' A A 75 5455 2.00 REMARK 500 O3' H2U A 16 N9 A A 75 5455 2.07 REMARK 500 OP1 G A 17 C2 C A 74 5455 2.07 REMARK 500 OP1 G A 17 O2 C A 74 5455 2.12 REMARK 500 OP1 G A 17 N1 C A 74 5455 2.13 REMARK 500 O4' H2U A 16 N3 A A 75 5455 2.13 REMARK 500 C5' C A 60 OP1 A A 75 5455 2.18 REMARK 500 O5' G A 17 C2 C A 74 5455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 C A 73 C5' C A 73 C4' -0.056 REMARK 500 C A 73 C2 C A 73 O2 -0.056 REMARK 500 C A 73 C4 C A 73 N4 -0.059 REMARK 500 C A 73 C2 C A 73 N3 0.055 REMARK 500 C A 73 N3 C A 73 C4 -0.067 REMARK 500 C A 73 C4 C A 73 C5 0.089 REMARK 500 C A 73 C5 C A 73 C6 0.087 REMARK 500 C A 73 O3' C A 74 P -0.086 REMARK 500 C A 74 C5' C A 74 C4' -0.045 REMARK 500 C A 74 O4' C A 74 C4' 0.075 REMARK 500 C A 74 C4 C A 74 N4 0.062 REMARK 500 C A 74 N1 C A 74 C6 -0.063 REMARK 500 C A 74 O3' A A 75 P -0.085 REMARK 500 A A 75 O5' A A 75 C5' -0.056 REMARK 500 A A 75 C2' A A 75 C1' -0.080 REMARK 500 A A 75 O4' A A 75 C4' 0.075 REMARK 500 A A 75 C2' A A 75 O2' 0.086 REMARK 500 A A 75 N3 A A 75 C4 0.092 REMARK 500 A A 75 N7 A A 75 C8 -0.069 REMARK 500 A A 75 N9 A A 75 C4 -0.061 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U A 1 N1 - C2 - N3 ANGL. DEV. = 3.6 DEGREES REMARK 500 U A 1 C2 - N3 - C4 ANGL. DEV. = -4.8 DEGREES REMARK 500 U A 1 N3 - C4 - C5 ANGL. DEV. = 4.4 DEGREES REMARK 500 U A 1 C3' - O3' - P ANGL. DEV. = 18.2 DEGREES REMARK 500 C A 2 OP1 - P - OP2 ANGL. DEV. = -10.5 DEGREES REMARK 500 C A 3 O5' - C5' - C4' ANGL. DEV. = -4.9 DEGREES REMARK 500 G A 4 OP1 - P - OP2 ANGL. DEV. = -10.1 DEGREES REMARK 500 G A 4 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 U A 5 N1 - C2 - N3 ANGL. DEV. = 4.8 DEGREES REMARK 500 U A 5 C2 - N3 - C4 ANGL. DEV. = -6.8 DEGREES REMARK 500 U A 5 N3 - C4 - C5 ANGL. DEV. = 5.5 DEGREES REMARK 500 G A 6 C5 - C6 - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 A A 7 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 U A 8 O5' - C5' - C4' ANGL. DEV. = -5.1 DEGREES REMARK 500 U A 8 P - O5' - C5' ANGL. DEV. = -10.8 DEGREES REMARK 500 U A 8 C2 - N3 - C4 ANGL. DEV. = -4.5 DEGREES REMARK 500 U A 8 N3 - C4 - C5 ANGL. DEV. = 4.4 DEGREES REMARK 500 A A 9 O5' - C5' - C4' ANGL. DEV. = -5.8 DEGREES REMARK 500 A A 9 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 G A 10 O5' - C5' - C4' ANGL. DEV. = -8.4 DEGREES REMARK 500 U A 11 O5' - C5' - C4' ANGL. DEV. = -12.0 DEGREES REMARK 500 U A 11 C2 - N3 - C4 ANGL. DEV. = -3.9 DEGREES REMARK 500 U A 11 N3 - C4 - C5 ANGL. DEV. = 4.3 DEGREES REMARK 500 U A 12 C2 - N3 - C4 ANGL. DEV. = -4.3 DEGREES REMARK 500 U A 12 N3 - C4 - C5 ANGL. DEV. = 4.6 DEGREES REMARK 500 A A 15 N1 - C2 - N3 ANGL. DEV. = -3.3 DEGREES REMARK 500 H2U A 16 C3' - O3' - P ANGL. DEV. = -9.7 DEGREES REMARK 500 G A 17 O5' - C5' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 G A 18 OP1 - P - OP2 ANGL. DEV. = -9.1 DEGREES REMARK 500 G A 18 C3' - O3' - P ANGL. DEV. = 12.8 DEGREES REMARK 500 C A 20 N3 - C4 - C5 ANGL. DEV. = -2.5 DEGREES REMARK 500 A A 21 C3' - O3' - P ANGL. DEV. = 8.0 DEGREES REMARK 500 G A 22 OP1 - P - OP2 ANGL. DEV. = -10.0 DEGREES REMARK 500 G A 22 O5' - C5' - C4' ANGL. DEV. = -5.5 DEGREES REMARK 500 A A 23 C6 - N1 - C2 ANGL. DEV. = 3.7 DEGREES REMARK 500 A A 23 N1 - C2 - N3 ANGL. DEV. = -3.4 DEGREES REMARK 500 A A 23 C5 - C6 - N1 ANGL. DEV. = -3.1 DEGREES REMARK 500 A A 24 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 A A 24 C6 - N1 - C2 ANGL. DEV. = 4.1 DEGREES REMARK 500 A A 24 N1 - C2 - N3 ANGL. DEV. = -3.2 DEGREES REMARK 500 A A 24 C5 - C6 - N1 ANGL. DEV. = -3.2 DEGREES REMARK 500 U A 25 O5' - C5' - C4' ANGL. DEV. = -5.1 DEGREES REMARK 500 U A 25 C2 - N3 - C4 ANGL. DEV. = -3.9 DEGREES REMARK 500 U A 25 N3 - C4 - C5 ANGL. DEV. = 4.0 DEGREES REMARK 500 G A 26 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 G A 26 C5 - C6 - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 G A 27 C3' - O3' - P ANGL. DEV. = -7.5 DEGREES REMARK 500 G A 28 O5' - P - OP2 ANGL. DEV. = 8.0 DEGREES REMARK 500 G A 28 O5' - C5' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 G A 28 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 125 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1VTQ A 1 75 PDB 1VTQ 1VTQ 1 75 SEQRES 1 A 75 U C C G U G A U A G U U PSU SEQRES 2 A 75 A A H2U G G H2U C A G A A U G SEQRES 3 A 75 G G C G C PSU U G U C 1MG C G SEQRES 4 A 75 U G C C A G A U 5MC G G G G SEQRES 5 A 75 5MU PSU C A A U U C C C C G U SEQRES 6 A 75 C G C G G A G C C A MODRES 1VTQ PSU A 13 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1VTQ H2U A 16 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1VTQ H2U A 19 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1VTQ PSU A 32 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1VTQ 1MG A 37 G 1N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1VTQ 5MC A 48 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1VTQ 5MU A 53 U 5-METHYLURIDINE 5'-MONOPHOSPHATE MODRES 1VTQ PSU A 54 U PSEUDOURIDINE-5'-MONOPHOSPHATE HET PSU A 13 20 HET H2U A 16 20 HET H2U A 19 20 HET PSU A 32 20 HET 1MG A 37 24 HET 5MC A 48 21 HET 5MU A 53 21 HET PSU A 54 20 HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM H2U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE HETNAM 1MG 1N-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM 5MC 5-METHYLCYTIDINE-5'-MONOPHOSPHATE HETNAM 5MU 5-METHYLURIDINE 5'-MONOPHOSPHATE FORMUL 1 PSU 3(C9 H13 N2 O9 P) FORMUL 1 H2U 2(C9 H15 N2 O9 P) FORMUL 1 1MG C11 H16 N5 O8 P FORMUL 1 5MC C10 H16 N3 O8 P FORMUL 1 5MU C10 H15 N2 O9 P LINK O3' U A 12 P PSU A 13 1555 1555 1.59 LINK O3' PSU A 13 P A A 14 1555 1555 1.59 LINK O3' A A 15 P H2U A 16 1555 1555 1.60 LINK O3' H2U A 16 P G A 17 1555 1555 1.63 LINK O3' G A 18 P H2U A 19 1555 1555 1.59 LINK O3' H2U A 19 P C A 20 1555 1555 1.64 LINK O3' C A 31 P PSU A 32 1555 1555 1.61 LINK O3' PSU A 32 P U A 33 1555 1555 1.59 LINK O3' C A 36 P 1MG A 37 1555 1555 1.63 LINK O3' 1MG A 37 P C A 38 1555 1555 1.62 LINK O3' U A 47 P 5MC A 48 1555 1555 1.63 LINK O3' 5MC A 48 P G A 49 1555 1555 1.59 LINK O3' G A 52 P 5MU A 53 1555 1555 1.62 LINK O3' 5MU A 53 P PSU A 54 1555 1555 1.62 LINK O3' PSU A 54 P C A 55 1555 1555 1.61 CRYST1 60.300 68.000 149.500 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016584 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014706 0.000000 0.00000 SCALE3 0.000070 0.000000 0.006689 0.00000