data_1VYI # _entry.id 1VYI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.307 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1VYI PDBE EBI-15023 WWPDB D_1290015023 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VYI _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2004-04-30 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mavrakis, M.' 1 'McCarthy, A.A.' 2 'Roche, S.' 3 'Blondel, D.' 4 'Ruigrok, R.W.H.' 5 # _citation.id primary _citation.title 'Structure and Function of the C-Terminal Domain of the Polymerase Cofactor of Rabies Virus' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 343 _citation.page_first 819 _citation.page_last ? _citation.year 2004 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15476803 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2004.08.071 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mavrakis, M.' 1 ? primary 'Mccarthy, A.A.' 2 ? primary 'Roche, S.' 3 ? primary 'Blondel, D.' 4 ? primary 'Ruigrok, R.W.H.' 5 ? # _cell.entry_id 1VYI _cell.length_a 44.300 _cell.length_b 44.400 _cell.length_c 106.210 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VYI _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA POLYMERASE ALPHA SUBUNIT' 12712.466 1 2.7.7.48 ? 'C-TERMINAL DOMAIN, RESIDUES 186-297' ? 2 non-polymer syn GLYCEROL 92.094 5 ? ? ? ? 3 water nat water 18.015 119 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PHOSPHOPROTEIN, NONSTRUCTURAL PROTEIN, M1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;WSATNEEDDLSVEAEIAHQIAESFSKKYKFPSRSSGIFLYNFEQLKMNLDDIVKEAKNVPGVTRLAHDGSKIPLRCVLGW VALANSKKFQLLVEADKLSKIMQDDLNRYTSC ; _entity_poly.pdbx_seq_one_letter_code_can ;WSATNEEDDLSVEAEIAHQIAESFSKKYKFPSRSSGIFLYNFEQLKMNLDDIVKEAKNVPGVTRLAHDGSKIPLRCVLGW VALANSKKFQLLVEADKLSKIMQDDLNRYTSC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TRP n 1 2 SER n 1 3 ALA n 1 4 THR n 1 5 ASN n 1 6 GLU n 1 7 GLU n 1 8 ASP n 1 9 ASP n 1 10 LEU n 1 11 SER n 1 12 VAL n 1 13 GLU n 1 14 ALA n 1 15 GLU n 1 16 ILE n 1 17 ALA n 1 18 HIS n 1 19 GLN n 1 20 ILE n 1 21 ALA n 1 22 GLU n 1 23 SER n 1 24 PHE n 1 25 SER n 1 26 LYS n 1 27 LYS n 1 28 TYR n 1 29 LYS n 1 30 PHE n 1 31 PRO n 1 32 SER n 1 33 ARG n 1 34 SER n 1 35 SER n 1 36 GLY n 1 37 ILE n 1 38 PHE n 1 39 LEU n 1 40 TYR n 1 41 ASN n 1 42 PHE n 1 43 GLU n 1 44 GLN n 1 45 LEU n 1 46 LYS n 1 47 MET n 1 48 ASN n 1 49 LEU n 1 50 ASP n 1 51 ASP n 1 52 ILE n 1 53 VAL n 1 54 LYS n 1 55 GLU n 1 56 ALA n 1 57 LYS n 1 58 ASN n 1 59 VAL n 1 60 PRO n 1 61 GLY n 1 62 VAL n 1 63 THR n 1 64 ARG n 1 65 LEU n 1 66 ALA n 1 67 HIS n 1 68 ASP n 1 69 GLY n 1 70 SER n 1 71 LYS n 1 72 ILE n 1 73 PRO n 1 74 LEU n 1 75 ARG n 1 76 CYS n 1 77 VAL n 1 78 LEU n 1 79 GLY n 1 80 TRP n 1 81 VAL n 1 82 ALA n 1 83 LEU n 1 84 ALA n 1 85 ASN n 1 86 SER n 1 87 LYS n 1 88 LYS n 1 89 PHE n 1 90 GLN n 1 91 LEU n 1 92 LEU n 1 93 VAL n 1 94 GLU n 1 95 ALA n 1 96 ASP n 1 97 LYS n 1 98 LEU n 1 99 SER n 1 100 LYS n 1 101 ILE n 1 102 MET n 1 103 GLN n 1 104 ASP n 1 105 ASP n 1 106 LEU n 1 107 ASN n 1 108 ARG n 1 109 TYR n 1 110 THR n 1 111 SER n 1 112 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name ' Rabies virus CVS-11' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11294 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'SPODOPTERA FRUGIPERDA' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line Sf21 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type BACULOVIRUS _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ACNPVM1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RRPP_RABVC _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P22363 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VYI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 112 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P22363 _struct_ref_seq.db_align_beg 186 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 297 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 186 _struct_ref_seq.pdbx_auth_seq_align_end 297 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1VYI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_percent_sol 47.7 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2M (NH4)2SO4 0.1M BIS-TRIS, PH=5.5, 25% (W/V) PEG3350, pH 5.50' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2003-09-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9393 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.9393 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1VYI _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 1.500 _reflns.number_obs 19783 _reflns.number_all ? _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs 0.06300 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.8000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.000 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.60 _reflns_shell.percent_possible_all 93.6 _reflns_shell.Rmerge_I_obs 0.21000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.100 _reflns_shell.pdbx_redundancy 5.50 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1VYI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 18941 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.0 _refine.ls_d_res_high 1.5 _refine.ls_percent_reflns_obs 99.7 _refine.ls_R_factor_obs 0.174 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.173 _refine.ls_R_factor_R_free 0.195 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1017 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 19.892 _refine.aniso_B[1][1] 0.41 _refine.aniso_B[2][2] 0.41 _refine.aniso_B[3][3] -0.61 _refine.aniso_B[1][2] 0.20 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.071 _refine.pdbx_overall_ESU_R_Free 0.070 _refine.overall_SU_ML 0.040 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.045 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 886 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 119 _refine_hist.number_atoms_total 1035 _refine_hist.d_res_high 1.5 _refine_hist.d_res_low 30.0 # _struct.entry_id 1VYI _struct.title 'Structure of the c-terminal domain of the polymerase cofactor of rabies virus: insights in function and evolution.' _struct.pdbx_descriptor 'RNA POLYMERASE ALPHA SUBUNIT (E.C.2.7.7.48)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VYI _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'TRANSFERASE, RABIES VIRUS, REPLICATION, TRANSCRIPTION, POLYMERASE, RNA-DIRECTED RNA POLYMERASE, PHOSPHORYLATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 4 ? SER A 23 ? THR A 189 SER A 208 1 ? 20 HELX_P HELX_P2 2 ASN A 41 ? LYS A 46 ? ASN A 226 LYS A 231 5 ? 6 HELX_P HELX_P3 3 ASN A 48 ? LYS A 57 ? ASN A 233 LYS A 242 1 ? 10 HELX_P HELX_P4 4 GLY A 61 ? ASP A 68 ? GLY A 246 ASP A 253 1 ? 8 HELX_P HELX_P5 5 PRO A 73 ? SER A 86 ? PRO A 258 SER A 271 1 ? 14 HELX_P HELX_P6 6 SER A 86 ? VAL A 93 ? SER A 271 VAL A 278 1 ? 8 HELX_P HELX_P7 7 GLU A 94 ? ARG A 108 ? GLU A 279 ARG A 293 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 TYR A 28 ? PRO A 31 ? TYR A 213 PRO A 216 AA 2 ILE A 37 ? TYR A 40 ? ILE A 222 TYR A 225 # _pdbx_struct_sheet_hbond.sheet_id AA _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id PHE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 30 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 215 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id PHE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 38 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 223 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL A 1297' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL A 1298' AC3 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL A 1300' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 1301' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 1302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 SER A 32 ? SER A 217 . ? 1_555 ? 2 AC1 8 ARG A 33 ? ARG A 218 . ? 1_555 ? 3 AC1 8 SER A 34 ? SER A 219 . ? 1_555 ? 4 AC1 8 GLN A 44 ? GLN A 229 . ? 5_674 ? 5 AC1 8 LYS A 88 ? LYS A 273 . ? 5_674 ? 6 AC1 8 LEU A 92 ? LEU A 277 . ? 1_555 ? 7 AC1 8 HOH G . ? HOH A 2114 . ? 1_555 ? 8 AC1 8 HOH G . ? HOH A 2115 . ? 1_555 ? 9 AC2 8 GLN A 44 ? GLN A 229 . ? 1_555 ? 10 AC2 8 ASN A 85 ? ASN A 270 . ? 1_555 ? 11 AC2 8 SER A 86 ? SER A 271 . ? 1_555 ? 12 AC2 8 LYS A 87 ? LYS A 272 . ? 1_555 ? 13 AC2 8 LYS A 88 ? LYS A 273 . ? 1_555 ? 14 AC2 8 GOL D . ? GOL A 1300 . ? 3_574 ? 15 AC2 8 HOH G . ? HOH A 2052 . ? 1_555 ? 16 AC2 8 HOH G . ? HOH A 2117 . ? 3_574 ? 17 AC3 8 SER A 11 ? SER A 196 . ? 1_555 ? 18 AC3 8 ARG A 33 ? ARG A 218 . ? 4_565 ? 19 AC3 8 LYS A 46 ? LYS A 231 . ? 2_775 ? 20 AC3 8 LEU A 91 ? LEU A 276 . ? 4_565 ? 21 AC3 8 GOL C . ? GOL A 1298 . ? 2_775 ? 22 AC3 8 HOH G . ? HOH A 2016 . ? 1_555 ? 23 AC3 8 HOH G . ? HOH A 2116 . ? 2_775 ? 24 AC3 8 HOH G . ? HOH A 2117 . ? 1_555 ? 25 AC4 5 ASP A 9 ? ASP A 194 . ? 4_455 ? 26 AC4 5 GLU A 13 ? GLU A 198 . ? 4_455 ? 27 AC4 5 LYS A 54 ? LYS A 239 . ? 4_455 ? 28 AC4 5 ASP A 96 ? ASP A 281 . ? 1_555 ? 29 AC4 5 HOH G . ? HOH A 2055 . ? 4_455 ? 30 AC5 4 GLY A 61 ? GLY A 246 . ? 1_555 ? 31 AC5 4 THR A 63 ? THR A 248 . ? 1_555 ? 32 AC5 4 ARG A 64 ? ARG A 249 . ? 1_555 ? 33 AC5 4 HOH G . ? HOH A 2118 . ? 1_555 ? # _database_PDB_matrix.entry_id 1VYI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1VYI _atom_sites.fract_transf_matrix[1][1] 0.022573 _atom_sites.fract_transf_matrix[1][2] 0.013033 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026007 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009415 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'MODEL 0 SER A 296 C-ALPHA IS PLANAR' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TRP 1 186 186 TRP TRP A . n A 1 2 SER 2 187 187 SER SER A . n A 1 3 ALA 3 188 188 ALA ALA A . n A 1 4 THR 4 189 189 THR THR A . n A 1 5 ASN 5 190 190 ASN ASN A . n A 1 6 GLU 6 191 191 GLU GLU A . n A 1 7 GLU 7 192 192 GLU GLU A . n A 1 8 ASP 8 193 193 ASP ASP A . n A 1 9 ASP 9 194 194 ASP ASP A . n A 1 10 LEU 10 195 195 LEU LEU A . n A 1 11 SER 11 196 196 SER SER A . n A 1 12 VAL 12 197 197 VAL VAL A . n A 1 13 GLU 13 198 198 GLU GLU A . n A 1 14 ALA 14 199 199 ALA ALA A . n A 1 15 GLU 15 200 200 GLU GLU A . n A 1 16 ILE 16 201 201 ILE ILE A . n A 1 17 ALA 17 202 202 ALA ALA A . n A 1 18 HIS 18 203 203 HIS HIS A . n A 1 19 GLN 19 204 204 GLN GLN A . n A 1 20 ILE 20 205 205 ILE ILE A . n A 1 21 ALA 21 206 206 ALA ALA A . n A 1 22 GLU 22 207 207 GLU GLU A . n A 1 23 SER 23 208 208 SER SER A . n A 1 24 PHE 24 209 209 PHE PHE A . n A 1 25 SER 25 210 210 SER SER A . n A 1 26 LYS 26 211 211 LYS LYS A . n A 1 27 LYS 27 212 212 LYS LYS A . n A 1 28 TYR 28 213 213 TYR TYR A . n A 1 29 LYS 29 214 214 LYS LYS A . n A 1 30 PHE 30 215 215 PHE PHE A . n A 1 31 PRO 31 216 216 PRO PRO A . n A 1 32 SER 32 217 217 SER SER A . n A 1 33 ARG 33 218 218 ARG ARG A . n A 1 34 SER 34 219 219 SER SER A . n A 1 35 SER 35 220 220 SER SER A . n A 1 36 GLY 36 221 221 GLY GLY A . n A 1 37 ILE 37 222 222 ILE ILE A . n A 1 38 PHE 38 223 223 PHE PHE A . n A 1 39 LEU 39 224 224 LEU LEU A . n A 1 40 TYR 40 225 225 TYR TYR A . n A 1 41 ASN 41 226 226 ASN ASN A . n A 1 42 PHE 42 227 227 PHE PHE A . n A 1 43 GLU 43 228 228 GLU GLU A . n A 1 44 GLN 44 229 229 GLN GLN A . n A 1 45 LEU 45 230 230 LEU LEU A . n A 1 46 LYS 46 231 231 LYS LYS A . n A 1 47 MET 47 232 232 MET MET A . n A 1 48 ASN 48 233 233 ASN ASN A . n A 1 49 LEU 49 234 234 LEU LEU A . n A 1 50 ASP 50 235 235 ASP ASP A . n A 1 51 ASP 51 236 236 ASP ASP A . n A 1 52 ILE 52 237 237 ILE ILE A . n A 1 53 VAL 53 238 238 VAL VAL A . n A 1 54 LYS 54 239 239 LYS LYS A . n A 1 55 GLU 55 240 240 GLU GLU A . n A 1 56 ALA 56 241 241 ALA ALA A . n A 1 57 LYS 57 242 242 LYS LYS A . n A 1 58 ASN 58 243 243 ASN ASN A . n A 1 59 VAL 59 244 244 VAL VAL A . n A 1 60 PRO 60 245 245 PRO PRO A . n A 1 61 GLY 61 246 246 GLY GLY A . n A 1 62 VAL 62 247 247 VAL VAL A . n A 1 63 THR 63 248 248 THR THR A . n A 1 64 ARG 64 249 249 ARG ARG A . n A 1 65 LEU 65 250 250 LEU LEU A . n A 1 66 ALA 66 251 251 ALA ALA A . n A 1 67 HIS 67 252 252 HIS HIS A . n A 1 68 ASP 68 253 253 ASP ASP A . n A 1 69 GLY 69 254 254 GLY GLY A . n A 1 70 SER 70 255 255 SER SER A . n A 1 71 LYS 71 256 256 LYS LYS A . n A 1 72 ILE 72 257 257 ILE ILE A . n A 1 73 PRO 73 258 258 PRO PRO A . n A 1 74 LEU 74 259 259 LEU LEU A . n A 1 75 ARG 75 260 260 ARG ARG A . n A 1 76 CYS 76 261 261 CYS CYS A . n A 1 77 VAL 77 262 262 VAL VAL A . n A 1 78 LEU 78 263 263 LEU LEU A . n A 1 79 GLY 79 264 264 GLY GLY A . n A 1 80 TRP 80 265 265 TRP TRP A . n A 1 81 VAL 81 266 266 VAL VAL A . n A 1 82 ALA 82 267 267 ALA ALA A . n A 1 83 LEU 83 268 268 LEU LEU A . n A 1 84 ALA 84 269 269 ALA ALA A . n A 1 85 ASN 85 270 270 ASN ASN A . n A 1 86 SER 86 271 271 SER SER A . n A 1 87 LYS 87 272 272 LYS LYS A . n A 1 88 LYS 88 273 273 LYS LYS A . n A 1 89 PHE 89 274 274 PHE PHE A . n A 1 90 GLN 90 275 275 GLN GLN A . n A 1 91 LEU 91 276 276 LEU LEU A . n A 1 92 LEU 92 277 277 LEU LEU A . n A 1 93 VAL 93 278 278 VAL VAL A . n A 1 94 GLU 94 279 279 GLU GLU A . n A 1 95 ALA 95 280 280 ALA ALA A . n A 1 96 ASP 96 281 281 ASP ASP A . n A 1 97 LYS 97 282 282 LYS LYS A . n A 1 98 LEU 98 283 283 LEU LEU A . n A 1 99 SER 99 284 284 SER SER A . n A 1 100 LYS 100 285 285 LYS LYS A . n A 1 101 ILE 101 286 286 ILE ILE A . n A 1 102 MET 102 287 287 MET MET A . n A 1 103 GLN 103 288 288 GLN GLN A . n A 1 104 ASP 104 289 289 ASP ASP A . n A 1 105 ASP 105 290 290 ASP ASP A . n A 1 106 LEU 106 291 291 LEU LEU A . n A 1 107 ASN 107 292 292 ASN ASN A . n A 1 108 ARG 108 293 293 ARG ARG A . n A 1 109 TYR 109 294 294 TYR TYR A . n A 1 110 THR 110 295 295 THR THR A . n A 1 111 SER 111 296 296 SER SER A . n A 1 112 CYS 112 297 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 1297 1297 GOL GOL A . C 2 GOL 1 1298 1298 GOL GOL A . D 2 GOL 1 1300 1300 GOL GOL A . E 2 GOL 1 1301 1301 GOL GOL A . F 2 GOL 1 1302 1302 GOL GOL A . G 3 HOH 1 2001 2001 HOH HOH A . G 3 HOH 2 2002 2002 HOH HOH A . G 3 HOH 3 2003 2003 HOH HOH A . G 3 HOH 4 2004 2004 HOH HOH A . G 3 HOH 5 2005 2005 HOH HOH A . G 3 HOH 6 2006 2006 HOH HOH A . G 3 HOH 7 2007 2007 HOH HOH A . G 3 HOH 8 2008 2008 HOH HOH A . G 3 HOH 9 2009 2009 HOH HOH A . G 3 HOH 10 2010 2010 HOH HOH A . G 3 HOH 11 2011 2011 HOH HOH A . G 3 HOH 12 2012 2012 HOH HOH A . G 3 HOH 13 2013 2013 HOH HOH A . G 3 HOH 14 2014 2014 HOH HOH A . G 3 HOH 15 2015 2015 HOH HOH A . G 3 HOH 16 2016 2016 HOH HOH A . G 3 HOH 17 2017 2017 HOH HOH A . G 3 HOH 18 2018 2018 HOH HOH A . G 3 HOH 19 2019 2019 HOH HOH A . G 3 HOH 20 2020 2020 HOH HOH A . G 3 HOH 21 2021 2021 HOH HOH A . G 3 HOH 22 2022 2022 HOH HOH A . G 3 HOH 23 2023 2023 HOH HOH A . G 3 HOH 24 2024 2024 HOH HOH A . G 3 HOH 25 2025 2025 HOH HOH A . G 3 HOH 26 2026 2026 HOH HOH A . G 3 HOH 27 2027 2027 HOH HOH A . G 3 HOH 28 2028 2028 HOH HOH A . G 3 HOH 29 2029 2029 HOH HOH A . G 3 HOH 30 2030 2030 HOH HOH A . G 3 HOH 31 2031 2031 HOH HOH A . G 3 HOH 32 2032 2032 HOH HOH A . G 3 HOH 33 2033 2033 HOH HOH A . G 3 HOH 34 2034 2034 HOH HOH A . G 3 HOH 35 2035 2035 HOH HOH A . G 3 HOH 36 2036 2036 HOH HOH A . G 3 HOH 37 2037 2037 HOH HOH A . G 3 HOH 38 2038 2038 HOH HOH A . G 3 HOH 39 2039 2039 HOH HOH A . G 3 HOH 40 2040 2040 HOH HOH A . G 3 HOH 41 2041 2041 HOH HOH A . G 3 HOH 42 2042 2042 HOH HOH A . G 3 HOH 43 2043 2043 HOH HOH A . G 3 HOH 44 2044 2044 HOH HOH A . G 3 HOH 45 2045 2045 HOH HOH A . G 3 HOH 46 2046 2046 HOH HOH A . G 3 HOH 47 2047 2047 HOH HOH A . G 3 HOH 48 2048 2048 HOH HOH A . G 3 HOH 49 2049 2049 HOH HOH A . G 3 HOH 50 2050 2050 HOH HOH A . G 3 HOH 51 2051 2051 HOH HOH A . G 3 HOH 52 2052 2052 HOH HOH A . G 3 HOH 53 2053 2053 HOH HOH A . G 3 HOH 54 2054 2054 HOH HOH A . G 3 HOH 55 2055 2055 HOH HOH A . G 3 HOH 56 2056 2056 HOH HOH A . G 3 HOH 57 2057 2057 HOH HOH A . G 3 HOH 58 2058 2058 HOH HOH A . G 3 HOH 59 2059 2059 HOH HOH A . G 3 HOH 60 2060 2060 HOH HOH A . G 3 HOH 61 2061 2061 HOH HOH A . G 3 HOH 62 2062 2062 HOH HOH A . G 3 HOH 63 2063 2063 HOH HOH A . G 3 HOH 64 2064 2064 HOH HOH A . G 3 HOH 65 2065 2065 HOH HOH A . G 3 HOH 66 2066 2066 HOH HOH A . G 3 HOH 67 2067 2067 HOH HOH A . G 3 HOH 68 2068 2068 HOH HOH A . G 3 HOH 69 2069 2069 HOH HOH A . G 3 HOH 70 2070 2070 HOH HOH A . G 3 HOH 71 2071 2071 HOH HOH A . G 3 HOH 72 2072 2072 HOH HOH A . G 3 HOH 73 2073 2073 HOH HOH A . G 3 HOH 74 2074 2074 HOH HOH A . G 3 HOH 75 2075 2075 HOH HOH A . G 3 HOH 76 2076 2076 HOH HOH A . G 3 HOH 77 2077 2077 HOH HOH A . G 3 HOH 78 2078 2078 HOH HOH A . G 3 HOH 79 2079 2079 HOH HOH A . G 3 HOH 80 2080 2080 HOH HOH A . G 3 HOH 81 2081 2081 HOH HOH A . G 3 HOH 82 2082 2082 HOH HOH A . G 3 HOH 83 2083 2083 HOH HOH A . G 3 HOH 84 2084 2084 HOH HOH A . G 3 HOH 85 2085 2085 HOH HOH A . G 3 HOH 86 2086 2086 HOH HOH A . G 3 HOH 87 2087 2087 HOH HOH A . G 3 HOH 88 2088 2088 HOH HOH A . G 3 HOH 89 2089 2089 HOH HOH A . G 3 HOH 90 2090 2090 HOH HOH A . G 3 HOH 91 2091 2091 HOH HOH A . G 3 HOH 92 2092 2092 HOH HOH A . G 3 HOH 93 2093 2093 HOH HOH A . G 3 HOH 94 2094 2094 HOH HOH A . G 3 HOH 95 2095 2095 HOH HOH A . G 3 HOH 96 2096 2096 HOH HOH A . G 3 HOH 97 2097 2097 HOH HOH A . G 3 HOH 98 2098 2098 HOH HOH A . G 3 HOH 99 2099 2099 HOH HOH A . G 3 HOH 100 2100 2100 HOH HOH A . G 3 HOH 101 2101 2101 HOH HOH A . G 3 HOH 102 2102 2102 HOH HOH A . G 3 HOH 103 2103 2103 HOH HOH A . G 3 HOH 104 2104 2104 HOH HOH A . G 3 HOH 105 2105 2105 HOH HOH A . G 3 HOH 106 2106 2106 HOH HOH A . G 3 HOH 107 2107 2107 HOH HOH A . G 3 HOH 108 2108 2108 HOH HOH A . G 3 HOH 109 2109 2109 HOH HOH A . G 3 HOH 110 2110 2110 HOH HOH A . G 3 HOH 111 2111 2111 HOH HOH A . G 3 HOH 112 2112 2112 HOH HOH A . G 3 HOH 113 2113 2113 HOH HOH A . G 3 HOH 114 2114 2114 HOH HOH A . G 3 HOH 115 2115 2115 HOH HOH A . G 3 HOH 116 2116 2116 HOH HOH A . G 3 HOH 117 2117 2117 HOH HOH A . G 3 HOH 118 2118 2118 HOH HOH A . G 3 HOH 119 2119 2119 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-10-15 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-04-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' Other 6 4 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_PDB_rev 2 4 'Structure model' database_PDB_rev_record 3 4 'Structure model' entity_src_gen 4 4 'Structure model' pdbx_database_proc 5 4 'Structure model' pdbx_database_status 6 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 7 4 'Structure model' struct_biol # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_entity_src_gen.gene_src_strain' 2 4 'Structure model' '_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id' 3 4 'Structure model' '_entity_src_gen.pdbx_gene_src_scientific_name' 4 4 'Structure model' '_entity_src_gen.pdbx_host_org_cell_line' 5 4 'Structure model' '_pdbx_database_status.recvd_author_approval' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data reduction' . ? 1 XSCALE 'data scaling' . ? 2 SOLVE/RESOLVE phasing . ? 3 AMoRE phasing . ? 4 REFMAC refinement . ? 5 # _pdbx_entry_details.entry_id 1VYI _pdbx_entry_details.compound_details ;THIS PROTEIN IS PROBABLY A COMPONENT OF THE ACTIVE POLYMERASE AND MAY FUNCTION IN TEMPLATE BINDING. CATALYTIC ACTIVITY: N NUCLEOSIDE TRIPHOSPHATE = N DIPHOSPHATE + {RNA}(N). ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 191 ? ? O A HOH 2009 ? ? 1.16 2 1 CD A GLU 191 ? ? O A HOH 2009 ? ? 1.47 3 1 OE2 A GLU 191 ? ? O A HOH 2009 ? ? 1.87 4 1 O3 A GOL 1297 ? ? O A HOH 2114 ? ? 2.01 5 1 NE2 A HIS 203 ? ? O A HOH 2020 ? ? 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O3 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GOL _pdbx_validate_symm_contact.auth_seq_id_1 1300 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NZ _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 LYS _pdbx_validate_symm_contact.auth_seq_id_2 231 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_775 _pdbx_validate_symm_contact.dist 2.07 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A GLU 191 ? ? CD A GLU 191 ? ? 1.828 1.515 0.313 0.015 N 2 1 CD A ARG 249 ? ? NE A ARG 249 ? ? 1.268 1.460 -0.192 0.017 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 295 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -99.36 _pdbx_validate_torsion.psi 30.23 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id SER _pdbx_validate_chiral.auth_seq_id 296 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id CYS _pdbx_unobs_or_zero_occ_residues.auth_seq_id 297 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id CYS _pdbx_unobs_or_zero_occ_residues.label_seq_id 112 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH #