data_1VWI # _entry.id 1VWI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1VWI WWPDB D_1000177134 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VWI _pdbx_database_status.recvd_initial_deposition_date 1997-03-03 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Katz, B.A.' 1 'Cass, R.T.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0. ; J.Biol.Chem. 272 13220 13228 1997 JBCHA3 US 0021-9258 0071 ? 9148939 10.1074/jbc.272.20.13220 1 ;Structure-Based Design Tools: Structural and Thermodynamic Comparison with Biotin of a Small Molecule that Binds Streptavidin with Micromolar Affinity ; J.Am.Chem.Soc. 118 7914 ? 1996 JACSAT US 0002-7863 0004 ? ? ? 2 'Preparation of a Protein-Dimerizing Ligand by Topochemistry and Structure-Based Design' J.Am.Chem.Soc. 118 2535 ? 1996 JACSAT US 0002-7863 0004 ? ? ? 3 'Topochemical Catalysis Achieved by Structure-Based Ligand Design' J.Biol.Chem. 270 31210 ? 1995 JBCHA3 US 0021-9258 0071 ? ? ? 4 'Topochemistry for Preparing Ligands that Dimerize Receptors' Chem.Biol. 2 591 ? 1995 CBOLE2 UK 1074-5521 2050 ? ? ? 5 ;Binding to Protein Targets of Peptidic Leads Discovered by Phage Display: Crystal Structures of Streptavidin-Bound Linear and Cyclic Peptide Ligands Containing the Hpq Sequence ; Biochemistry 34 15421 ? 1995 BICHAW US 0006-2960 0033 ? ? ? 6 'Structure-Based Design of High Affinity Streptavidin Binding Cyclic Peptide Ligands Containing Thioether Cross-Links' J.Am.Chem.Soc. 117 8541 ? 1995 JACSAT US 0002-7863 0004 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Katz, B.A.' 1 primary 'Cass, R.T.' 2 1 'Katz, B.A.' 3 1 'Liu, B.' 4 1 'Cass, R.T.' 5 2 'Katz, B.A.' 6 3 'Katz, B.A.' 7 3 'Cass, R.T.' 8 3 'Liu, B.' 9 3 'Arze, R.' 10 3 'Collins, N.' 11 4 'Katz, B.A.' 12 4 'Stroud, R.M.' 13 4 'Collins, N.' 14 4 'Liu, B.' 15 4 'Arze, R.' 16 5 'Katz, B.A.' 17 6 'Katz, B.A.' 18 6 'Johnson, C.R.' 19 6 'Cass, R.T.' 20 # _cell.entry_id 1VWI _cell.length_a 94.840 _cell.length_b 105.570 _cell.length_c 47.980 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VWI _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat STREPTAVIDIN 12965.025 2 ? ? ? ? 2 polymer man 'PEPTIDE LIGAND CONTAINING HPQ' 863.017 2 ? ? ? ? 3 non-polymer syn 'PENTANOIC ACID' 102.132 2 ? ? ? ? 4 water nat water 18.015 146 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;AEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTW SGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKP ; ;AEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTW SGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKP ; B,D ? 2 'polypeptide(L)' no yes 'HPQGPPCK(NH2)' HPQGPPCKX M,P ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLU n 1 3 ALA n 1 4 GLY n 1 5 ILE n 1 6 THR n 1 7 GLY n 1 8 THR n 1 9 TRP n 1 10 TYR n 1 11 ASN n 1 12 GLN n 1 13 LEU n 1 14 GLY n 1 15 SER n 1 16 THR n 1 17 PHE n 1 18 ILE n 1 19 VAL n 1 20 THR n 1 21 ALA n 1 22 GLY n 1 23 ALA n 1 24 ASP n 1 25 GLY n 1 26 ALA n 1 27 LEU n 1 28 THR n 1 29 GLY n 1 30 THR n 1 31 TYR n 1 32 GLU n 1 33 SER n 1 34 ALA n 1 35 VAL n 1 36 GLY n 1 37 ASN n 1 38 ALA n 1 39 GLU n 1 40 SER n 1 41 ARG n 1 42 TYR n 1 43 VAL n 1 44 LEU n 1 45 THR n 1 46 GLY n 1 47 ARG n 1 48 TYR n 1 49 ASP n 1 50 SER n 1 51 ALA n 1 52 PRO n 1 53 ALA n 1 54 THR n 1 55 ASP n 1 56 GLY n 1 57 SER n 1 58 GLY n 1 59 THR n 1 60 ALA n 1 61 LEU n 1 62 GLY n 1 63 TRP n 1 64 THR n 1 65 VAL n 1 66 ALA n 1 67 TRP n 1 68 LYS n 1 69 ASN n 1 70 ASN n 1 71 TYR n 1 72 ARG n 1 73 ASN n 1 74 ALA n 1 75 HIS n 1 76 SER n 1 77 ALA n 1 78 THR n 1 79 THR n 1 80 TRP n 1 81 SER n 1 82 GLY n 1 83 GLN n 1 84 TYR n 1 85 VAL n 1 86 GLY n 1 87 GLY n 1 88 ALA n 1 89 GLU n 1 90 ALA n 1 91 ARG n 1 92 ILE n 1 93 ASN n 1 94 THR n 1 95 GLN n 1 96 TRP n 1 97 LEU n 1 98 LEU n 1 99 THR n 1 100 SER n 1 101 GLY n 1 102 THR n 1 103 THR n 1 104 GLU n 1 105 ALA n 1 106 ASN n 1 107 ALA n 1 108 TRP n 1 109 LYS n 1 110 SER n 1 111 THR n 1 112 LEU n 1 113 VAL n 1 114 GLY n 1 115 HIS n 1 116 ASP n 1 117 THR n 1 118 PHE n 1 119 THR n 1 120 LYS n 1 121 VAL n 1 122 LYS n 1 123 PRO n 2 1 HIS n 2 2 PRO n 2 3 GLN n 2 4 GLY n 2 5 PRO n 2 6 PRO n 2 7 CYS n 2 8 LYS n 2 9 NH2 n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Streptomyces avidinii' _entity_src_nat.pdbx_ncbi_taxonomy_id 1895 _entity_src_nat.genus Streptomyces _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP SAV_STRAV 1 P22629 1 ;MRKIVVAAIAVSLTTVSITASASADPSKDSKAQVSAAEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVL TGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPS AASIDAAKKAGVNNGNPLDAVQQ ; ? 2 PDB 1VWI 2 1VWI ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VWI B 1 ? 123 ? P22629 37 ? 159 ? 13 135 2 1 1VWI D 1 ? 123 ? P22629 37 ? 159 ? 13 135 3 2 1VWI M 1 ? 9 ? 1VWI 3 ? 10 ? 3 10 4 2 1VWI P 1 ? 9 ? 1VWI 3 ? 10 ? 3 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEA non-polymer . 'PENTANOIC ACID' 'VALERIC ACID' 'C5 H10 O2' 102.132 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1VWI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_percent_sol 18.7 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 1.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'SYNTHETIC MOTHER LIQUOR = 75 % SATURATED AMMONIUM SULFATE, 25 % 1.0 M SODIUM FORMATE ADJUSTED TO PH 1.5.' # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1VWI _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high ? _reflns.number_obs 41504 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.0560000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.2 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1VWI _refine.ls_number_reflns_obs 25381 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.8 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.5 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 65.7 _refine.ls_R_factor_obs 0.2020000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2020000 _refine.ls_R_factor_R_free 0.2350000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10. _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;THE FOLLOWING ATOMS HAD WEAK DENSITY AND OCCUPANCIES WERE REFINED: B 13, B 14, B 15, B 22, B 46, B 47, B 48, B 49, B 50, (TERMINUS OF ARG B 53), (TERMINUS OF ARG B 59), B 62, B 63, B 64, B 65, B 66, B 67, B 68, (TERMINUS OF ARG B 84), (SIDE CHAIN OF GLU B 101), TERMINUS OF ARG B 103, (CB, HB1, HB2 OF GLU B 116), (CG, HG1, HG2, CD, OE1, OE2 OF GLU B 116), B 135, D 13, D 14, D 15, D 46, D 47, D 48, D 49, D 50, (TERMINUS OF ARG D 53), (TERMINUS OF ARG D 59), D 62, D 63, D 64, D 65, D 66, D 67, D 68, (TERMINUS OF ARG D 84), (TERMINUS OF ARG D 103), (M 9 AND M 10), (P 9 AND P 10). B 22 IS DISORDERED BETWEEN 2 CONFORMATIONS ONE OF WHICH OCCUPIES A SIMILAR REGION OF SPACE AS A TWO-FOLD RELATED B 22. PROPER REFINEMENT WITH X-PLOR IS NOT POSSIBLE BECAUSE OF THE OVERLAP OF ONE CONFORMER WITH THE SYMMETRY-RELATED COUNTERPART. THE FOLLOWING WATERS WERE USED TO ACCOUNT FOR DENSITY DUE TO THIS CONFORMER OF TYR B 22: HOH 519, HOH 1239. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1939 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 146 _refine_hist.number_atoms_total 2097 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 7.5 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 4.3 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.9 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.57 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs 34.3 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 I2VAL15_PARMALLH3X.PRO I2VAL15_TOPALLH6X_BAK.PRO 'X-RAY DIFFRACTION' 2 PARAM11_UCSF.WAT TOPH19.PEP 'X-RAY DIFFRACTION' 3 PARAM19XB2_KBCO.PRO TOPH19XB2_KBCO.PRO 'X-RAY DIFFRACTION' # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.999970 _struct_ncs_oper.matrix[1][2] -0.005000 _struct_ncs_oper.matrix[1][3] 0.005996 _struct_ncs_oper.matrix[2][1] 0.000427 _struct_ncs_oper.matrix[2][2] 0.731744 _struct_ncs_oper.matrix[2][3] 0.681579 _struct_ncs_oper.matrix[3][1] -0.007796 _struct_ncs_oper.matrix[3][2] 0.681561 _struct_ncs_oper.matrix[3][3] -0.731720 _struct_ncs_oper.vector[1] 51.52760 _struct_ncs_oper.vector[2] 0.02660 _struct_ncs_oper.vector[3] 0.39270 # _struct.entry_id 1VWI _struct.title 'STREPTAVIDIN-CYCLO-[5-S-VALERAMIDE-HPQGPPC]K-NH2, PH 1.5, I222 COMPLEX' _struct.pdbx_descriptor 'STREPTAVIDIN, PEPTIDE LIGAND CONTAINING HPQ, LEVULINIC ACID' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VWI _struct_keywords.pdbx_keywords 'COMPLEX (BIOTIN-BINDING PROTEIN/PEPTIDE)' _struct_keywords.text ;COMPLEX (BIOTIN-BINDING PROTEIN-PEPTIDE), LINEAR THIOETHER-CONTAINING PEPTIDE ENGINEERED, COMPLEX (BIOTIN-BINDING PROTEIN-PEPTIDE) complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 2 ? ILE A 5 ? GLU B 14 ILE B 17 1 ? 4 HELX_P HELX_P2 2 GLU A 104 ? LYS A 109 ? GLU B 116 LYS B 121 5 ? 6 HELX_P HELX_P3 3 GLU B 2 ? GLY B 4 ? GLU D 14 GLY D 16 5 ? 3 HELX_P HELX_P4 4 GLU B 104 ? LYS B 109 ? GLU D 116 LYS D 121 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? E LEA . C2 ? ? ? 1_555 C HIS 1 N ? ? M LEA 2 M HIS 3 1_555 ? ? ? ? ? ? ? 1.311 ? covale2 covale ? ? E LEA . C6 ? ? ? 1_555 C CYS 7 SG ? ? M LEA 2 M CYS 1 1_555 ? ? ? ? ? ? ? 1.815 ? covale3 covale ? ? C NH2 9 N ? ? ? 1_555 C LYS 8 C ? ? M NH2 10 M LYS 9 1_555 ? ? ? ? ? ? ? 1.296 ? covale4 covale ? ? F LEA . C2 ? ? ? 1_555 D HIS 1 N ? ? P LEA 2 P HIS 3 1_555 ? ? ? ? ? ? ? 1.306 ? covale5 covale ? ? F LEA . C6 ? ? ? 1_555 D CYS 7 SG ? ? P LEA 2 P CYS 1 1_555 ? ? ? ? ? ? ? 1.810 ? covale6 covale ? ? D NH2 9 N ? ? ? 1_555 D LYS 8 C ? ? P NH2 10 P LYS 9 1_555 ? ? ? ? ? ? ? 1.289 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 9 ? B ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 7 ? TYR A 10 ? GLY B 19 TYR B 22 A 2 THR A 16 ? ALA A 21 ? THR B 28 ALA B 33 A 3 ALA A 26 ? GLU A 32 ? ALA B 38 GLU B 44 A 4 ARG A 41 ? TYR A 48 ? ARG B 53 TYR B 60 A 5 THR A 59 ? ALA A 66 ? THR B 71 ALA B 78 A 6 SER A 76 ? VAL A 85 ? SER B 88 VAL B 97 A 7 ARG A 91 ? SER A 100 ? ARG B 103 SER B 112 A 8 THR A 111 ? LYS A 122 ? THR B 123 LYS B 134 A 9 THR A 8 ? ASN A 11 ? THR B 20 ASN B 23 B 1 GLY B 7 ? TYR B 10 ? GLY D 19 TYR D 22 B 2 THR B 16 ? ALA B 21 ? THR D 28 ALA D 33 B 3 ALA B 26 ? GLU B 32 ? ALA D 38 GLU D 44 B 4 ARG B 41 ? TYR B 48 ? ARG D 53 TYR D 60 B 5 THR B 59 ? ALA B 66 ? THR D 71 ALA D 78 B 6 SER B 76 ? VAL B 85 ? SER D 88 VAL D 97 B 7 ARG B 91 ? SER B 100 ? ARG D 103 SER D 112 B 8 THR B 111 ? THR B 119 ? THR D 123 THR D 131 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 7 ? O GLY B 19 N VAL A 19 ? N VAL B 31 A 2 3 O THR A 16 ? O THR B 28 N GLU A 32 ? N GLU B 44 A 3 4 O LEU A 27 ? O LEU B 39 N GLY A 46 ? N GLY B 58 A 4 5 O THR A 45 ? O THR B 57 N THR A 64 ? N THR B 76 A 5 6 O THR A 59 ? O THR B 71 N TYR A 84 ? N TYR B 96 A 6 7 O ALA A 77 ? O ALA B 89 N THR A 99 ? N THR B 111 A 7 8 O ILE A 92 ? O ILE B 104 N PHE A 118 ? N PHE B 130 A 8 9 O THR A 119 ? O THR B 131 N TYR A 10 ? N TYR B 22 B 1 2 O GLY B 7 ? O GLY D 19 N VAL B 19 ? N VAL D 31 B 2 3 O THR B 16 ? O THR D 28 N GLU B 32 ? N GLU D 44 B 3 4 O LEU B 27 ? O LEU D 39 N GLY B 46 ? N GLY D 58 B 4 5 O THR B 45 ? O THR D 57 N THR B 64 ? N THR D 76 B 5 6 O THR B 59 ? O THR D 71 N TYR B 84 ? N TYR D 96 B 6 7 O ALA B 77 ? O ALA D 89 N THR B 99 ? N THR D 111 B 7 8 O ILE B 92 ? O ILE D 104 N PHE B 118 ? N PHE D 130 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE LEA M 2' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE LEA P 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CYS C 7 ? CYS M 1 . ? 1_555 ? 2 AC1 5 HIS C 1 ? HIS M 3 . ? 1_555 ? 3 AC1 5 PRO C 2 ? PRO M 4 . ? 1_555 ? 4 AC1 5 HOH I . ? HOH M 1028 . ? 1_555 ? 5 AC1 5 HOH I . ? HOH M 1140 . ? 1_555 ? 6 AC2 3 CYS D 7 ? CYS P 1 . ? 1_555 ? 7 AC2 3 HIS D 1 ? HIS P 3 . ? 1_555 ? 8 AC2 3 PRO D 2 ? PRO P 4 . ? 1_555 ? # _database_PDB_matrix.entry_id 1VWI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1VWI _atom_sites.fract_transf_matrix[1][1] 0.010544 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009472 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020842 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 13 13 ALA ALA B . n A 1 2 GLU 2 14 14 GLU GLU B . n A 1 3 ALA 3 15 15 ALA ALA B . n A 1 4 GLY 4 16 16 GLY GLY B . n A 1 5 ILE 5 17 17 ILE ILE B . n A 1 6 THR 6 18 18 THR THR B . n A 1 7 GLY 7 19 19 GLY GLY B . n A 1 8 THR 8 20 20 THR THR B . n A 1 9 TRP 9 21 21 TRP TRP B . n A 1 10 TYR 10 22 22 TYR TYR B . n A 1 11 ASN 11 23 23 ASN ASN B . n A 1 12 GLN 12 24 24 GLN GLN B . n A 1 13 LEU 13 25 25 LEU LEU B . n A 1 14 GLY 14 26 26 GLY GLY B . n A 1 15 SER 15 27 27 SER SER B . n A 1 16 THR 16 28 28 THR THR B . n A 1 17 PHE 17 29 29 PHE PHE B . n A 1 18 ILE 18 30 30 ILE ILE B . n A 1 19 VAL 19 31 31 VAL VAL B . n A 1 20 THR 20 32 32 THR THR B . n A 1 21 ALA 21 33 33 ALA ALA B . n A 1 22 GLY 22 34 34 GLY GLY B . n A 1 23 ALA 23 35 35 ALA ALA B . n A 1 24 ASP 24 36 36 ASP ASP B . n A 1 25 GLY 25 37 37 GLY GLY B . n A 1 26 ALA 26 38 38 ALA ALA B . n A 1 27 LEU 27 39 39 LEU LEU B . n A 1 28 THR 28 40 40 THR THR B . n A 1 29 GLY 29 41 41 GLY GLY B . n A 1 30 THR 30 42 42 THR THR B . n A 1 31 TYR 31 43 43 TYR TYR B . n A 1 32 GLU 32 44 44 GLU GLU B . n A 1 33 SER 33 45 45 SER SER B . n A 1 34 ALA 34 46 46 ALA ALA B . n A 1 35 VAL 35 47 47 VAL VAL B . n A 1 36 GLY 36 48 48 GLY GLY B . n A 1 37 ASN 37 49 49 ASN ASN B . n A 1 38 ALA 38 50 50 ALA ALA B . n A 1 39 GLU 39 51 51 GLU GLU B . n A 1 40 SER 40 52 52 SER SER B . n A 1 41 ARG 41 53 53 ARG ARG B . n A 1 42 TYR 42 54 54 TYR TYR B . n A 1 43 VAL 43 55 55 VAL VAL B . n A 1 44 LEU 44 56 56 LEU LEU B . n A 1 45 THR 45 57 57 THR THR B . n A 1 46 GLY 46 58 58 GLY GLY B . n A 1 47 ARG 47 59 59 ARG ARG B . n A 1 48 TYR 48 60 60 TYR TYR B . n A 1 49 ASP 49 61 61 ASP ASP B . n A 1 50 SER 50 62 62 SER SER B . n A 1 51 ALA 51 63 63 ALA ALA B . n A 1 52 PRO 52 64 64 PRO PRO B . n A 1 53 ALA 53 65 65 ALA ALA B . n A 1 54 THR 54 66 66 THR THR B . n A 1 55 ASP 55 67 67 ASP ASP B . n A 1 56 GLY 56 68 68 GLY GLY B . n A 1 57 SER 57 69 69 SER SER B . n A 1 58 GLY 58 70 70 GLY GLY B . n A 1 59 THR 59 71 71 THR THR B . n A 1 60 ALA 60 72 72 ALA ALA B . n A 1 61 LEU 61 73 73 LEU LEU B . n A 1 62 GLY 62 74 74 GLY GLY B . n A 1 63 TRP 63 75 75 TRP TRP B . n A 1 64 THR 64 76 76 THR THR B . n A 1 65 VAL 65 77 77 VAL VAL B . n A 1 66 ALA 66 78 78 ALA ALA B . n A 1 67 TRP 67 79 79 TRP TRP B . n A 1 68 LYS 68 80 80 LYS LYS B . n A 1 69 ASN 69 81 81 ASN ASN B . n A 1 70 ASN 70 82 82 ASN ASN B . n A 1 71 TYR 71 83 83 TYR TYR B . n A 1 72 ARG 72 84 84 ARG ARG B . n A 1 73 ASN 73 85 85 ASN ASN B . n A 1 74 ALA 74 86 86 ALA ALA B . n A 1 75 HIS 75 87 87 HIS HIS B . n A 1 76 SER 76 88 88 SER SER B . n A 1 77 ALA 77 89 89 ALA ALA B . n A 1 78 THR 78 90 90 THR THR B . n A 1 79 THR 79 91 91 THR THR B . n A 1 80 TRP 80 92 92 TRP TRP B . n A 1 81 SER 81 93 93 SER SER B . n A 1 82 GLY 82 94 94 GLY GLY B . n A 1 83 GLN 83 95 95 GLN GLN B . n A 1 84 TYR 84 96 96 TYR TYR B . n A 1 85 VAL 85 97 97 VAL VAL B . n A 1 86 GLY 86 98 98 GLY GLY B . n A 1 87 GLY 87 99 99 GLY GLY B . n A 1 88 ALA 88 100 100 ALA ALA B . n A 1 89 GLU 89 101 101 GLU GLU B . n A 1 90 ALA 90 102 102 ALA ALA B . n A 1 91 ARG 91 103 103 ARG ARG B . n A 1 92 ILE 92 104 104 ILE ILE B . n A 1 93 ASN 93 105 105 ASN ASN B . n A 1 94 THR 94 106 106 THR THR B . n A 1 95 GLN 95 107 107 GLN GLN B . n A 1 96 TRP 96 108 108 TRP TRP B . n A 1 97 LEU 97 109 109 LEU LEU B . n A 1 98 LEU 98 110 110 LEU LEU B . n A 1 99 THR 99 111 111 THR THR B . n A 1 100 SER 100 112 112 SER SER B . n A 1 101 GLY 101 113 113 GLY GLY B . n A 1 102 THR 102 114 114 THR THR B . n A 1 103 THR 103 115 115 THR THR B . n A 1 104 GLU 104 116 116 GLU GLU B . n A 1 105 ALA 105 117 117 ALA ALA B . n A 1 106 ASN 106 118 118 ASN ASN B . n A 1 107 ALA 107 119 119 ALA ALA B . n A 1 108 TRP 108 120 120 TRP TRP B . n A 1 109 LYS 109 121 121 LYS LYS B . n A 1 110 SER 110 122 122 SER SER B . n A 1 111 THR 111 123 123 THR THR B . n A 1 112 LEU 112 124 124 LEU LEU B . n A 1 113 VAL 113 125 125 VAL VAL B . n A 1 114 GLY 114 126 126 GLY GLY B . n A 1 115 HIS 115 127 127 HIS HIS B . n A 1 116 ASP 116 128 128 ASP ASP B . n A 1 117 THR 117 129 129 THR THR B . n A 1 118 PHE 118 130 130 PHE PHE B . n A 1 119 THR 119 131 131 THR THR B . n A 1 120 LYS 120 132 132 LYS LYS B . n A 1 121 VAL 121 133 133 VAL VAL B . n A 1 122 LYS 122 134 134 LYS LYS B . n A 1 123 PRO 123 135 135 PRO PRO B . n B 1 1 ALA 1 13 13 ALA ALA D . n B 1 2 GLU 2 14 14 GLU GLU D . n B 1 3 ALA 3 15 15 ALA ALA D . n B 1 4 GLY 4 16 16 GLY GLY D . n B 1 5 ILE 5 17 17 ILE ILE D . n B 1 6 THR 6 18 18 THR THR D . n B 1 7 GLY 7 19 19 GLY GLY D . n B 1 8 THR 8 20 20 THR THR D . n B 1 9 TRP 9 21 21 TRP TRP D . n B 1 10 TYR 10 22 22 TYR TYR D . n B 1 11 ASN 11 23 23 ASN ASN D . n B 1 12 GLN 12 24 24 GLN GLN D . n B 1 13 LEU 13 25 25 LEU LEU D . n B 1 14 GLY 14 26 26 GLY GLY D . n B 1 15 SER 15 27 27 SER SER D . n B 1 16 THR 16 28 28 THR THR D . n B 1 17 PHE 17 29 29 PHE PHE D . n B 1 18 ILE 18 30 30 ILE ILE D . n B 1 19 VAL 19 31 31 VAL VAL D . n B 1 20 THR 20 32 32 THR THR D . n B 1 21 ALA 21 33 33 ALA ALA D . n B 1 22 GLY 22 34 34 GLY GLY D . n B 1 23 ALA 23 35 35 ALA ALA D . n B 1 24 ASP 24 36 36 ASP ASP D . n B 1 25 GLY 25 37 37 GLY GLY D . n B 1 26 ALA 26 38 38 ALA ALA D . n B 1 27 LEU 27 39 39 LEU LEU D . n B 1 28 THR 28 40 40 THR THR D . n B 1 29 GLY 29 41 41 GLY GLY D . n B 1 30 THR 30 42 42 THR THR D . n B 1 31 TYR 31 43 43 TYR TYR D . n B 1 32 GLU 32 44 44 GLU GLU D . n B 1 33 SER 33 45 45 SER SER D . n B 1 34 ALA 34 46 46 ALA ALA D . n B 1 35 VAL 35 47 47 VAL VAL D . n B 1 36 GLY 36 48 48 GLY GLY D . n B 1 37 ASN 37 49 49 ASN ASN D . n B 1 38 ALA 38 50 50 ALA ALA D . n B 1 39 GLU 39 51 51 GLU GLU D . n B 1 40 SER 40 52 52 SER SER D . n B 1 41 ARG 41 53 53 ARG ARG D . n B 1 42 TYR 42 54 54 TYR TYR D . n B 1 43 VAL 43 55 55 VAL VAL D . n B 1 44 LEU 44 56 56 LEU LEU D . n B 1 45 THR 45 57 57 THR THR D . n B 1 46 GLY 46 58 58 GLY GLY D . n B 1 47 ARG 47 59 59 ARG ARG D . n B 1 48 TYR 48 60 60 TYR TYR D . n B 1 49 ASP 49 61 61 ASP ASP D . n B 1 50 SER 50 62 62 SER SER D . n B 1 51 ALA 51 63 63 ALA ALA D . n B 1 52 PRO 52 64 64 PRO PRO D . n B 1 53 ALA 53 65 65 ALA ALA D . n B 1 54 THR 54 66 66 THR THR D . n B 1 55 ASP 55 67 67 ASP ASP D . n B 1 56 GLY 56 68 68 GLY GLY D . n B 1 57 SER 57 69 69 SER SER D . n B 1 58 GLY 58 70 70 GLY GLY D . n B 1 59 THR 59 71 71 THR THR D . n B 1 60 ALA 60 72 72 ALA ALA D . n B 1 61 LEU 61 73 73 LEU LEU D . n B 1 62 GLY 62 74 74 GLY GLY D . n B 1 63 TRP 63 75 75 TRP TRP D . n B 1 64 THR 64 76 76 THR THR D . n B 1 65 VAL 65 77 77 VAL VAL D . n B 1 66 ALA 66 78 78 ALA ALA D . n B 1 67 TRP 67 79 79 TRP TRP D . n B 1 68 LYS 68 80 80 LYS LYS D . n B 1 69 ASN 69 81 81 ASN ASN D . n B 1 70 ASN 70 82 82 ASN ASN D . n B 1 71 TYR 71 83 83 TYR TYR D . n B 1 72 ARG 72 84 84 ARG ARG D . n B 1 73 ASN 73 85 85 ASN ASN D . n B 1 74 ALA 74 86 86 ALA ALA D . n B 1 75 HIS 75 87 87 HIS HIS D . n B 1 76 SER 76 88 88 SER SER D . n B 1 77 ALA 77 89 89 ALA ALA D . n B 1 78 THR 78 90 90 THR THR D . n B 1 79 THR 79 91 91 THR THR D . n B 1 80 TRP 80 92 92 TRP TRP D . n B 1 81 SER 81 93 93 SER SER D . n B 1 82 GLY 82 94 94 GLY GLY D . n B 1 83 GLN 83 95 95 GLN GLN D . n B 1 84 TYR 84 96 96 TYR TYR D . n B 1 85 VAL 85 97 97 VAL VAL D . n B 1 86 GLY 86 98 98 GLY GLY D . n B 1 87 GLY 87 99 99 GLY GLY D . n B 1 88 ALA 88 100 100 ALA ALA D . n B 1 89 GLU 89 101 101 GLU GLU D . n B 1 90 ALA 90 102 102 ALA ALA D . n B 1 91 ARG 91 103 103 ARG ARG D . n B 1 92 ILE 92 104 104 ILE ILE D . n B 1 93 ASN 93 105 105 ASN ASN D . n B 1 94 THR 94 106 106 THR THR D . n B 1 95 GLN 95 107 107 GLN GLN D . n B 1 96 TRP 96 108 108 TRP TRP D . n B 1 97 LEU 97 109 109 LEU LEU D . n B 1 98 LEU 98 110 110 LEU LEU D . n B 1 99 THR 99 111 111 THR THR D . n B 1 100 SER 100 112 112 SER SER D . n B 1 101 GLY 101 113 113 GLY GLY D . n B 1 102 THR 102 114 114 THR THR D . n B 1 103 THR 103 115 115 THR THR D . n B 1 104 GLU 104 116 116 GLU GLU D . n B 1 105 ALA 105 117 117 ALA ALA D . n B 1 106 ASN 106 118 118 ASN ASN D . n B 1 107 ALA 107 119 119 ALA ALA D . n B 1 108 TRP 108 120 120 TRP TRP D . n B 1 109 LYS 109 121 121 LYS LYS D . n B 1 110 SER 110 122 122 SER SER D . n B 1 111 THR 111 123 123 THR THR D . n B 1 112 LEU 112 124 124 LEU LEU D . n B 1 113 VAL 113 125 125 VAL VAL D . n B 1 114 GLY 114 126 126 GLY GLY D . n B 1 115 HIS 115 127 127 HIS HIS D . n B 1 116 ASP 116 128 128 ASP ASP D . n B 1 117 THR 117 129 129 THR THR D . n B 1 118 PHE 118 130 130 PHE PHE D . n B 1 119 THR 119 131 131 THR THR D . n B 1 120 LYS 120 132 132 LYS LYS D . n B 1 121 VAL 121 133 133 VAL VAL D . n B 1 122 LYS 122 134 ? ? ? D . n B 1 123 PRO 123 135 ? ? ? D . n C 2 1 HIS 1 3 3 HIS HIS M . n C 2 2 PRO 2 4 4 PRO PRO M . n C 2 3 GLN 3 5 5 GLN GLN M . n C 2 4 GLY 4 6 6 GLY GLY M . n C 2 5 PRO 5 7 7 PRO PRO M . n C 2 6 PRO 6 8 8 PRO PRO M . n C 2 7 CYS 7 1 1 CYS CYS M . n C 2 8 LYS 8 9 9 LYS LYS M . n C 2 9 NH2 9 10 10 NH2 NH2 M . n D 2 1 HIS 1 3 3 HIS HIS P . n D 2 2 PRO 2 4 4 PRO PRO P . n D 2 3 GLN 3 5 5 GLN GLN P . n D 2 4 GLY 4 6 6 GLY GLY P . n D 2 5 PRO 5 7 7 PRO PRO P . n D 2 6 PRO 6 8 8 PRO PRO P . n D 2 7 CYS 7 1 1 CYS CYS P . n D 2 8 LYS 8 9 9 LYS LYS P . n D 2 9 NH2 9 10 10 NH2 NH2 P . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 LEA 1 2 2 LEA LEA M . F 3 LEA 1 2 2 LEA LEA P . G 4 HOH 1 516 516 HOH HOH B . G 4 HOH 2 517 517 HOH HOH B . G 4 HOH 3 518 518 HOH HOH B . G 4 HOH 4 519 519 HOH HOH B . G 4 HOH 5 520 520 HOH HOH B . G 4 HOH 6 521 521 HOH HOH B . G 4 HOH 7 522 522 HOH HOH B . G 4 HOH 8 524 524 HOH HOH B . G 4 HOH 9 529 529 HOH HOH B . G 4 HOH 10 542 542 HOH HOH B . G 4 HOH 11 563 563 HOH HOH B . G 4 HOH 12 594 594 HOH HOH B . G 4 HOH 13 605 605 HOH HOH B . G 4 HOH 14 606 606 HOH HOH B . G 4 HOH 15 607 607 HOH HOH B . G 4 HOH 16 609 609 HOH HOH B . G 4 HOH 17 610 610 HOH HOH B . G 4 HOH 18 613 613 HOH HOH B . G 4 HOH 19 617 617 HOH HOH B . G 4 HOH 20 618 618 HOH HOH B . G 4 HOH 21 619 619 HOH HOH B . G 4 HOH 22 620 620 HOH HOH B . G 4 HOH 23 621 621 HOH HOH B . G 4 HOH 24 628 628 HOH HOH B . G 4 HOH 25 629 629 HOH HOH B . G 4 HOH 26 637 637 HOH HOH B . G 4 HOH 27 639 639 HOH HOH B . G 4 HOH 28 643 643 HOH HOH B . G 4 HOH 29 646 646 HOH HOH B . G 4 HOH 30 652 652 HOH HOH B . G 4 HOH 31 653 653 HOH HOH B . G 4 HOH 32 660 660 HOH HOH B . G 4 HOH 33 662 662 HOH HOH B . G 4 HOH 34 664 664 HOH HOH B . G 4 HOH 35 669 669 HOH HOH B . G 4 HOH 36 680 680 HOH HOH B . G 4 HOH 37 697 697 HOH HOH B . G 4 HOH 38 727 727 HOH HOH B . G 4 HOH 39 728 728 HOH HOH B . G 4 HOH 40 737 737 HOH HOH B . G 4 HOH 41 742 742 HOH HOH B . G 4 HOH 42 803 803 HOH HOH B . G 4 HOH 43 852 852 HOH HOH B . G 4 HOH 44 856 856 HOH HOH B . G 4 HOH 45 867 867 HOH HOH B . G 4 HOH 46 967 967 HOH HOH B . G 4 HOH 47 972 972 HOH HOH B . G 4 HOH 48 988 988 HOH HOH B . G 4 HOH 49 1022 1022 HOH HOH B . G 4 HOH 50 1026 1026 HOH HOH B . G 4 HOH 51 1077 1077 HOH HOH B . G 4 HOH 52 1141 1141 HOH HOH B . G 4 HOH 53 1164 1164 HOH HOH B . G 4 HOH 54 1190 1190 HOH HOH B . G 4 HOH 55 1212 1212 HOH HOH B . G 4 HOH 56 1236 1236 HOH HOH B . G 4 HOH 57 1239 1239 HOH HOH B . G 4 HOH 58 1243 1243 HOH HOH B . G 4 HOH 59 1272 1272 HOH HOH B . G 4 HOH 60 1284 1284 HOH HOH B . G 4 HOH 61 1292 1292 HOH HOH B . G 4 HOH 62 1301 1301 HOH HOH B . H 4 HOH 1 532 532 HOH HOH D . H 4 HOH 2 570 570 HOH HOH D . H 4 HOH 3 573 573 HOH HOH D . H 4 HOH 4 576 576 HOH HOH D . H 4 HOH 5 581 581 HOH HOH D . H 4 HOH 6 600 600 HOH HOH D . H 4 HOH 7 602 602 HOH HOH D . H 4 HOH 8 612 612 HOH HOH D . H 4 HOH 9 622 622 HOH HOH D . H 4 HOH 10 624 624 HOH HOH D . H 4 HOH 11 625 625 HOH HOH D . H 4 HOH 12 626 626 HOH HOH D . H 4 HOH 13 633 633 HOH HOH D . H 4 HOH 14 635 635 HOH HOH D . H 4 HOH 15 636 636 HOH HOH D . H 4 HOH 16 641 641 HOH HOH D . H 4 HOH 17 644 644 HOH HOH D . H 4 HOH 18 655 655 HOH HOH D . H 4 HOH 19 656 656 HOH HOH D . H 4 HOH 20 663 663 HOH HOH D . H 4 HOH 21 666 666 HOH HOH D . H 4 HOH 22 668 668 HOH HOH D . H 4 HOH 23 670 670 HOH HOH D . H 4 HOH 24 671 671 HOH HOH D . H 4 HOH 25 677 677 HOH HOH D . H 4 HOH 26 679 679 HOH HOH D . H 4 HOH 27 688 688 HOH HOH D . H 4 HOH 28 696 696 HOH HOH D . H 4 HOH 29 701 701 HOH HOH D . H 4 HOH 30 733 733 HOH HOH D . H 4 HOH 31 734 734 HOH HOH D . H 4 HOH 32 741 741 HOH HOH D . H 4 HOH 33 761 761 HOH HOH D . H 4 HOH 34 764 764 HOH HOH D . H 4 HOH 35 802 802 HOH HOH D . H 4 HOH 36 809 809 HOH HOH D . H 4 HOH 37 830 830 HOH HOH D . H 4 HOH 38 842 842 HOH HOH D . H 4 HOH 39 849 849 HOH HOH D . H 4 HOH 40 914 914 HOH HOH D . H 4 HOH 41 926 926 HOH HOH D . H 4 HOH 42 933 933 HOH HOH D . H 4 HOH 43 951 951 HOH HOH D . H 4 HOH 44 961 961 HOH HOH D . H 4 HOH 45 968 968 HOH HOH D . H 4 HOH 46 983 983 HOH HOH D . H 4 HOH 47 992 992 HOH HOH D . H 4 HOH 48 1002 1002 HOH HOH D . H 4 HOH 49 1008 1008 HOH HOH D . H 4 HOH 50 1024 1024 HOH HOH D . H 4 HOH 51 1052 1052 HOH HOH D . H 4 HOH 52 1068 1068 HOH HOH D . H 4 HOH 53 1108 1108 HOH HOH D . H 4 HOH 54 1151 1151 HOH HOH D . H 4 HOH 55 1156 1156 HOH HOH D . H 4 HOH 56 1157 1157 HOH HOH D . H 4 HOH 57 1163 1163 HOH HOH D . H 4 HOH 58 1178 1178 HOH HOH D . H 4 HOH 59 1182 1182 HOH HOH D . H 4 HOH 60 1183 1183 HOH HOH D . H 4 HOH 61 1195 1195 HOH HOH D . H 4 HOH 62 1197 1197 HOH HOH D . H 4 HOH 63 1205 1205 HOH HOH D . H 4 HOH 64 1207 1207 HOH HOH D . H 4 HOH 65 1211 1211 HOH HOH D . H 4 HOH 66 1230 1230 HOH HOH D . H 4 HOH 67 1235 1235 HOH HOH D . H 4 HOH 68 1246 1246 HOH HOH D . H 4 HOH 69 1259 1259 HOH HOH D . H 4 HOH 70 1262 1262 HOH HOH D . H 4 HOH 71 1265 1265 HOH HOH D . H 4 HOH 72 1274 1274 HOH HOH D . H 4 HOH 73 1276 1276 HOH HOH D . H 4 HOH 74 1278 1278 HOH HOH D . H 4 HOH 75 1286 1286 HOH HOH D . H 4 HOH 76 1290 1290 HOH HOH D . H 4 HOH 77 1300 1300 HOH HOH D . I 4 HOH 1 1028 1028 HOH HOH M . I 4 HOH 2 1140 1140 HOH HOH M . I 4 HOH 3 1241 1241 HOH HOH M . I 4 HOH 4 1250 1250 HOH HOH M . J 4 HOH 1 599 599 HOH HOH P . J 4 HOH 2 957 957 HOH HOH P . J 4 HOH 3 1180 1180 HOH HOH P . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA octameric 8 2 software_defined_assembly PISA hexadecameric 16 3 software_defined_assembly PQS octameric 8 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E,F,G,H,I,J 2 1,3,4,2 A,B,C,D,E,F,G,H,I,J 3 1,4 A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 13800 ? 1 MORE -76 ? 1 'SSA (A^2)' 21830 ? 2 'ABSA (A^2)' 31000 ? 2 MORE -178 ? 2 'SSA (A^2)' 40270 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 94.8400000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 3_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 94.8400000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B HOH 519 ? G HOH . 2 1 B HOH 852 ? G HOH . 3 1 B HOH 1239 ? G HOH . 4 1 B HOH 1284 ? G HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-03-18 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Derived calculations' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 BIOTEX 'data reduction' '(MSC)' ? 3 X-PLOR phasing . ? 4 # _pdbx_entry_details.entry_id 1VWI _pdbx_entry_details.compound_details ;DISULFIDE BOND OF PHAGE-DISCOVERED PEPTIDE IS REPLACED WITH THIOETHER. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O M GLY 6 ? ? H2 M HOH 1250 ? C 0.61 2 1 OH B TYR 22 ? ? H2 B HOH 519 ? C 0.77 3 1 HH B TYR 22 ? ? H1 B HOH 519 ? C 0.84 4 1 HH B TYR 22 ? ? O B HOH 519 ? C 0.98 5 1 HE D ARG 59 ? ? H2 B HOH 605 ? ? 1.21 6 1 OH B TYR 22 ? ? O B HOH 519 ? C 1.25 7 1 HA2 D GLY 68 ? ? H2 D HOH 696 ? C 1.29 8 1 CE2 B TYR 22 ? ? O B HOH 1239 ? C 1.31 9 1 HH B TYR 22 ? ? H2 B HOH 519 ? C 1.34 10 1 H1 B HOH 519 ? C H2 B HOH 1239 ? C 1.34 11 1 OH B TYR 22 ? ? H1 B HOH 519 ? C 1.35 12 1 H B THR 114 ? ? HE21 D GLN 95 ? ? 1.35 13 1 HG2 D GLU 14 ? ? O D HOH 644 ? C 1.36 14 1 H2 B HOH 621 ? ? O B HOH 988 ? ? 1.36 15 1 O1 M LEA 2 ? ? H1 M HOH 1028 ? ? 1.42 16 1 H1 D HOH 581 ? ? O D HOH 1157 ? ? 1.44 17 1 CZ B TYR 22 ? ? H1 B HOH 519 ? C 1.51 18 1 OG B SER 62 ? ? H2 B HOH 856 ? ? 1.51 19 1 O D ALA 102 ? ? H1 D HOH 635 ? ? 1.53 20 1 OG1 B THR 32 ? ? H2 B HOH 1190 ? ? 1.54 21 1 OG1 D THR 71 ? ? H2 D HOH 1183 ? ? 1.55 22 1 H1 D HOH 1195 ? B O D HOH 1207 ? ? 1.56 23 1 OG D SER 112 ? ? H1 D HOH 626 ? ? 1.57 24 1 OH D TYR 60 ? ? H2 D HOH 809 ? ? 1.60 25 1 O M GLY 6 ? ? O M HOH 1250 ? C 1.65 26 1 CZ B TYR 22 ? ? O B HOH 1239 ? C 1.75 27 1 CD2 B TYR 22 ? ? O B HOH 1239 ? C 2.03 28 1 CZ B TYR 22 ? ? O B HOH 519 ? C 2.04 29 1 O B HOH 594 ? ? O M HOH 1028 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 H1 B HOH 1284 ? C 1_555 H1 B HOH 1284 ? C 4_556 0.84 2 1 CZ B TYR 22 ? ? 1_555 H1 B HOH 1239 ? C 3_655 0.87 3 1 H1 B HOH 1239 ? C 1_555 H2 B HOH 1239 ? C 3_655 0.90 4 1 O B HOH 1239 ? C 1_555 H1 B HOH 1239 ? C 3_655 0.93 5 1 O B HOH 519 ? C 1_555 H1 B HOH 519 ? C 3_655 0.98 6 1 O B HOH 852 ? C 1_555 H2 B HOH 852 ? C 3_655 0.99 7 1 O B HOH 1284 ? C 1_555 H1 B HOH 1284 ? C 4_556 1.03 8 1 O B HOH 1284 ? C 1_555 H2 B HOH 1284 ? C 4_556 1.03 9 1 HE2 B TYR 22 ? ? 1_555 H2 B HOH 1239 ? C 3_655 1.08 10 1 O B HOH 519 ? C 1_555 H2 B HOH 519 ? C 3_655 1.19 11 1 O B HOH 1239 ? C 1_555 H2 B HOH 1239 ? C 3_655 1.19 12 1 O B GLU 51 ? ? 1_555 H1 D HOH 1246 ? C 6_554 1.20 13 1 CE2 B TYR 22 ? ? 1_555 H1 B HOH 1239 ? C 3_655 1.21 14 1 H1 B HOH 519 ? C 1_555 H1 B HOH 1239 ? C 3_655 1.32 15 1 O B GLU 51 ? ? 1_555 O D HOH 1246 ? C 6_554 1.49 16 1 O B GLY 41 ? ? 1_555 H1 D HOH 1276 ? ? 6_555 1.57 17 1 CE2 B TYR 22 ? ? 1_555 H2 B HOH 1239 ? C 3_655 1.58 18 1 O B SER 45 ? ? 1_555 H1 D HOH 968 ? ? 6_554 1.58 19 1 O B HOH 852 ? C 1_555 O B HOH 852 ? C 3_655 1.98 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 NE2 B HIS 87 ? B CD2 B HIS 87 ? B 1.302 1.373 -0.071 0.011 N 2 1 NE2 B HIS 127 ? ? CD2 B HIS 127 ? ? 1.299 1.373 -0.074 0.011 N 3 1 NE2 D HIS 87 ? A CD2 D HIS 87 ? A 1.297 1.373 -0.076 0.011 N 4 1 NE2 D HIS 127 ? ? CD2 D HIS 127 ? ? 1.305 1.373 -0.068 0.011 N 5 1 NE2 M HIS 3 ? A CD2 M HIS 3 ? A 1.293 1.373 -0.080 0.011 N 6 1 NE2 M HIS 3 ? B CD2 M HIS 3 ? B 1.298 1.373 -0.075 0.011 N 7 1 NE2 P HIS 3 ? A CD2 P HIS 3 ? A 1.292 1.373 -0.081 0.011 N 8 1 NE2 P HIS 3 ? B CD2 P HIS 3 ? B 1.290 1.373 -0.083 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG B TRP 21 ? ? CD1 B TRP 21 ? ? NE1 B TRP 21 ? ? 101.83 110.10 -8.27 1.00 N 2 1 CD1 B TRP 21 ? ? NE1 B TRP 21 ? ? CE2 B TRP 21 ? ? 118.50 109.00 9.50 0.90 N 3 1 NE1 B TRP 21 ? ? CE2 B TRP 21 ? ? CZ2 B TRP 21 ? ? 140.35 130.40 9.95 1.10 N 4 1 NE1 B TRP 21 ? ? CE2 B TRP 21 ? ? CD2 B TRP 21 ? ? 100.45 107.30 -6.85 1.00 N 5 1 NE B ARG 53 ? ? CZ B ARG 53 ? ? NH2 B ARG 53 ? ? 117.29 120.30 -3.01 0.50 N 6 1 NE B ARG 59 ? ? CZ B ARG 59 ? ? NH2 B ARG 59 ? ? 116.03 120.30 -4.27 0.50 N 7 1 CG B TRP 75 ? ? CD1 B TRP 75 ? ? NE1 B TRP 75 ? ? 102.66 110.10 -7.44 1.00 N 8 1 CD1 B TRP 75 ? ? NE1 B TRP 75 ? ? CE2 B TRP 75 ? ? 117.62 109.00 8.62 0.90 N 9 1 NE1 B TRP 75 ? ? CE2 B TRP 75 ? ? CZ2 B TRP 75 ? ? 137.63 130.40 7.23 1.10 N 10 1 N B ALA 78 ? ? CA B ALA 78 ? ? C B ALA 78 ? ? 94.65 111.00 -16.35 2.70 N 11 1 CG B TRP 79 ? ? CD1 B TRP 79 ? ? NE1 B TRP 79 ? ? 103.17 110.10 -6.93 1.00 N 12 1 CD1 B TRP 79 ? ? NE1 B TRP 79 ? ? CE2 B TRP 79 ? ? 117.04 109.00 8.04 0.90 N 13 1 CG B TRP 92 ? ? CD1 B TRP 92 ? ? NE1 B TRP 92 ? ? 102.15 110.10 -7.95 1.00 N 14 1 CD1 B TRP 92 ? ? NE1 B TRP 92 ? ? CE2 B TRP 92 ? ? 117.50 109.00 8.50 0.90 N 15 1 NE1 B TRP 92 ? ? CE2 B TRP 92 ? ? CZ2 B TRP 92 ? ? 138.07 130.40 7.67 1.10 N 16 1 CG B TRP 108 ? ? CD1 B TRP 108 ? ? NE1 B TRP 108 ? ? 102.64 110.10 -7.46 1.00 N 17 1 CD1 B TRP 108 ? ? NE1 B TRP 108 ? ? CE2 B TRP 108 ? ? 117.61 109.00 8.61 0.90 N 18 1 NE1 B TRP 108 ? ? CE2 B TRP 108 ? ? CZ2 B TRP 108 ? ? 137.55 130.40 7.15 1.10 N 19 1 CG B TRP 120 ? ? CD1 B TRP 120 ? ? NE1 B TRP 120 ? ? 103.54 110.10 -6.56 1.00 N 20 1 CD1 B TRP 120 ? ? NE1 B TRP 120 ? ? CE2 B TRP 120 ? ? 116.86 109.00 7.86 0.90 N 21 1 NE1 B TRP 120 ? ? CE2 B TRP 120 ? ? CZ2 B TRP 120 ? ? 139.28 130.40 8.88 1.10 N 22 1 CG D TRP 21 ? ? CD1 D TRP 21 ? ? NE1 D TRP 21 ? ? 103.06 110.10 -7.04 1.00 N 23 1 CD1 D TRP 21 ? ? NE1 D TRP 21 ? ? CE2 D TRP 21 ? ? 116.93 109.00 7.93 0.90 N 24 1 NE1 D TRP 21 ? ? CE2 D TRP 21 ? ? CZ2 D TRP 21 ? ? 139.11 130.40 8.71 1.10 N 25 1 NE1 D TRP 21 ? ? CE2 D TRP 21 ? ? CD2 D TRP 21 ? ? 101.29 107.30 -6.01 1.00 N 26 1 N D PHE 29 ? ? CA D PHE 29 ? ? CB D PHE 29 ? ? 98.11 110.60 -12.49 1.80 N 27 1 N D SER 45 ? ? CA D SER 45 ? ? CB D SER 45 ? ? 99.49 110.50 -11.01 1.50 N 28 1 N D GLY 48 ? ? CA D GLY 48 ? ? C D GLY 48 ? ? 94.98 113.10 -18.12 2.50 N 29 1 N D SER 52 ? ? CA D SER 52 ? ? C D SER 52 ? ? 94.32 111.00 -16.68 2.70 N 30 1 CG D TRP 75 ? ? CD1 D TRP 75 ? ? NE1 D TRP 75 ? ? 103.10 110.10 -7.00 1.00 N 31 1 CD1 D TRP 75 ? ? NE1 D TRP 75 ? ? CE2 D TRP 75 ? ? 117.71 109.00 8.71 0.90 N 32 1 NE1 D TRP 75 ? ? CE2 D TRP 75 ? ? CZ2 D TRP 75 ? ? 138.92 130.40 8.52 1.10 N 33 1 NE1 D TRP 75 ? ? CE2 D TRP 75 ? ? CD2 D TRP 75 ? ? 100.85 107.30 -6.45 1.00 N 34 1 CG D TRP 79 ? ? CD1 D TRP 79 ? ? NE1 D TRP 79 ? ? 102.26 110.10 -7.84 1.00 N 35 1 CD1 D TRP 79 ? ? NE1 D TRP 79 ? ? CE2 D TRP 79 ? ? 118.32 109.00 9.32 0.90 N 36 1 NE1 D TRP 79 ? ? CE2 D TRP 79 ? ? CZ2 D TRP 79 ? ? 139.08 130.40 8.68 1.10 N 37 1 NE1 D TRP 79 ? ? CE2 D TRP 79 ? ? CD2 D TRP 79 ? ? 101.19 107.30 -6.11 1.00 N 38 1 CG D TRP 92 ? ? CD1 D TRP 92 ? ? NE1 D TRP 92 ? ? 102.33 110.10 -7.77 1.00 N 39 1 CD1 D TRP 92 ? ? NE1 D TRP 92 ? ? CE2 D TRP 92 ? ? 117.69 109.00 8.69 0.90 N 40 1 NE1 D TRP 92 ? ? CE2 D TRP 92 ? ? CZ2 D TRP 92 ? ? 137.92 130.40 7.52 1.10 N 41 1 CG D TRP 108 ? ? CD1 D TRP 108 ? ? NE1 D TRP 108 ? ? 103.13 110.10 -6.97 1.00 N 42 1 CD1 D TRP 108 ? ? NE1 D TRP 108 ? ? CE2 D TRP 108 ? ? 116.49 109.00 7.49 0.90 N 43 1 CG D TRP 120 ? ? CD1 D TRP 120 ? ? NE1 D TRP 120 ? ? 102.54 110.10 -7.56 1.00 N 44 1 CD1 D TRP 120 ? ? NE1 D TRP 120 ? ? CE2 D TRP 120 ? ? 118.00 109.00 9.00 0.90 N 45 1 NE1 D TRP 120 ? ? CE2 D TRP 120 ? ? CZ2 D TRP 120 ? ? 138.48 130.40 8.08 1.10 N 46 1 NE1 D TRP 120 ? ? CE2 D TRP 120 ? ? CD2 D TRP 120 ? ? 100.79 107.30 -6.51 1.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA B 46 ? ? -58.05 100.24 2 1 VAL B 47 ? ? 57.18 -174.45 3 1 ASN B 49 ? ? 76.69 179.71 4 1 GLU B 51 ? ? -74.86 36.75 5 1 PRO B 64 ? ? -48.25 83.72 6 1 THR B 66 ? ? -81.47 49.61 7 1 GLU D 14 ? ? -17.25 -85.49 8 1 ALA D 15 ? ? -92.13 41.51 9 1 ALA D 46 ? ? -25.66 141.11 10 1 VAL D 47 ? ? 67.38 -22.28 11 1 ASN D 49 ? ? 53.73 -153.66 12 1 ALA D 50 ? ? -122.89 -58.26 13 1 GLU D 51 ? ? -119.85 67.97 14 1 ALA D 65 ? ? -143.12 54.74 15 1 ASP D 67 ? ? -69.66 33.24 16 1 PRO M 4 ? ? -53.63 10.22 17 1 PRO M 7 ? ? -64.90 -178.40 18 1 PRO M 8 ? ? -58.21 176.61 19 1 PRO P 4 ? ? -59.69 8.02 20 1 PRO P 7 ? ? -63.59 -176.02 21 1 CYS P 1 ? ? -108.21 63.10 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ALA _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 63 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 64 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 136.75 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG B 103 ? ? 0.117 'SIDE CHAIN' 2 1 ARG D 53 ? ? 0.148 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 B ARG 53 ? NE ? A ARG 41 NE 2 1 Y 0 B ARG 53 ? CZ ? A ARG 41 CZ 3 1 Y 0 B ARG 53 ? NH1 ? A ARG 41 NH1 4 1 Y 0 B ARG 53 ? NH2 ? A ARG 41 NH2 5 1 Y 0 B ARG 84 ? NE ? A ARG 72 NE 6 1 Y 0 B ARG 84 ? CZ ? A ARG 72 CZ 7 1 Y 0 B ARG 84 ? NH1 ? A ARG 72 NH1 8 1 Y 0 B ARG 84 ? NH2 ? A ARG 72 NH2 9 1 Y 0 B GLU 116 ? CB ? A GLU 104 CB # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 0 B GLY 48 ? A GLY 36 2 1 Y 0 B PRO 64 ? A PRO 52 3 1 Y 0 D ALA 46 ? B ALA 34 4 1 Y 0 D VAL 47 ? B VAL 35 5 1 Y 0 D GLY 48 ? B GLY 36 6 1 Y 1 D LYS 134 ? B LYS 122 7 1 Y 1 D PRO 135 ? B PRO 123 8 1 Y 0 M LYS 9 ? C LYS 8 9 1 Y 0 M NH2 10 ? C NH2 9 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'PENTANOIC ACID' LEA 4 water HOH #