HEADER COMPLEMENT INHIBITOR 25-JUN-97 1VVD TITLE C-TERMINAL HALF OF VACCINIA VIRUS COMPLEMENT CONTROL PROTEIN, NMR, 21 TITLE 2 STRUCTURES SPLIT 1VVD 1VVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACCINIA VIRUS COMPLEMENT CONTROL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MODULES 3 AND 4; COMPND 5 SYNONYM: SP35, VCP, VACCINIA VIRUS SP35; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 3 ORGANISM_TAXID: 10245; SOURCE 4 GENE: C21L; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: GS115; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: HIS4; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPIC9 KEYWDS COMPLEMENT INHIBITOR, COMPLEMENT MODULE, SCR, SUSHI DOMAIN, MODULE KEYWDS 2 PAIR EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR A.WILES,I.D.CAMPBELL,P.N.BARLOW REVDAT 3 24-NOV-10 1VVD 1 REMARK REVDAT 2 24-FEB-09 1VVD 1 VERSN REVDAT 1 03-DEC-97 1VVD 0 JRNL AUTH A.P.WILES,G.SHAW,J.BRIGHT,A.PERCZEL,I.D.CAMPBELL,P.N.BARLOW JRNL TITL NMR STUDIES OF A VIRAL PROTEIN THAT MIMICS THE REGULATORS OF JRNL TITL 2 COMPLEMENT ACTIVATION. JRNL REF J.MOL.BIOL. V. 272 253 1997 JRNL REFN ISSN 0022-2836 JRNL PMID 9299352 JRNL DOI 10.1006/JMBI.1997.1241 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.84 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION. REMARK 4 REMARK 4 1VVD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N; 1H-NOESY HSQC; 1H-TOCSY REMARK 210 HSQC; DQF-COSY; HOHAHA REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : HOME BUILT REMARK 210 SPECTROMETER MANUFACTURER : HOME BUILT/GE REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SIMULATE ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : < 2 NOE VIOLATIONS > 0.5 A; NO REMARK 210 DIHEDRAL ANGLE VIOLATIONS > 5 REMARK 210 DEGREES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER A 96 O LYS A 115 1.48 REMARK 500 O LYS A 94 H VAL A 117 1.49 REMARK 500 O ARG A 13 H SER A 30 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 4 172.27 -54.84 REMARK 500 1 SER A 10 95.66 -37.87 REMARK 500 1 ASN A 11 27.24 42.33 REMARK 500 1 ASN A 15 80.04 -154.11 REMARK 500 1 TYR A 17 27.02 -141.97 REMARK 500 1 PHE A 20 49.31 -151.05 REMARK 500 1 THR A 22 -70.25 -131.78 REMARK 500 1 ASN A 32 150.95 -44.27 REMARK 500 1 SER A 33 99.43 -55.35 REMARK 500 1 ASN A 40 49.34 -98.31 REMARK 500 1 SER A 41 57.29 27.89 REMARK 500 1 VAL A 43 -178.96 -62.71 REMARK 500 1 ASP A 52 67.65 37.29 REMARK 500 1 PRO A 62 -89.77 -70.47 REMARK 500 1 ILE A 66 167.04 177.88 REMARK 500 1 SER A 67 73.15 -64.19 REMARK 500 1 ASN A 68 -16.72 75.20 REMARK 500 1 TYR A 70 -173.49 -43.15 REMARK 500 1 SER A 72 22.07 -146.97 REMARK 500 1 SER A 80 137.85 -170.43 REMARK 500 1 TYR A 81 105.44 25.49 REMARK 500 1 ASN A 82 -134.86 96.40 REMARK 500 1 TYR A 91 -174.50 62.44 REMARK 500 1 CYS A 103 86.15 -65.07 REMARK 500 1 ASN A 107 66.99 65.22 REMARK 500 1 GLU A 112 131.05 -36.93 REMARK 500 1 LEU A 113 154.50 -43.93 REMARK 500 2 CYS A 3 88.22 -69.72 REMARK 500 2 SER A 5 127.39 -38.30 REMARK 500 2 SER A 10 95.26 -40.78 REMARK 500 2 TYR A 17 46.16 -105.91 REMARK 500 2 GLU A 18 -159.70 -175.82 REMARK 500 2 TYR A 21 44.90 -102.40 REMARK 500 2 THR A 22 99.80 -53.98 REMARK 500 2 ASP A 23 165.28 50.15 REMARK 500 2 SER A 41 54.84 25.46 REMARK 500 2 VAL A 43 -177.99 -64.65 REMARK 500 2 GLN A 57 -141.23 -120.32 REMARK 500 2 LYS A 60 -179.17 -55.99 REMARK 500 2 PRO A 62 -71.85 -83.66 REMARK 500 2 HIS A 63 129.46 162.02 REMARK 500 2 TYR A 70 -172.59 -178.54 REMARK 500 2 SER A 73 -80.49 -58.93 REMARK 500 2 SER A 80 -104.45 -146.59 REMARK 500 2 ASN A 82 -99.43 61.32 REMARK 500 2 ASP A 83 79.48 41.14 REMARK 500 2 LYS A 90 -92.13 -44.37 REMARK 500 2 LEU A 95 103.00 -57.12 REMARK 500 2 CYS A 103 81.50 -66.09 REMARK 500 2 ASN A 107 93.61 81.00 REMARK 500 REMARK 500 THIS ENTRY HAS 566 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 13 0.18 SIDE CHAIN REMARK 500 1 ARG A 77 0.32 SIDE CHAIN REMARK 500 1 ARG A 118 0.28 SIDE CHAIN REMARK 500 2 ARG A 13 0.11 SIDE CHAIN REMARK 500 2 ARG A 77 0.20 SIDE CHAIN REMARK 500 2 ARG A 118 0.21 SIDE CHAIN REMARK 500 3 ARG A 77 0.32 SIDE CHAIN REMARK 500 3 ARG A 118 0.31 SIDE CHAIN REMARK 500 4 ARG A 13 0.25 SIDE CHAIN REMARK 500 4 ARG A 77 0.30 SIDE CHAIN REMARK 500 4 ARG A 118 0.19 SIDE CHAIN REMARK 500 5 ARG A 13 0.25 SIDE CHAIN REMARK 500 5 ARG A 77 0.21 SIDE CHAIN REMARK 500 5 ARG A 118 0.26 SIDE CHAIN REMARK 500 6 ARG A 13 0.31 SIDE CHAIN REMARK 500 6 ARG A 77 0.31 SIDE CHAIN REMARK 500 6 ARG A 118 0.22 SIDE CHAIN REMARK 500 7 ARG A 13 0.31 SIDE CHAIN REMARK 500 7 ARG A 77 0.12 SIDE CHAIN REMARK 500 7 ARG A 118 0.20 SIDE CHAIN REMARK 500 8 ARG A 13 0.31 SIDE CHAIN REMARK 500 8 ARG A 77 0.32 SIDE CHAIN REMARK 500 8 ARG A 118 0.23 SIDE CHAIN REMARK 500 9 ARG A 13 0.26 SIDE CHAIN REMARK 500 9 ARG A 77 0.11 SIDE CHAIN REMARK 500 9 ARG A 118 0.20 SIDE CHAIN REMARK 500 10 ARG A 13 0.27 SIDE CHAIN REMARK 500 10 ARG A 77 0.32 SIDE CHAIN REMARK 500 10 ARG A 118 0.29 SIDE CHAIN REMARK 500 11 ARG A 13 0.32 SIDE CHAIN REMARK 500 11 ARG A 77 0.31 SIDE CHAIN REMARK 500 11 ARG A 118 0.22 SIDE CHAIN REMARK 500 12 ARG A 13 0.30 SIDE CHAIN REMARK 500 12 ARG A 77 0.29 SIDE CHAIN REMARK 500 12 ARG A 118 0.12 SIDE CHAIN REMARK 500 13 ARG A 13 0.19 SIDE CHAIN REMARK 500 13 ARG A 77 0.28 SIDE CHAIN REMARK 500 13 ARG A 118 0.19 SIDE CHAIN REMARK 500 14 ARG A 13 0.15 SIDE CHAIN REMARK 500 14 ARG A 77 0.22 SIDE CHAIN REMARK 500 14 ARG A 118 0.28 SIDE CHAIN REMARK 500 15 ARG A 13 0.20 SIDE CHAIN REMARK 500 15 ARG A 77 0.23 SIDE CHAIN REMARK 500 15 ARG A 118 0.13 SIDE CHAIN REMARK 500 16 ARG A 13 0.10 SIDE CHAIN REMARK 500 16 ARG A 77 0.28 SIDE CHAIN REMARK 500 16 ARG A 118 0.26 SIDE CHAIN REMARK 500 17 ARG A 13 0.32 SIDE CHAIN REMARK 500 17 ARG A 77 0.31 SIDE CHAIN REMARK 500 17 ARG A 118 0.29 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 62 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VVC RELATED DB: PDB REMARK 900 RELATED ID: 1VVE RELATED DB: PDB DBREF 1VVD A 1 118 UNP P68638 VCP_VACCV 146 263 SEQRES 1 A 118 VAL LYS CYS GLN SER PRO PRO SER ILE SER ASN GLY ARG SEQRES 2 A 118 HIS ASN GLY TYR GLU ASP PHE TYR THR ASP GLY SER VAL SEQRES 3 A 118 VAL THR TYR SER CYS ASN SER GLY TYR SER LEU ILE GLY SEQRES 4 A 118 ASN SER GLY VAL LEU CYS SER GLY GLY GLU TRP SER ASP SEQRES 5 A 118 PRO PRO THR CYS GLN ILE VAL LYS CYS PRO HIS PRO THR SEQRES 6 A 118 ILE SER ASN GLY TYR LEU SER SER GLY PHE LYS ARG SER SEQRES 7 A 118 TYR SER TYR ASN ASP ASN VAL ASP PHE LYS CYS LYS TYR SEQRES 8 A 118 GLY TYR LYS LEU SER GLY SER SER SER SER THR CYS SER SEQRES 9 A 118 PRO GLY ASN THR TRP LYS PRO GLU LEU PRO LYS CYS VAL SEQRES 10 A 118 ARG SHEET 1 A 2 GLY A 12 HIS A 14 0 SHEET 2 A 2 TYR A 29 CYS A 31 -1 N SER A 30 O ARG A 13 SHEET 1 B 2 SER A 36 ILE A 38 0 SHEET 2 B 2 THR A 55 GLN A 57 -1 N GLN A 57 O SER A 36 SHEET 1 C 3 THR A 108 LYS A 110 0 SHEET 2 C 3 SER A 100 SER A 104 -1 N SER A 104 O THR A 108 SHEET 3 C 3 ASN A 82 ASP A 86 -1 N VAL A 85 O SER A 101 SSBOND 1 CYS A 3 CYS A 45 1555 1555 2.02 SSBOND 2 CYS A 31 CYS A 56 1555 1555 2.02 SSBOND 3 CYS A 61 CYS A 103 1555 1555 2.02 SSBOND 4 CYS A 89 CYS A 116 1555 1555 2.03 CISPEP 1 LYS A 110 PRO A 111 1 -0.44 CISPEP 2 LYS A 110 PRO A 111 2 0.12 CISPEP 3 LYS A 110 PRO A 111 3 -0.61 CISPEP 4 LYS A 110 PRO A 111 4 -0.04 CISPEP 5 LYS A 110 PRO A 111 5 0.57 CISPEP 6 LYS A 110 PRO A 111 6 -0.59 CISPEP 7 LYS A 110 PRO A 111 7 -0.10 CISPEP 8 LYS A 110 PRO A 111 8 -0.10 CISPEP 9 LYS A 110 PRO A 111 9 -0.37 CISPEP 10 LYS A 110 PRO A 111 10 -0.14 CISPEP 11 LYS A 110 PRO A 111 11 -0.51 CISPEP 12 LYS A 110 PRO A 111 12 -0.45 CISPEP 13 LYS A 110 PRO A 111 13 -0.16 CISPEP 14 LYS A 110 PRO A 111 14 -0.16 CISPEP 15 LYS A 110 PRO A 111 15 -0.28 CISPEP 16 LYS A 110 PRO A 111 16 -0.27 CISPEP 17 LYS A 110 PRO A 111 17 -0.07 CISPEP 18 LYS A 110 PRO A 111 18 -0.08 CISPEP 19 LYS A 110 PRO A 111 19 -0.28 CISPEP 20 LYS A 110 PRO A 111 20 -0.22 CISPEP 21 LYS A 110 PRO A 111 21 -0.36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1