data_1VTT
# 
_entry.id   1VTT 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.383 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1VTT         pdb_00001vtt 10.2210/pdb1vtt/pdb 
NDB   ZDF013       ?            ?                   
RCSB  RCSB003050   ?            ?                   
WWPDB D_1000003050 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2011-07-13 
2 'Structure model' 1 1 2023-12-27 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Data collection'     
2 2 'Structure model' 'Database references' 
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 2 'Structure model' chem_comp_atom 
2 2 'Structure model' chem_comp_bond 
3 2 'Structure model' database_2     
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 2 'Structure model' '_database_2.pdbx_DOI'                
2 2 'Structure model' '_database_2.pdbx_database_accession' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1VTT 
_pdbx_database_status.recvd_initial_deposition_date   1988-08-18 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Ho, P.S.'            1 
'Frederick, C.A.'     2 
'Quigley, G.J.'       3 
'Van Der Marel, G.A.' 4 
'Van Boom, J.H.'      5 
'Wang, A.H.-J.'       6 
'Rich, A.'            7 
# 
_citation.id                        primary 
_citation.title                     
'GT Wobble Base-Pairing in Z-DNA at 1.0 Angstrom Atomic Resolution: The Crystal Structure of d(CGCGTG)' 
_citation.journal_abbrev            'Embo J.' 
_citation.journal_volume            4 
_citation.page_first                3617 
_citation.page_last                 3623 
_citation.year                      1985 
_citation.journal_id_ASTM           EMJODG 
_citation.country                   UK 
_citation.journal_id_ISSN           0261-4189 
_citation.journal_id_CSD            0897 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   4092690 
_citation.pdbx_database_id_DOI      ? 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Ho, P.S.'            1 ? 
primary 'Frederick, C.A.'     2 ? 
primary 'Quigley, G.J.'       3 ? 
primary 'Van Der Marel, G.A.' 4 ? 
primary 'Van Boom, J.H.'      5 ? 
primary 'Wang, A.H.-J.'       6 ? 
primary 'Rich, A.'            7 ? 
# 
_entity.id                         1 
_entity.type                       polymer 
_entity.src_method                 syn 
_entity.pdbx_description           
;DNA (5'-D(*CP*GP*CP*GP*TP*G)-3')
;
_entity.formula_weight             1825.216 
_entity.pdbx_number_of_molecules   2 
_entity.pdbx_ec                    ? 
_entity.pdbx_mutation              ? 
_entity.pdbx_fragment              ? 
_entity.details                    ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DC)(DG)(DT)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGTG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 DC n 
1 2 DG n 
1 3 DC n 
1 4 DG n 
1 5 DT n 
1 6 DG n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'  307.197 
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P' 322.208 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 DC 1 1 1 DC C A . n 
A 1 2 DG 2 2 2 DG G A . n 
A 1 3 DC 3 3 3 DC C A . n 
A 1 4 DG 4 4 4 DG G A . n 
A 1 5 DT 5 5 5 DT T A . n 
A 1 6 DG 6 6 6 DG G A . n 
B 1 1 DC 1 1 1 DC C B . n 
B 1 2 DG 2 2 2 DG G B . n 
B 1 3 DC 3 3 3 DC C B . n 
B 1 4 DG 4 4 4 DG G B . n 
B 1 5 DT 5 5 5 DT T B . n 
B 1 6 DG 6 6 6 DG G B . n 
# 
_cell.entry_id           1VTT 
_cell.length_a           17.450 
_cell.length_b           31.630 
_cell.length_c           45.560 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         1VTT 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          1VTT 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_percent_sol   28.58 
_exptl_crystal.density_Matthews      1.72 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION' 
_exptl_crystal_grow.temp            ? 
_exptl_crystal_grow.temp_details    'ROOM TEMPERATURE' 
_exptl_crystal_grow.pH              7.00 
_exptl_crystal_grow.pdbx_details    'pH 7.00, VAPOR DIFFUSION' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 WATER           1  2  3  
1 2 1 MPD             4  5  6  
1 3 1 'NA CACODYLATE' 7  8  9  
1 4 1 MGCL2           10 11 12 
1 5 2 WATER           13 14 15 
1 6 2 MPD             16 17 18 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           288.00 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               DIFFRACTOMETER 
_diffrn_detector.type                   'NICOLET P3' 
_diffrn_detector.pdbx_collection_date   ? 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   . 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      ? 
_diffrn_source.type                        ? 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     1VTT 
_reflns.observed_criterion_sigma_I   1.000 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             ? 
_reflns.d_resolution_high            ? 
_reflns.number_obs                   10964 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         79.000 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
# 
_refine.entry_id                                 1VTT 
_refine.ls_number_reflns_obs                     ? 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             ? 
_refine.ls_d_res_high                            1.000 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_obs                          0.1950000 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       ? 
_refine.ls_R_factor_R_free                       ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   242 
_refine_hist.pdbx_number_atoms_ligand         0 
_refine_hist.number_atoms_solvent             0 
_refine_hist.number_atoms_total               242 
_refine_hist.d_res_high                       1.000 
_refine_hist.d_res_low                        . 
# 
_database_PDB_matrix.entry_id          1VTT 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1VTT 
_struct.title                     
'GT Wobble Base-Pairing in Z-DNA at 1.0 Angstrom Atomic Resolution: The Crystal Structure of d(CGCGTG)' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1VTT 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'Z-DNA, DOUBLE HELIX, MISMATCHED, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1VTT 
_struct_ref.pdbx_db_accession          1VTT 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   CGCGTG 
_struct_ref.pdbx_db_isoform            ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1VTT A 1 ? 6 ? 1VTT 1 ? 6 ? 1 6 
2 1 1VTT B 1 ? 6 ? 1VTT 1 ? 6 ? 1 6 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_and_software_defined_assembly 
_pdbx_struct_assembly.method_details       PISA 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 640  ? 
1 MORE         -7   ? 
1 'SSA (A^2)'  2340 ? 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id                    1 
_struct_biol.pdbx_parent_biol_id   ? 
_struct_biol.details               ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog2  hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog3  hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog4  hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DT 5 O2 ? ? A DG 2 B DT 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog5  hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DT 5 N3 ? ? A DG 2 B DT 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog6  hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog7  hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog8  hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog9  hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DG 2 O6 ? ? A DT 5 B DG 2 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog13 hydrog ? ? A DT 5 O2 ? ? ? 1_555 B DG 2 N1 ? ? A DT 5 B DG 2 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1  1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 1.607 1.512 0.095  0.007 N 
2  1 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.620 1.529 0.091  0.010 N 
3  1 "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.621 1.519 0.102  0.010 N 
4  1 N1    A DC 1 ? ? C2    A DC 1 ? ? 1.478 1.397 0.081  0.010 N 
5  1 N1    A DC 1 ? ? C6    A DC 1 ? ? 1.328 1.367 -0.039 0.006 N 
6  1 C4    A DC 1 ? ? C5    A DC 1 ? ? 1.490 1.425 0.065  0.008 N 
7  1 P     A DG 2 ? ? OP2   A DG 2 ? ? 1.365 1.485 -0.120 0.017 N 
8  1 "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.635 1.529 0.106  0.010 N 
9  1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? 1.465 1.516 -0.051 0.008 N 
10 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? 1.504 1.420 0.084  0.011 N 
11 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.352 1.446 -0.094 0.010 N 
12 1 N1    A DG 2 ? ? C2    A DG 2 ? ? 1.315 1.373 -0.058 0.008 N 
13 1 C2    A DG 2 ? ? N3    A DG 2 ? ? 1.383 1.323 0.060  0.008 N 
14 1 C6    A DG 2 ? ? N1    A DG 2 ? ? 1.279 1.391 -0.112 0.007 N 
15 1 N7    A DG 2 ? ? C8    A DG 2 ? ? 1.351 1.305 0.046  0.006 N 
16 1 C8    A DG 2 ? ? N9    A DG 2 ? ? 1.321 1.374 -0.053 0.007 N 
17 1 N9    A DG 2 ? ? C4    A DG 2 ? ? 1.457 1.375 0.082  0.008 N 
18 1 C2    A DG 2 ? ? N2    A DG 2 ? ? 1.223 1.341 -0.118 0.010 N 
19 1 "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 1.560 1.512 0.048  0.007 N 
20 1 "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.694 1.519 0.175  0.010 N 
21 1 N3    A DC 3 ? ? C4    A DC 3 ? ? 1.428 1.335 0.093  0.007 N 
22 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.413 1.509 -0.096 0.011 N 
23 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.654 1.529 0.125  0.010 N 
24 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 1.433 1.516 -0.083 0.008 N 
25 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? 1.494 1.420 0.074  0.011 N 
26 1 N7    A DG 4 ? ? C8    A DG 4 ? ? 1.375 1.305 0.070  0.006 N 
27 1 P     A DT 5 ? ? OP2   A DT 5 ? ? 1.379 1.485 -0.106 0.017 N 
28 1 "C4'" A DT 5 ? ? "C3'" A DT 5 ? ? 1.612 1.529 0.083  0.010 N 
29 1 "C2'" A DT 5 ? ? "C1'" A DT 5 ? ? 1.619 1.519 0.100  0.010 N 
30 1 C2    A DT 5 ? ? N3    A DT 5 ? ? 1.421 1.373 0.048  0.008 N 
31 1 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? 1.435 1.516 -0.081 0.008 N 
32 1 "O3'" A DG 6 ? ? "C3'" A DG 6 ? ? 1.521 1.435 0.086  0.013 N 
33 1 C2    A DG 6 ? ? N2    A DG 6 ? ? 1.274 1.341 -0.067 0.010 N 
34 1 "C5'" B DC 1 ? ? "C4'" B DC 1 ? ? 1.565 1.512 0.053  0.007 N 
35 1 "C4'" B DC 1 ? ? "C3'" B DC 1 ? ? 1.618 1.529 0.089  0.010 N 
36 1 N1    B DC 1 ? ? C6    B DC 1 ? ? 1.408 1.367 0.041  0.006 N 
37 1 N3    B DC 1 ? ? C4    B DC 1 ? ? 1.399 1.335 0.064  0.007 N 
38 1 "C5'" B DG 2 ? ? "C4'" B DG 2 ? ? 1.438 1.509 -0.071 0.011 N 
39 1 "C4'" B DG 2 ? ? "C3'" B DG 2 ? ? 1.618 1.529 0.089  0.010 N 
40 1 N3    B DG 2 ? ? C4    B DG 2 ? ? 1.400 1.350 0.050  0.007 N 
41 1 C4    B DG 2 ? ? C5    B DG 2 ? ? 1.334 1.379 -0.045 0.007 N 
42 1 C6    B DG 2 ? ? N1    B DG 2 ? ? 1.339 1.391 -0.052 0.007 N 
43 1 "O3'" B DG 2 ? ? P     B DC 3 ? ? 1.517 1.607 -0.090 0.012 Y 
44 1 "C5'" B DC 3 ? ? "C4'" B DC 3 ? ? 1.557 1.512 0.045  0.007 N 
45 1 "C4'" B DC 3 ? ? "C3'" B DC 3 ? ? 1.589 1.529 0.060  0.010 N 
46 1 "C2'" B DC 3 ? ? "C1'" B DC 3 ? ? 1.581 1.519 0.062  0.010 N 
47 1 N1    B DC 3 ? ? C6    B DC 3 ? ? 1.406 1.367 0.039  0.006 N 
48 1 C2    B DC 3 ? ? N3    B DC 3 ? ? 1.430 1.353 0.077  0.008 N 
49 1 N3    B DC 3 ? ? C4    B DC 3 ? ? 1.387 1.335 0.052  0.007 N 
50 1 P     B DG 4 ? ? OP1   B DG 4 ? ? 1.338 1.485 -0.147 0.017 N 
51 1 "C4'" B DG 4 ? ? "C3'" B DG 4 ? ? 1.611 1.529 0.082  0.010 N 
52 1 "C3'" B DG 4 ? ? "C2'" B DG 4 ? ? 1.436 1.516 -0.080 0.008 N 
53 1 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? 1.502 1.420 0.082  0.011 N 
54 1 C6    B DG 4 ? ? N1    B DG 4 ? ? 1.336 1.391 -0.055 0.007 N 
55 1 C5    B DG 4 ? ? N7    B DG 4 ? ? 1.346 1.388 -0.042 0.006 N 
56 1 C8    B DG 4 ? ? N9    B DG 4 ? ? 1.327 1.374 -0.047 0.007 N 
57 1 C2    B DG 4 ? ? N2    B DG 4 ? ? 1.267 1.341 -0.074 0.010 N 
58 1 P     B DT 5 ? ? "O5'" B DT 5 ? ? 1.523 1.593 -0.070 0.010 N 
59 1 "C4'" B DT 5 ? ? "C3'" B DT 5 ? ? 1.625 1.529 0.096  0.010 N 
60 1 "C2'" B DT 5 ? ? "C1'" B DT 5 ? ? 1.635 1.519 0.116  0.010 N 
61 1 "O4'" B DT 5 ? ? "C4'" B DT 5 ? ? 1.527 1.449 0.078  0.009 N 
62 1 "O3'" B DT 5 ? ? "C3'" B DT 5 ? ? 1.536 1.435 0.101  0.013 N 
63 1 N1    B DT 5 ? ? C2    B DT 5 ? ? 1.443 1.376 0.067  0.008 N 
64 1 P     B DG 6 ? ? OP1   B DG 6 ? ? 1.377 1.485 -0.108 0.017 N 
65 1 P     B DG 6 ? ? "O5'" B DG 6 ? ? 1.657 1.593 0.064  0.010 N 
66 1 "C4'" B DG 6 ? ? "C3'" B DG 6 ? ? 1.639 1.529 0.110  0.010 N 
67 1 "C3'" B DG 6 ? ? "C2'" B DG 6 ? ? 1.452 1.516 -0.064 0.008 N 
68 1 "O3'" B DG 6 ? ? "C3'" B DG 6 ? ? 1.516 1.435 0.081  0.013 N 
69 1 N1    B DG 6 ? ? C2    B DG 6 ? ? 1.301 1.373 -0.072 0.008 N 
70 1 C2    B DG 6 ? ? N3    B DG 6 ? ? 1.395 1.323 0.072  0.008 N 
71 1 C6    B DG 6 ? ? N1    B DG 6 ? ? 1.325 1.391 -0.066 0.007 N 
72 1 C8    B DG 6 ? ? N9    B DG 6 ? ? 1.328 1.374 -0.046 0.007 N 
73 1 N9    B DG 6 ? ? C4    B DG 6 ? ? 1.470 1.375 0.095  0.008 N 
74 1 C2    B DG 6 ? ? N2    B DG 6 ? ? 1.223 1.341 -0.118 0.010 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 97.34  102.40 -5.06 0.80 N 
2  1 N1    A DC 1 ? ? C2    A DC 1 ? ? N3    A DC 1 ? ? 114.89 119.20 -4.31 0.70 N 
3  1 C2    A DC 1 ? ? N3    A DC 1 ? ? C4    A DC 1 ? ? 126.82 119.90 6.92  0.50 N 
4  1 N3    A DC 1 ? ? C4    A DC 1 ? ? C5    A DC 1 ? ? 116.81 121.90 -5.09 0.40 N 
5  1 C5    A DC 1 ? ? C6    A DC 1 ? ? N1    A DC 1 ? ? 125.10 121.00 4.10  0.50 N 
6  1 N3    A DC 1 ? ? C2    A DC 1 ? ? O2    A DC 1 ? ? 127.37 121.90 5.47  0.70 N 
7  1 N3    A DC 1 ? ? C4    A DC 1 ? ? N4    A DC 1 ? ? 124.02 118.00 6.02  0.70 N 
8  1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P     A DG 2 ? ? 127.26 119.70 7.56  1.20 Y 
9  1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 101.33 104.50 -3.17 0.40 N 
10 1 "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? 110.54 103.10 7.44  0.90 N 
11 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 111.70 106.80 4.90  0.50 N 
12 1 N1    A DG 2 ? ? C2    A DG 2 ? ? N3    A DG 2 ? ? 120.03 123.90 -3.87 0.60 N 
13 1 C4    A DG 2 ? ? C5    A DG 2 ? ? C6    A DG 2 ? ? 114.17 118.80 -4.63 0.60 N 
14 1 C5    A DG 2 ? ? C6    A DG 2 ? ? N1    A DG 2 ? ? 115.73 111.50 4.23  0.50 N 
15 1 N1    A DG 2 ? ? C2    A DG 2 ? ? N2    A DG 2 ? ? 127.99 116.20 11.79 0.90 N 
16 1 N3    A DG 2 ? ? C2    A DG 2 ? ? N2    A DG 2 ? ? 111.90 119.90 -8.00 0.70 N 
17 1 N1    A DG 2 ? ? C6    A DG 2 ? ? O6    A DG 2 ? ? 124.90 119.90 5.00  0.60 N 
18 1 C5    A DG 2 ? ? C6    A DG 2 ? ? O6    A DG 2 ? ? 119.00 128.60 -9.60 0.60 N 
19 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P     A DC 3 ? ? 127.45 119.70 7.75  1.20 Y 
20 1 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 94.12  102.40 -8.28 0.80 N 
21 1 N3    A DC 3 ? ? C4    A DC 3 ? ? C5    A DC 3 ? ? 118.58 121.90 -3.32 0.40 N 
22 1 C5    A DC 3 ? ? C4    A DC 3 ? ? N4    A DC 3 ? ? 124.98 120.20 4.78  0.70 N 
23 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P     A DG 4 ? ? 128.90 119.70 9.20  1.20 Y 
24 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 98.68  104.50 -5.82 0.40 N 
25 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 109.35 103.10 6.25  0.90 N 
26 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 112.48 106.80 5.68  0.50 N 
27 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9    A DG 4 ? ? 102.84 108.00 -5.16 0.70 N 
28 1 C6    A DG 4 ? ? N1    A DG 4 ? ? C2    A DG 4 ? ? 119.53 125.10 -5.57 0.60 N 
29 1 C5    A DG 4 ? ? C6    A DG 4 ? ? N1    A DG 4 ? ? 117.13 111.50 5.63  0.50 N 
30 1 C4    A DG 4 ? ? C5    A DG 4 ? ? N7    A DG 4 ? ? 114.02 110.80 3.22  0.40 N 
31 1 C5    A DG 4 ? ? N7    A DG 4 ? ? C8    A DG 4 ? ? 100.99 104.30 -3.31 0.50 N 
32 1 C5    A DG 4 ? ? C6    A DG 4 ? ? O6    A DG 4 ? ? 124.03 128.60 -4.57 0.60 N 
33 1 "C3'" A DT 5 ? ? "C2'" A DT 5 ? ? "C1'" A DT 5 ? ? 96.62  102.40 -5.78 0.80 N 
34 1 C2    A DT 5 ? ? N3    A DT 5 ? ? C4    A DT 5 ? ? 123.39 127.20 -3.81 0.60 N 
35 1 N3    A DT 5 ? ? C4    A DT 5 ? ? C5    A DT 5 ? ? 118.85 115.20 3.65  0.60 N 
36 1 N3    A DT 5 ? ? C4    A DT 5 ? ? O4    A DT 5 ? ? 115.56 119.90 -4.34 0.60 N 
37 1 C2    A DG 6 ? ? N3    A DG 6 ? ? C4    A DG 6 ? ? 116.95 111.90 5.05  0.50 N 
38 1 N1    A DG 6 ? ? C6    A DG 6 ? ? O6    A DG 6 ? ? 124.20 119.90 4.30  0.60 N 
39 1 C5    A DG 6 ? ? C6    A DG 6 ? ? O6    A DG 6 ? ? 121.26 128.60 -7.34 0.60 N 
40 1 "O5'" B DC 1 ? ? "C5'" B DC 1 ? ? "C4'" B DC 1 ? ? 103.94 109.40 -5.46 0.80 N 
41 1 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? "C2'" B DC 1 ? ? 112.03 106.80 5.23  0.50 N 
42 1 C2    B DC 1 ? ? N3    B DC 1 ? ? C4    B DC 1 ? ? 124.75 119.90 4.85  0.50 N 
43 1 N3    B DC 1 ? ? C4    B DC 1 ? ? C5    B DC 1 ? ? 118.00 121.90 -3.90 0.40 N 
44 1 C5    B DC 1 ? ? C6    B DC 1 ? ? N1    B DC 1 ? ? 125.64 121.00 4.64  0.50 N 
45 1 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? "C2'" B DG 2 ? ? 109.81 106.80 3.01  0.50 N 
46 1 N3    B DG 2 ? ? C4    B DG 2 ? ? C5    B DG 2 ? ? 124.61 128.60 -3.99 0.50 N 
47 1 C5    B DG 2 ? ? C6    B DG 2 ? ? N1    B DG 2 ? ? 115.55 111.50 4.05  0.50 N 
48 1 N9    B DG 2 ? ? C4    B DG 2 ? ? C5    B DG 2 ? ? 109.98 105.40 4.58  0.40 N 
49 1 N3    B DC 3 ? ? C4    B DC 3 ? ? C5    B DC 3 ? ? 124.44 121.90 2.54  0.40 N 
50 1 N1    B DC 3 ? ? C2    B DC 3 ? ? O2    B DC 3 ? ? 123.94 118.90 5.04  0.60 N 
51 1 N3    B DC 3 ? ? C4    B DC 3 ? ? N4    B DC 3 ? ? 113.20 118.00 -4.80 0.70 N 
52 1 "C5'" B DG 4 ? ? "C4'" B DG 4 ? ? "O4'" B DG 4 ? ? 117.63 109.80 7.83  1.10 N 
53 1 N1    B DG 4 ? ? C2    B DG 4 ? ? N3    B DG 4 ? ? 119.38 123.90 -4.52 0.60 N 
54 1 C2    B DG 4 ? ? N3    B DG 4 ? ? C4    B DG 4 ? ? 119.21 111.90 7.31  0.50 N 
55 1 N3    B DG 4 ? ? C4    B DG 4 ? ? C5    B DG 4 ? ? 125.10 128.60 -3.50 0.50 N 
56 1 C4    B DG 4 ? ? C5    B DG 4 ? ? C6    B DG 4 ? ? 114.70 118.80 -4.10 0.60 N 
57 1 C5    B DG 4 ? ? C6    B DG 4 ? ? N1    B DG 4 ? ? 117.92 111.50 6.42  0.50 N 
58 1 N9    B DG 4 ? ? C4    B DG 4 ? ? C5    B DG 4 ? ? 102.94 105.40 -2.46 0.40 N 
59 1 N3    B DG 4 ? ? C4    B DG 4 ? ? N9    B DG 4 ? ? 131.96 126.00 5.96  0.60 N 
60 1 C5    B DG 4 ? ? C6    B DG 4 ? ? O6    B DG 4 ? ? 119.52 128.60 -9.08 0.60 N 
61 1 "O4'" B DT 5 ? ? "C4'" B DT 5 ? ? "C3'" B DT 5 ? ? 100.82 104.50 -3.68 0.40 N 
62 1 "C3'" B DT 5 ? ? "C2'" B DT 5 ? ? "C1'" B DT 5 ? ? 97.50  102.40 -4.90 0.80 N 
63 1 "O4'" B DG 6 ? ? "C1'" B DG 6 ? ? "C2'" B DG 6 ? ? 115.71 106.80 8.91  0.50 N 
64 1 C6    B DG 6 ? ? N1    B DG 6 ? ? C2    B DG 6 ? ? 130.43 125.10 5.33  0.60 N 
65 1 N1    B DG 6 ? ? C2    B DG 6 ? ? N3    B DG 6 ? ? 120.10 123.90 -3.80 0.60 N 
66 1 C4    B DG 6 ? ? C5    B DG 6 ? ? N7    B DG 6 ? ? 114.49 110.80 3.69  0.40 N 
67 1 C5    B DG 6 ? ? N7    B DG 6 ? ? C8    B DG 6 ? ? 100.94 104.30 -3.36 0.50 N 
68 1 N7    B DG 6 ? ? C8    B DG 6 ? ? N9    B DG 6 ? ? 118.18 113.10 5.08  0.50 N 
69 1 C8    B DG 6 ? ? N9    B DG 6 ? ? C4    B DG 6 ? ? 103.05 106.40 -3.35 0.40 N 
70 1 N1    B DG 6 ? ? C2    B DG 6 ? ? N2    B DG 6 ? ? 125.94 116.20 9.74  0.90 N 
71 1 N3    B DG 6 ? ? C2    B DG 6 ? ? N2    B DG 6 ? ? 113.78 119.90 -6.12 0.70 N 
72 1 N1    B DG 6 ? ? C6    B DG 6 ? ? O6    B DG 6 ? ? 124.81 119.90 4.91  0.60 N 
73 1 C5    B DG 6 ? ? C6    B DG 6 ? ? O6    B DG 6 ? ? 123.20 128.60 -5.40 0.60 N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DC OP3    O N N 1   
DC P      P N N 2   
DC OP1    O N N 3   
DC OP2    O N N 4   
DC "O5'"  O N N 5   
DC "C5'"  C N N 6   
DC "C4'"  C N R 7   
DC "O4'"  O N N 8   
DC "C3'"  C N S 9   
DC "O3'"  O N N 10  
DC "C2'"  C N N 11  
DC "C1'"  C N R 12  
DC N1     N N N 13  
DC C2     C N N 14  
DC O2     O N N 15  
DC N3     N N N 16  
DC C4     C N N 17  
DC N4     N N N 18  
DC C5     C N N 19  
DC C6     C N N 20  
DC HOP3   H N N 21  
DC HOP2   H N N 22  
DC "H5'"  H N N 23  
DC "H5''" H N N 24  
DC "H4'"  H N N 25  
DC "H3'"  H N N 26  
DC "HO3'" H N N 27  
DC "H2'"  H N N 28  
DC "H2''" H N N 29  
DC "H1'"  H N N 30  
DC H41    H N N 31  
DC H42    H N N 32  
DC H5     H N N 33  
DC H6     H N N 34  
DG OP3    O N N 35  
DG P      P N N 36  
DG OP1    O N N 37  
DG OP2    O N N 38  
DG "O5'"  O N N 39  
DG "C5'"  C N N 40  
DG "C4'"  C N R 41  
DG "O4'"  O N N 42  
DG "C3'"  C N S 43  
DG "O3'"  O N N 44  
DG "C2'"  C N N 45  
DG "C1'"  C N R 46  
DG N9     N Y N 47  
DG C8     C Y N 48  
DG N7     N Y N 49  
DG C5     C Y N 50  
DG C6     C N N 51  
DG O6     O N N 52  
DG N1     N N N 53  
DG C2     C N N 54  
DG N2     N N N 55  
DG N3     N N N 56  
DG C4     C Y N 57  
DG HOP3   H N N 58  
DG HOP2   H N N 59  
DG "H5'"  H N N 60  
DG "H5''" H N N 61  
DG "H4'"  H N N 62  
DG "H3'"  H N N 63  
DG "HO3'" H N N 64  
DG "H2'"  H N N 65  
DG "H2''" H N N 66  
DG "H1'"  H N N 67  
DG H8     H N N 68  
DG H1     H N N 69  
DG H21    H N N 70  
DG H22    H N N 71  
DT OP3    O N N 72  
DT P      P N N 73  
DT OP1    O N N 74  
DT OP2    O N N 75  
DT "O5'"  O N N 76  
DT "C5'"  C N N 77  
DT "C4'"  C N R 78  
DT "O4'"  O N N 79  
DT "C3'"  C N S 80  
DT "O3'"  O N N 81  
DT "C2'"  C N N 82  
DT "C1'"  C N R 83  
DT N1     N N N 84  
DT C2     C N N 85  
DT O2     O N N 86  
DT N3     N N N 87  
DT C4     C N N 88  
DT O4     O N N 89  
DT C5     C N N 90  
DT C7     C N N 91  
DT C6     C N N 92  
DT HOP3   H N N 93  
DT HOP2   H N N 94  
DT "H5'"  H N N 95  
DT "H5''" H N N 96  
DT "H4'"  H N N 97  
DT "H3'"  H N N 98  
DT "HO3'" H N N 99  
DT "H2'"  H N N 100 
DT "H2''" H N N 101 
DT "H1'"  H N N 102 
DT H3     H N N 103 
DT H71    H N N 104 
DT H72    H N N 105 
DT H73    H N N 106 
DT H6     H N N 107 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DC OP3   P      sing N N 1   
DC OP3   HOP3   sing N N 2   
DC P     OP1    doub N N 3   
DC P     OP2    sing N N 4   
DC P     "O5'"  sing N N 5   
DC OP2   HOP2   sing N N 6   
DC "O5'" "C5'"  sing N N 7   
DC "C5'" "C4'"  sing N N 8   
DC "C5'" "H5'"  sing N N 9   
DC "C5'" "H5''" sing N N 10  
DC "C4'" "O4'"  sing N N 11  
DC "C4'" "C3'"  sing N N 12  
DC "C4'" "H4'"  sing N N 13  
DC "O4'" "C1'"  sing N N 14  
DC "C3'" "O3'"  sing N N 15  
DC "C3'" "C2'"  sing N N 16  
DC "C3'" "H3'"  sing N N 17  
DC "O3'" "HO3'" sing N N 18  
DC "C2'" "C1'"  sing N N 19  
DC "C2'" "H2'"  sing N N 20  
DC "C2'" "H2''" sing N N 21  
DC "C1'" N1     sing N N 22  
DC "C1'" "H1'"  sing N N 23  
DC N1    C2     sing N N 24  
DC N1    C6     sing N N 25  
DC C2    O2     doub N N 26  
DC C2    N3     sing N N 27  
DC N3    C4     doub N N 28  
DC C4    N4     sing N N 29  
DC C4    C5     sing N N 30  
DC N4    H41    sing N N 31  
DC N4    H42    sing N N 32  
DC C5    C6     doub N N 33  
DC C5    H5     sing N N 34  
DC C6    H6     sing N N 35  
DG OP3   P      sing N N 36  
DG OP3   HOP3   sing N N 37  
DG P     OP1    doub N N 38  
DG P     OP2    sing N N 39  
DG P     "O5'"  sing N N 40  
DG OP2   HOP2   sing N N 41  
DG "O5'" "C5'"  sing N N 42  
DG "C5'" "C4'"  sing N N 43  
DG "C5'" "H5'"  sing N N 44  
DG "C5'" "H5''" sing N N 45  
DG "C4'" "O4'"  sing N N 46  
DG "C4'" "C3'"  sing N N 47  
DG "C4'" "H4'"  sing N N 48  
DG "O4'" "C1'"  sing N N 49  
DG "C3'" "O3'"  sing N N 50  
DG "C3'" "C2'"  sing N N 51  
DG "C3'" "H3'"  sing N N 52  
DG "O3'" "HO3'" sing N N 53  
DG "C2'" "C1'"  sing N N 54  
DG "C2'" "H2'"  sing N N 55  
DG "C2'" "H2''" sing N N 56  
DG "C1'" N9     sing N N 57  
DG "C1'" "H1'"  sing N N 58  
DG N9    C8     sing Y N 59  
DG N9    C4     sing Y N 60  
DG C8    N7     doub Y N 61  
DG C8    H8     sing N N 62  
DG N7    C5     sing Y N 63  
DG C5    C6     sing N N 64  
DG C5    C4     doub Y N 65  
DG C6    O6     doub N N 66  
DG C6    N1     sing N N 67  
DG N1    C2     sing N N 68  
DG N1    H1     sing N N 69  
DG C2    N2     sing N N 70  
DG C2    N3     doub N N 71  
DG N2    H21    sing N N 72  
DG N2    H22    sing N N 73  
DG N3    C4     sing N N 74  
DT OP3   P      sing N N 75  
DT OP3   HOP3   sing N N 76  
DT P     OP1    doub N N 77  
DT P     OP2    sing N N 78  
DT P     "O5'"  sing N N 79  
DT OP2   HOP2   sing N N 80  
DT "O5'" "C5'"  sing N N 81  
DT "C5'" "C4'"  sing N N 82  
DT "C5'" "H5'"  sing N N 83  
DT "C5'" "H5''" sing N N 84  
DT "C4'" "O4'"  sing N N 85  
DT "C4'" "C3'"  sing N N 86  
DT "C4'" "H4'"  sing N N 87  
DT "O4'" "C1'"  sing N N 88  
DT "C3'" "O3'"  sing N N 89  
DT "C3'" "C2'"  sing N N 90  
DT "C3'" "H3'"  sing N N 91  
DT "O3'" "HO3'" sing N N 92  
DT "C2'" "C1'"  sing N N 93  
DT "C2'" "H2'"  sing N N 94  
DT "C2'" "H2''" sing N N 95  
DT "C1'" N1     sing N N 96  
DT "C1'" "H1'"  sing N N 97  
DT N1    C2     sing N N 98  
DT N1    C6     sing N N 99  
DT C2    O2     doub N N 100 
DT C2    N3     sing N N 101 
DT N3    C4     sing N N 102 
DT N3    H3     sing N N 103 
DT C4    O4     doub N N 104 
DT C4    C5     sing N N 105 
DT C5    C7     sing N N 106 
DT C5    C6     doub N N 107 
DT C7    H71    sing N N 108 
DT C7    H72    sing N N 109 
DT C7    H73    sing N N 110 
DT C6    H6     sing N N 111 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
1VTT 'z-form double helix'  
1VTT 'mismatched base pair' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1 1_555 B DG 6 1_555 -0.263 -0.201 0.087  6.163  1.418  0.730 1 A_DC1:DG6_B A 1 ? B 6 ? 19 1 
1 A DG 2 1_555 B DT 5 1_555 2.242  -0.527 0.119  -6.685 2.999  5.804 2 A_DG2:DT5_B A 2 ? B 5 ? 28 1 
1 A DC 3 1_555 B DG 4 1_555 -0.294 -0.087 0.025  2.832  -1.499 1.747 3 A_DC3:DG4_B A 3 ? B 4 ? 19 1 
1 A DG 4 1_555 B DC 3 1_555 0.216  -0.043 -0.010 -7.027 1.655  1.838 4 A_DG4:DC3_B A 4 ? B 3 ? 19 1 
1 A DT 5 1_555 B DG 2 1_555 -2.297 -0.527 0.099  3.922  7.336  2.907 5 A_DT5:DG2_B A 5 ? B 2 ? 28 1 
1 A DG 6 1_555 B DC 1 1_555 0.257  -0.114 0.195  -6.762 -4.053 0.969 6 A_DG6:DC1_B A 6 ? B 1 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DT 5 1_555 0.079  5.060  3.782 2.296  0.423  -0.057  -136.650 69.767  -0.901 -16.044 
87.135 -2.335  1 AA_DC1DG2:DT5DG6_BB A 1 ? B 6 ? A 2 ? B 5 ? 
1 A DG 2 1_555 B DT 5 1_555 A DC 3 1_555 B DG 4 1_555 0.017  -0.410 3.269 -1.924 -8.875 -57.177 0.895    -0.084  3.178  9.209   
-1.996 -57.833 2 AA_DG2DC3:DG4DT5_BB A 2 ? B 5 ? A 3 ? B 4 ? 
1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.036 5.400  3.758 0.823  -4.538 -8.185  -17.801  2.528   5.884  28.963  
5.249  -9.393  3 AA_DC3DG4:DC3DG4_BB A 3 ? B 4 ? A 4 ? B 3 ? 
1 A DG 4 1_555 B DC 3 1_555 A DT 5 1_555 B DG 2 1_555 -0.039 -0.291 3.252 2.140  -5.600 -59.315 0.571    0.067   3.215  5.643   
2.157  -59.590 4 AA_DG4DT5:DG2DC3_BB A 4 ? B 3 ? A 5 ? B 2 ? 
1 A DT 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 -0.103 5.038  3.785 -5.999 -0.625 0.127   51.197   -30.905 -0.339 -9.196  
88.322 6.032   5 AA_DT5DG6:DC1DG2_BB A 5 ? B 2 ? A 6 ? B 1 ? 
# 
_atom_sites.entry_id                    1VTT 
_atom_sites.fract_transf_matrix[1][1]   0.057307 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.031616 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.021949 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_