data_1VYY # _entry.id 1VYY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1VYY PDBE EBI-15180 WWPDB D_1290015180 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2006-03-16 _pdbx_database_PDB_obs_spr.pdb_id 2CHH _pdbx_database_PDB_obs_spr.replace_pdb_id 1VYY _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1UQX _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'RALSTONIA SOLANACEARUM LECTIN (RS-IIL) IN COMPLEX WITH ALPHA-METHYLMANNOSIDE' # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1VYY _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2004-05-07 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sudakevitz, D.' 1 'Kostlanova, N.' 2 'Blatman-Jan, G.' 3 'Lerrer, B.' 4 'Wimmerova, M.' 5 'Katcoff, D.J.' 6 'Mitchell, E.P.' 7 'Imberty, A.' 8 'Gilboa-Garber, N.' 9 # _citation.id primary _citation.title ;The Structure of Ralstonia Solanacearum High-Affinity Mannose-Binding Lectin Rs-Iil Resolved at 1.0A Resolution in Complex with D-Mannose ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Sudakevitz, D.' 1 primary 'Kostlanova, N.' 2 primary 'Blatman-Jan, G.' 3 primary 'Mitchell, E.P.' 4 primary 'Lerrer, B.' 5 primary 'Wimmerova, M.' 6 primary 'Katcoff, D.J.' 7 primary 'Imberty, A.' 8 primary 'Gilboa-Garber, N.' 9 # _cell.entry_id 1VYY _cell.length_a 59.292 _cell.length_b 62.064 _cell.length_c 74.893 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VYY _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man LECTIN 11607.798 1 ? ? ? D-MANNOSE 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 non-polymer syn UNKNOWN 103.120 1 ? ? ? ? 4 non-polymer man BETA-D-MANNOSE 180.156 1 ? ? ? ? 5 non-polymer man ALPHA-D-MANNOSE 180.156 1 ? ? ? ? 6 water nat water 18.015 220 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HYPOTHETICAL PROTEIN RSC3288' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AQQGVFTLPANTSFGVTAFANAANTQTIQVLVDNVVKATFTGSGTSDKLLGSQVLNSGSGAIKIQVSVNGKPSDLVSNQT ILANKLNFAMVGSEDGTDNDYNDGIAVLNWPLG ; _entity_poly.pdbx_seq_one_letter_code_can ;AQQGVFTLPANTSFGVTAFANAANTQTIQVLVDNVVKATFTGSGTSDKLLGSQVLNSGSGAIKIQVSVNGKPSDLVSNQT ILANKLNFAMVGSEDGTDNDYNDGIAVLNWPLG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLN n 1 3 GLN n 1 4 GLY n 1 5 VAL n 1 6 PHE n 1 7 THR n 1 8 LEU n 1 9 PRO n 1 10 ALA n 1 11 ASN n 1 12 THR n 1 13 SER n 1 14 PHE n 1 15 GLY n 1 16 VAL n 1 17 THR n 1 18 ALA n 1 19 PHE n 1 20 ALA n 1 21 ASN n 1 22 ALA n 1 23 ALA n 1 24 ASN n 1 25 THR n 1 26 GLN n 1 27 THR n 1 28 ILE n 1 29 GLN n 1 30 VAL n 1 31 LEU n 1 32 VAL n 1 33 ASP n 1 34 ASN n 1 35 VAL n 1 36 VAL n 1 37 LYS n 1 38 ALA n 1 39 THR n 1 40 PHE n 1 41 THR n 1 42 GLY n 1 43 SER n 1 44 GLY n 1 45 THR n 1 46 SER n 1 47 ASP n 1 48 LYS n 1 49 LEU n 1 50 LEU n 1 51 GLY n 1 52 SER n 1 53 GLN n 1 54 VAL n 1 55 LEU n 1 56 ASN n 1 57 SER n 1 58 GLY n 1 59 SER n 1 60 GLY n 1 61 ALA n 1 62 ILE n 1 63 LYS n 1 64 ILE n 1 65 GLN n 1 66 VAL n 1 67 SER n 1 68 VAL n 1 69 ASN n 1 70 GLY n 1 71 LYS n 1 72 PRO n 1 73 SER n 1 74 ASP n 1 75 LEU n 1 76 VAL n 1 77 SER n 1 78 ASN n 1 79 GLN n 1 80 THR n 1 81 ILE n 1 82 LEU n 1 83 ALA n 1 84 ASN n 1 85 LYS n 1 86 LEU n 1 87 ASN n 1 88 PHE n 1 89 ALA n 1 90 MET n 1 91 VAL n 1 92 GLY n 1 93 SER n 1 94 GLU n 1 95 ASP n 1 96 GLY n 1 97 THR n 1 98 ASP n 1 99 ASN n 1 100 ASP n 1 101 TYR n 1 102 ASN n 1 103 ASP n 1 104 GLY n 1 105 ILE n 1 106 ALA n 1 107 VAL n 1 108 LEU n 1 109 ASN n 1 110 TRP n 1 111 PRO n 1 112 LEU n 1 113 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'RALSTONIA SOLANACEARUM' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 11696 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector 'ESCHERICHIA COLI' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET25B+ _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8XUA5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q8XUA5 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VYY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8XUA5 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 114 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 113 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA D-saccharide . BETA-D-MANNOSE ? 'C6 H12 O6' 180.156 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN D-saccharide . ALPHA-D-MANNOSE ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNK 'L-peptide linking' . UNKNOWN ? 'C4 H9 N O2' 103.120 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1VYY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.7 _exptl_crystal.density_percent_sol 48.0 _exptl_crystal.description ;MOLECULAR REPLACEMENT WAS USED TO LOCATE THE CALCIUM POSITIONS AND THEN ACORN TO GENERATE PHASING FOR MODEL RECONSTRUCTION WITH ARPWARP ; # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.2 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;5UL DROPS OF 10MG/ML PROTEIN DISSOLVED IN WATER MIXED WITH 5UL DROPS OF 8% PEG 10000, 0.1M TRIS HCL, PH 8.2 WITH MANNOSE AT 270UG/ML ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2003-08-15 _diffrn_detector.details 'TOROIDAL MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator SILICON _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.939 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-EH4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-EH4 _diffrn_source.pdbx_wavelength 0.939 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1VYY _reflns.observed_criterion_sigma_I . _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 18.60 _reflns.d_resolution_high 1.00 _reflns.number_obs 73739 _reflns.number_all ? _reflns.percent_possible_obs 98.97 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 4.5061 _reflns.B_iso_Wilson_estimate 5.582 _reflns.pdbx_redundancy 2.92 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.00 _reflns_shell.d_res_low 1.03 _reflns_shell.percent_possible_all 97.31 _reflns_shell.Rmerge_I_obs 0.39 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.72 _reflns_shell.pdbx_redundancy 2.90 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1VYY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 70014 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.47 _refine.ls_d_res_high 1.00 _refine.ls_percent_reflns_obs 98.78 _refine.ls_R_factor_obs 0.10321 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.10277 _refine.ls_R_factor_R_free 0.11151 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 3721 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.985 _refine.correlation_coeff_Fo_to_Fc_free 0.984 _refine.B_iso_mean 7.697 _refine.aniso_B[1][1] -0.08 _refine.aniso_B[2][2] 0.48 _refine.aniso_B[3][3] -0.40 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. MET 90 IS MODELLED AS TWO CONFORMATIONS. UNK 1 IS AN UNKNOWN ATOM NEARBY TO MET 90. THE MET 90 CONFORMER B HAS AN UNUSUALLY SHORT SD-CE BOND LENGTH. THIS COULD BE DUE TO RADIATION DAMAGE EFFECTS THAT WERE NOT UNDERSTOOD IN THIS INSTANCE. DATA COLLECTED AT LOWER RESOLUTION WITH A LOWER DOSE DID NOT SHOW THE SAME DISTORTION. ; _refine.pdbx_starting_model 'PDB ENTRY 1UQX' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.015 _refine.pdbx_overall_ESU_R_Free 0.015 _refine.overall_SU_ML 0.009 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.179 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 817 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 220 _refine_hist.number_atoms_total 1064 _refine_hist.d_res_high 1.00 _refine_hist.d_res_low 18.47 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.023 0.021 ? 979 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 851 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.892 1.967 ? 1355 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.686 3.000 ? 2013 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.965 5.000 ? 140 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.123 0.200 ? 167 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 1164 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.003 0.020 ? 171 'X-RAY DIFFRACTION' ? r_nbd_refined 0.279 0.200 ? 178 'X-RAY DIFFRACTION' ? r_nbd_other 0.277 0.200 ? 1031 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.097 0.200 ? 633 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.214 0.200 ? 128 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.058 0.200 ? 7 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.333 0.200 ? 22 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.305 0.200 ? 44 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.161 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.511 1.500 ? 641 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.249 2.000 ? 1051 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.814 3.000 ? 338 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.862 4.500 ? 303 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.000 _refine_ls_shell.d_res_low 1.026 _refine_ls_shell.number_reflns_R_work 5035 _refine_ls_shell.R_factor_R_work 0.252 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.252 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 248 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1VYY _struct.title 'Ralstonia solanacearum high-affinity mannose-binding lectin at 1.0A resolution in complex with D-mannose' _struct.pdbx_descriptor LECTIN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VYY _struct_keywords.pdbx_keywords LECTIN _struct_keywords.text 'LECTIN, SUGAR-BINDING PROTEIN, D-MANNOSE, PLANT PATHOGEN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 6 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? B CA . CA ? ? ? 1_555 A ASP 100 OD2 ? ? A CA 1114 A ASP 100 1_555 ? ? ? ? ? ? ? 2.428 ? metalc2 metalc ? ? B CA . CA ? ? ? 1_555 A ASN 21 O ? ? A CA 1114 A ASN 21 1_555 ? ? ? ? ? ? ? 2.352 ? metalc3 metalc ? ? B CA . CA ? ? ? 1_555 A ASN 102 OD1 ? ? A CA 1114 A ASN 102 1_555 ? ? ? ? ? ? ? 2.349 ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 A GLY 113 O ? ? A CA 1114 A GLY 113 4_555 ? ? ? ? ? ? ? 36.764 ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 E BMA . O2 ? ? A CA 1114 A BMA 1117 1_555 ? ? ? ? ? ? ? 2.526 ? metalc6 metalc ? ? B CA . CA ? ? ? 1_555 E BMA . O3 ? ? A CA 1114 A BMA 1117 1_555 ? ? ? ? ? ? ? 2.447 ? metalc7 metalc ? ? B CA . CA ? ? ? 1_555 F MAN . O2 ? ? A CA 1114 A MAN 1118 1_555 ? ? ? ? ? ? ? 2.509 ? metalc8 metalc ? ? B CA . CA ? ? ? 1_555 F MAN . O3 ? ? A CA 1114 A MAN 1118 1_555 ? ? ? ? ? ? ? 2.496 ? metalc9 metalc ? ? B CA . CA ? ? ? 1_555 A ASP 103 OD1 ? ? A CA 1114 A ASP 103 1_555 ? ? ? ? ? ? ? 2.344 ? metalc10 metalc ? ? C CA . CA ? ? ? 1_555 A GLU 94 OE2 ? ? A CA 1115 A GLU 94 1_555 ? ? ? ? ? ? ? 2.400 ? metalc11 metalc ? ? C CA . CA ? ? ? 1_555 A ASP 98 OD1 ? ? A CA 1115 A ASP 98 1_555 ? ? ? ? ? ? ? 2.342 ? metalc12 metalc ? ? C CA . CA ? ? ? 1_555 E BMA . O3 ? ? A CA 1115 A BMA 1117 1_555 ? ? ? ? ? ? ? 2.502 ? metalc13 metalc ? ? C CA . CA ? ? ? 1_555 E BMA . O4 ? ? A CA 1115 A BMA 1117 1_555 ? ? ? ? ? ? ? 2.618 ? metalc14 metalc ? ? C CA . CA ? ? ? 1_555 F MAN . O3 ? ? A CA 1115 A MAN 1118 1_555 ? ? ? ? ? ? ? 2.498 ? metalc15 metalc ? ? C CA . CA ? ? ? 1_555 F MAN . O4 ? ? A CA 1115 A MAN 1118 1_555 ? ? ? ? ? ? ? 2.565 ? metalc16 metalc ? ? C CA . CA ? ? ? 1_555 A GLU 94 OE1 ? ? A CA 1115 A GLU 94 1_555 ? ? ? ? ? ? ? 2.472 ? metalc17 metalc ? ? C CA . CA ? ? ? 1_555 A ASP 103 OD2 ? ? A CA 1115 A ASP 103 1_555 ? ? ? ? ? ? ? 2.404 ? metalc18 metalc ? ? C CA . CA ? ? ? 1_555 A ASP 103 OD1 ? ? A CA 1115 A ASP 103 1_555 ? ? ? ? ? ? ? 2.627 ? metalc19 metalc ? ? C CA . CA ? ? ? 1_555 A ASP 100 OD1 ? ? A CA 1115 A ASP 100 1_555 ? ? ? ? ? ? ? 2.376 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TRP _struct_mon_prot_cis.label_seq_id 110 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TRP _struct_mon_prot_cis.auth_seq_id 110 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 111 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 111 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -12.04 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 4 ? LEU A 8 ? GLY A 4 LEU A 8 AA 2 ALA A 61 ? SER A 67 ? ALA A 61 SER A 67 AA 3 THR A 25 ? VAL A 32 ? THR A 25 VAL A 32 AA 4 VAL A 36 ? SER A 43 ? VAL A 36 SER A 43 AB 1 ASP A 47 ? LEU A 55 ? ASP A 47 LEU A 55 AB 2 SER A 13 ? ASN A 21 ? SER A 13 ASN A 21 AB 3 ASP A 103 ? TRP A 110 ? ASP A 103 TRP A 110 AB 4 LEU A 86 ? GLU A 94 ? LEU A 86 GLU A 94 AB 5 ASP A 74 ? LEU A 82 ? ASP A 74 LEU A 82 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N PHE A 6 ? N PHE A 6 O ILE A 62 ? O ILE A 62 AA 2 3 N SER A 67 ? N SER A 67 O THR A 27 ? O THR A 27 AA 3 4 N VAL A 30 ? N VAL A 30 O ALA A 38 ? O ALA A 38 AB 1 2 N GLN A 53 ? N GLN A 53 O VAL A 16 ? O VAL A 16 AB 2 3 N THR A 17 ? N THR A 17 O VAL A 107 ? O VAL A 107 AB 3 4 N ALA A 106 ? N ALA A 106 O VAL A 91 ? O VAL A 91 AB 4 5 N MET A 90 ? N MET A 90 O ASN A 78 ? O ASN A 78 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 ? ? ? ? ? 5 'CA BINDING SITE FOR CHAIN A' AC2 ? ? ? ? ? 4 'CA BINDING SITE FOR CHAIN A' AC3 ? ? ? ? ? 1 'UNK BINDING SITE FOR CHAIN A' AC4 ? ? ? ? ? 14 'MAN BINDING SITE FOR CHAIN A' AC5 ? ? ? ? ? 13 'MAN BINDING SITE FOR CHAIN A' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 21 ? ASN A 21 . ? 1_555 ? 2 AC1 5 ASP A 100 ? ASP A 100 . ? 1_555 ? 3 AC1 5 ASN A 102 ? ASN A 102 . ? 1_555 ? 4 AC1 5 ASP A 103 ? ASP A 103 . ? 1_555 ? 5 AC1 5 GLY A 113 ? GLY A 113 . ? 1_555 ? 6 AC2 4 GLU A 94 ? GLU A 94 . ? 1_555 ? 7 AC2 4 ASP A 98 ? ASP A 98 . ? 1_555 ? 8 AC2 4 ASP A 100 ? ASP A 100 . ? 1_555 ? 9 AC2 4 ASP A 103 ? ASP A 103 . ? 1_555 ? 10 AC3 1 MET A 90 ? MET A 90 . ? 1_555 ? 11 AC4 14 ASN A 21 ? ASN A 21 . ? 1_555 ? 12 AC4 14 ALA A 22 ? ALA A 22 . ? 1_555 ? 13 AC4 14 ALA A 23 ? ALA A 23 . ? 1_555 ? 14 AC4 14 ASN A 24 ? ASN A 24 . ? 1_555 ? 15 AC4 14 ASN A 34 ? ASN A 34 . ? 1_555 ? 16 AC4 14 THR A 45 ? THR A 45 . ? 1_555 ? 17 AC4 14 GLU A 94 ? GLU A 94 . ? 1_555 ? 18 AC4 14 ASP A 95 ? ASP A 95 . ? 1_555 ? 19 AC4 14 ASP A 98 ? ASP A 98 . ? 1_555 ? 20 AC4 14 ASP A 100 ? ASP A 100 . ? 1_555 ? 21 AC4 14 ASP A 103 ? ASP A 103 . ? 1_555 ? 22 AC4 14 GLY A 113 ? GLY A 113 . ? 1_555 ? 23 AC4 14 HOH G . ? HOH Z 201 . ? 1_555 ? 24 AC4 14 HOH G . ? HOH Z 218 . ? 1_555 ? 25 AC5 13 ASN A 21 ? ASN A 21 . ? 1_555 ? 26 AC5 13 ALA A 22 ? ALA A 22 . ? 1_555 ? 27 AC5 13 ALA A 23 ? ALA A 23 . ? 1_555 ? 28 AC5 13 ASN A 24 ? ASN A 24 . ? 1_555 ? 29 AC5 13 GLU A 94 ? GLU A 94 . ? 1_555 ? 30 AC5 13 ASP A 95 ? ASP A 95 . ? 1_555 ? 31 AC5 13 ASP A 98 ? ASP A 98 . ? 1_555 ? 32 AC5 13 ASP A 100 ? ASP A 100 . ? 1_555 ? 33 AC5 13 ASP A 103 ? ASP A 103 . ? 1_555 ? 34 AC5 13 GLY A 113 ? GLY A 113 . ? 1_555 ? 35 AC5 13 HOH G . ? HOH Z 201 . ? 1_555 ? 36 AC5 13 HOH G . ? HOH Z 219 . ? 1_555 ? 37 AC5 13 HOH G . ? HOH Z 220 . ? 1_555 ? # _database_PDB_matrix.entry_id 1VYY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1VYY _atom_sites.fract_transf_matrix[1][1] 0.016866 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016112 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013352 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 MET 90 90 90 MET MET A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 TRP 110 110 110 TRP TRP A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 GLY 113 113 113 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 1114 1114 CA CA A . C 2 CA 1 1115 1115 CA CA A . D 3 UNK 1 1116 1116 UNK UNK A . E 4 BMA 1 1117 1117 BMA BMA A . F 5 MAN 2 1118 1118 MAN MAN A . G 6 HOH 1 1 1 HOH HOH Z . G 6 HOH 2 2 2 HOH HOH Z . G 6 HOH 3 3 3 HOH HOH Z . G 6 HOH 4 4 4 HOH HOH Z . G 6 HOH 5 5 5 HOH HOH Z . G 6 HOH 6 6 6 HOH HOH Z . G 6 HOH 7 7 7 HOH HOH Z . G 6 HOH 8 8 8 HOH HOH Z . G 6 HOH 9 9 9 HOH HOH Z . G 6 HOH 10 10 10 HOH HOH Z . G 6 HOH 11 11 11 HOH HOH Z . G 6 HOH 12 12 12 HOH HOH Z . G 6 HOH 13 13 13 HOH HOH Z . G 6 HOH 14 14 14 HOH HOH Z . G 6 HOH 15 15 15 HOH HOH Z . G 6 HOH 16 16 16 HOH HOH Z . G 6 HOH 17 17 17 HOH HOH Z . G 6 HOH 18 18 18 HOH HOH Z . G 6 HOH 19 19 19 HOH HOH Z . G 6 HOH 20 20 20 HOH HOH Z . G 6 HOH 21 21 21 HOH HOH Z . G 6 HOH 22 22 22 HOH HOH Z . G 6 HOH 23 23 23 HOH HOH Z . G 6 HOH 24 24 24 HOH HOH Z . G 6 HOH 25 25 25 HOH HOH Z . G 6 HOH 26 26 26 HOH HOH Z . G 6 HOH 27 27 27 HOH HOH Z . G 6 HOH 28 28 28 HOH HOH Z . G 6 HOH 29 29 29 HOH HOH Z . G 6 HOH 30 30 30 HOH HOH Z . G 6 HOH 31 31 31 HOH HOH Z . G 6 HOH 32 32 32 HOH HOH Z . G 6 HOH 33 33 33 HOH HOH Z . G 6 HOH 34 34 34 HOH HOH Z . G 6 HOH 35 35 35 HOH HOH Z . G 6 HOH 36 36 36 HOH HOH Z . G 6 HOH 37 37 37 HOH HOH Z . G 6 HOH 38 38 38 HOH HOH Z . G 6 HOH 39 39 39 HOH HOH Z . G 6 HOH 40 40 40 HOH HOH Z . G 6 HOH 41 41 41 HOH HOH Z . G 6 HOH 42 42 42 HOH HOH Z . G 6 HOH 43 43 43 HOH HOH Z . G 6 HOH 44 44 44 HOH HOH Z . G 6 HOH 45 45 45 HOH HOH Z . G 6 HOH 46 46 46 HOH HOH Z . G 6 HOH 47 47 47 HOH HOH Z . G 6 HOH 48 48 48 HOH HOH Z . G 6 HOH 49 49 49 HOH HOH Z . G 6 HOH 50 50 50 HOH HOH Z . G 6 HOH 51 51 51 HOH HOH Z . G 6 HOH 52 52 52 HOH HOH Z . G 6 HOH 53 53 53 HOH HOH Z . G 6 HOH 54 54 54 HOH HOH Z . G 6 HOH 55 55 55 HOH HOH Z . G 6 HOH 56 56 56 HOH HOH Z . G 6 HOH 57 57 57 HOH HOH Z . G 6 HOH 58 58 58 HOH HOH Z . G 6 HOH 59 59 59 HOH HOH Z . G 6 HOH 60 60 60 HOH HOH Z . G 6 HOH 61 61 61 HOH HOH Z . G 6 HOH 62 62 62 HOH HOH Z . G 6 HOH 63 63 63 HOH HOH Z . G 6 HOH 64 64 64 HOH HOH Z . G 6 HOH 65 65 65 HOH HOH Z . G 6 HOH 66 66 66 HOH HOH Z . G 6 HOH 67 67 67 HOH HOH Z . G 6 HOH 68 68 68 HOH HOH Z . G 6 HOH 69 69 69 HOH HOH Z . G 6 HOH 70 70 70 HOH HOH Z . G 6 HOH 71 71 71 HOH HOH Z . G 6 HOH 72 72 72 HOH HOH Z . G 6 HOH 73 73 73 HOH HOH Z . G 6 HOH 74 74 74 HOH HOH Z . G 6 HOH 75 75 75 HOH HOH Z . G 6 HOH 76 76 76 HOH HOH Z . G 6 HOH 77 77 77 HOH HOH Z . G 6 HOH 78 78 78 HOH HOH Z . G 6 HOH 79 79 79 HOH HOH Z . G 6 HOH 80 80 80 HOH HOH Z . G 6 HOH 81 81 81 HOH HOH Z . G 6 HOH 82 82 82 HOH HOH Z . G 6 HOH 83 83 83 HOH HOH Z . G 6 HOH 84 84 84 HOH HOH Z . G 6 HOH 85 85 85 HOH HOH Z . G 6 HOH 86 86 86 HOH HOH Z . G 6 HOH 87 87 87 HOH HOH Z . G 6 HOH 88 88 88 HOH HOH Z . G 6 HOH 89 89 89 HOH HOH Z . G 6 HOH 90 90 90 HOH HOH Z . G 6 HOH 91 91 91 HOH HOH Z . G 6 HOH 92 92 92 HOH HOH Z . G 6 HOH 93 93 93 HOH HOH Z . G 6 HOH 94 94 94 HOH HOH Z . G 6 HOH 95 95 95 HOH HOH Z . G 6 HOH 96 96 96 HOH HOH Z . G 6 HOH 97 97 97 HOH HOH Z . G 6 HOH 98 98 98 HOH HOH Z . G 6 HOH 99 99 99 HOH HOH Z . G 6 HOH 100 100 100 HOH HOH Z . G 6 HOH 101 101 101 HOH HOH Z . G 6 HOH 102 102 102 HOH HOH Z . G 6 HOH 103 103 103 HOH HOH Z . G 6 HOH 104 104 104 HOH HOH Z . G 6 HOH 105 105 105 HOH HOH Z . G 6 HOH 106 106 106 HOH HOH Z . G 6 HOH 107 107 107 HOH HOH Z . G 6 HOH 108 108 108 HOH HOH Z . G 6 HOH 109 109 109 HOH HOH Z . G 6 HOH 110 110 110 HOH HOH Z . G 6 HOH 111 111 111 HOH HOH Z . G 6 HOH 112 112 112 HOH HOH Z . G 6 HOH 113 113 113 HOH HOH Z . G 6 HOH 114 114 114 HOH HOH Z . G 6 HOH 115 115 115 HOH HOH Z . G 6 HOH 116 116 116 HOH HOH Z . G 6 HOH 117 117 117 HOH HOH Z . G 6 HOH 118 118 118 HOH HOH Z . G 6 HOH 119 119 119 HOH HOH Z . G 6 HOH 120 120 120 HOH HOH Z . G 6 HOH 121 121 121 HOH HOH Z . G 6 HOH 122 122 122 HOH HOH Z . G 6 HOH 123 123 123 HOH HOH Z . G 6 HOH 124 124 124 HOH HOH Z . G 6 HOH 125 125 125 HOH HOH Z . G 6 HOH 126 126 126 HOH HOH Z . G 6 HOH 127 127 127 HOH HOH Z . G 6 HOH 128 128 128 HOH HOH Z . G 6 HOH 129 129 129 HOH HOH Z . G 6 HOH 130 130 130 HOH HOH Z . G 6 HOH 131 131 131 HOH HOH Z . G 6 HOH 132 132 132 HOH HOH Z . G 6 HOH 133 133 133 HOH HOH Z . G 6 HOH 134 134 134 HOH HOH Z . G 6 HOH 135 135 135 HOH HOH Z . G 6 HOH 136 136 136 HOH HOH Z . G 6 HOH 137 137 137 HOH HOH Z . G 6 HOH 138 138 138 HOH HOH Z . G 6 HOH 139 139 139 HOH HOH Z . G 6 HOH 140 140 140 HOH HOH Z . G 6 HOH 141 141 141 HOH HOH Z . G 6 HOH 142 142 142 HOH HOH Z . G 6 HOH 143 143 143 HOH HOH Z . G 6 HOH 144 144 144 HOH HOH Z . G 6 HOH 145 145 145 HOH HOH Z . G 6 HOH 146 146 146 HOH HOH Z . G 6 HOH 147 147 147 HOH HOH Z . G 6 HOH 148 148 148 HOH HOH Z . G 6 HOH 149 149 149 HOH HOH Z . G 6 HOH 150 150 150 HOH HOH Z . G 6 HOH 151 151 151 HOH HOH Z . G 6 HOH 152 152 152 HOH HOH Z . G 6 HOH 153 153 153 HOH HOH Z . G 6 HOH 154 154 154 HOH HOH Z . G 6 HOH 155 155 155 HOH HOH Z . G 6 HOH 156 156 156 HOH HOH Z . G 6 HOH 157 157 157 HOH HOH Z . G 6 HOH 158 158 158 HOH HOH Z . G 6 HOH 159 159 159 HOH HOH Z . G 6 HOH 160 160 160 HOH HOH Z . G 6 HOH 161 161 161 HOH HOH Z . G 6 HOH 162 162 162 HOH HOH Z . G 6 HOH 163 163 163 HOH HOH Z . G 6 HOH 164 164 164 HOH HOH Z . G 6 HOH 165 165 165 HOH HOH Z . G 6 HOH 166 166 166 HOH HOH Z . G 6 HOH 167 167 167 HOH HOH Z . G 6 HOH 168 168 168 HOH HOH Z . G 6 HOH 169 169 169 HOH HOH Z . G 6 HOH 170 170 170 HOH HOH Z . G 6 HOH 171 171 171 HOH HOH Z . G 6 HOH 172 172 172 HOH HOH Z . G 6 HOH 173 173 173 HOH HOH Z . G 6 HOH 174 174 174 HOH HOH Z . G 6 HOH 175 175 175 HOH HOH Z . G 6 HOH 176 176 176 HOH HOH Z . G 6 HOH 177 177 177 HOH HOH Z . G 6 HOH 178 178 178 HOH HOH Z . G 6 HOH 179 179 179 HOH HOH Z . G 6 HOH 180 180 180 HOH HOH Z . G 6 HOH 181 181 181 HOH HOH Z . G 6 HOH 182 182 182 HOH HOH Z . G 6 HOH 183 183 183 HOH HOH Z . G 6 HOH 184 184 184 HOH HOH Z . G 6 HOH 185 185 185 HOH HOH Z . G 6 HOH 186 186 186 HOH HOH Z . G 6 HOH 187 187 187 HOH HOH Z . G 6 HOH 188 188 188 HOH HOH Z . G 6 HOH 189 189 189 HOH HOH Z . G 6 HOH 190 190 190 HOH HOH Z . G 6 HOH 191 191 191 HOH HOH Z . G 6 HOH 192 192 192 HOH HOH Z . G 6 HOH 193 193 193 HOH HOH Z . G 6 HOH 194 194 194 HOH HOH Z . G 6 HOH 195 195 195 HOH HOH Z . G 6 HOH 196 196 196 HOH HOH Z . G 6 HOH 197 197 197 HOH HOH Z . G 6 HOH 198 198 198 HOH HOH Z . G 6 HOH 199 199 199 HOH HOH Z . G 6 HOH 200 200 200 HOH HOH Z . G 6 HOH 201 201 201 HOH HOH Z . G 6 HOH 202 202 202 HOH HOH Z . G 6 HOH 203 203 203 HOH HOH Z . G 6 HOH 204 204 204 HOH HOH Z . G 6 HOH 205 205 205 HOH HOH Z . G 6 HOH 206 206 206 HOH HOH Z . G 6 HOH 207 207 207 HOH HOH Z . G 6 HOH 208 208 208 HOH HOH Z . G 6 HOH 209 209 209 HOH HOH Z . G 6 HOH 210 210 210 HOH HOH Z . G 6 HOH 211 211 211 HOH HOH Z . G 6 HOH 212 212 212 HOH HOH Z . G 6 HOH 213 213 213 HOH HOH Z . G 6 HOH 214 214 214 HOH HOH Z . G 6 HOH 215 215 215 HOH HOH Z . G 6 HOH 216 216 216 HOH HOH Z . G 6 HOH 217 217 217 HOH HOH Z . G 6 HOH 218 218 218 HOH HOH Z . G 6 HOH 219 219 219 HOH HOH Z . G 6 HOH 220 220 220 HOH HOH Z . # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 Z HOH 18 ? G HOH . 2 1 Z HOH 181 ? G HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 100 ? A ASP 100 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O ? A ASN 21 ? A ASN 21 ? 1_555 152.4 ? 2 OD2 ? A ASP 100 ? A ASP 100 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 OD1 ? A ASN 102 ? A ASN 102 ? 1_555 76.4 ? 3 O ? A ASN 21 ? A ASN 21 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 OD1 ? A ASN 102 ? A ASN 102 ? 1_555 85.6 ? 4 OD2 ? A ASP 100 ? A ASP 100 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O ? A GLY 113 ? A GLY 113 ? 4_555 72.2 ? 5 O ? A ASN 21 ? A ASN 21 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O ? A GLY 113 ? A GLY 113 ? 4_555 107.7 ? 6 OD1 ? A ASN 102 ? A ASN 102 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O ? A GLY 113 ? A GLY 113 ? 4_555 42.2 ? 7 OD2 ? A ASP 100 ? A ASP 100 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O2 ? E BMA . ? A BMA 1117 ? 1_555 116.0 ? 8 O ? A ASN 21 ? A ASN 21 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O2 ? E BMA . ? A BMA 1117 ? 1_555 76.6 ? 9 OD1 ? A ASN 102 ? A ASN 102 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O2 ? E BMA . ? A BMA 1117 ? 1_555 159.7 ? 10 O ? A GLY 113 ? A GLY 113 ? 4_555 CA ? B CA . ? A CA 1114 ? 1_555 O2 ? E BMA . ? A BMA 1117 ? 1_555 154.1 ? 11 OD2 ? A ASP 100 ? A ASP 100 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O3 ? E BMA . ? A BMA 1117 ? 1_555 74.1 ? 12 O ? A ASN 21 ? A ASN 21 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O3 ? E BMA . ? A BMA 1117 ? 1_555 132.0 ? 13 OD1 ? A ASN 102 ? A ASN 102 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O3 ? E BMA . ? A BMA 1117 ? 1_555 135.3 ? 14 O ? A GLY 113 ? A GLY 113 ? 4_555 CA ? B CA . ? A CA 1114 ? 1_555 O3 ? E BMA . ? A BMA 1117 ? 1_555 96.4 ? 15 O2 ? E BMA . ? A BMA 1117 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O3 ? E BMA . ? A BMA 1117 ? 1_555 65.0 ? 16 OD2 ? A ASP 100 ? A ASP 100 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O2 ? F MAN . ? A MAN 1118 ? 1_555 115.1 ? 17 O ? A ASN 21 ? A ASN 21 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O2 ? F MAN . ? A MAN 1118 ? 1_555 77.2 ? 18 OD1 ? A ASN 102 ? A ASN 102 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O2 ? F MAN . ? A MAN 1118 ? 1_555 159.7 ? 19 O ? A GLY 113 ? A GLY 113 ? 4_555 CA ? B CA . ? A CA 1114 ? 1_555 O2 ? F MAN . ? A MAN 1118 ? 1_555 154.8 ? 20 O2 ? E BMA . ? A BMA 1117 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O2 ? F MAN . ? A MAN 1118 ? 1_555 1.0 ? 21 O3 ? E BMA . ? A BMA 1117 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O2 ? F MAN . ? A MAN 1118 ? 1_555 65.0 ? 22 OD2 ? A ASP 100 ? A ASP 100 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O3 ? F MAN . ? A MAN 1118 ? 1_555 73.3 ? 23 O ? A ASN 21 ? A ASN 21 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O3 ? F MAN . ? A MAN 1118 ? 1_555 132.8 ? 24 OD1 ? A ASN 102 ? A ASN 102 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O3 ? F MAN . ? A MAN 1118 ? 1_555 134.8 ? 25 O ? A GLY 113 ? A GLY 113 ? 4_555 CA ? B CA . ? A CA 1114 ? 1_555 O3 ? F MAN . ? A MAN 1118 ? 1_555 96.1 ? 26 O2 ? E BMA . ? A BMA 1117 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O3 ? F MAN . ? A MAN 1118 ? 1_555 65.5 ? 27 O3 ? E BMA . ? A BMA 1117 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O3 ? F MAN . ? A MAN 1118 ? 1_555 0.8 ? 28 O2 ? F MAN . ? A MAN 1118 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 O3 ? F MAN . ? A MAN 1118 ? 1_555 65.4 ? 29 OD2 ? A ASP 100 ? A ASP 100 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 114.6 ? 30 O ? A ASN 21 ? A ASN 21 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 84.9 ? 31 OD1 ? A ASN 102 ? A ASN 102 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 87.8 ? 32 O ? A GLY 113 ? A GLY 113 ? 4_555 CA ? B CA . ? A CA 1114 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 55.9 ? 33 O2 ? E BMA . ? A BMA 1117 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 100.2 ? 34 O3 ? E BMA . ? A BMA 1117 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 75.1 ? 35 O2 ? F MAN . ? A MAN 1118 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 101.0 ? 36 O3 ? F MAN . ? A MAN 1118 ? 1_555 CA ? B CA . ? A CA 1114 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 75.6 ? 37 OE2 ? A GLU 94 ? A GLU 94 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 98 ? A ASP 98 ? 1_555 83.2 ? 38 OE2 ? A GLU 94 ? A GLU 94 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 O3 ? E BMA . ? A BMA 1117 ? 1_555 145.1 ? 39 OD1 ? A ASP 98 ? A ASP 98 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 O3 ? E BMA . ? A BMA 1117 ? 1_555 77.5 ? 40 OE2 ? A GLU 94 ? A GLU 94 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 O4 ? E BMA . ? A BMA 1117 ? 1_555 88.0 ? 41 OD1 ? A ASP 98 ? A ASP 98 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 O4 ? E BMA . ? A BMA 1117 ? 1_555 96.2 ? 42 O3 ? E BMA . ? A BMA 1117 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 O4 ? E BMA . ? A BMA 1117 ? 1_555 65.8 ? 43 OE2 ? A GLU 94 ? A GLU 94 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 O3 ? F MAN . ? A MAN 1118 ? 1_555 144.3 ? 44 OD1 ? A ASP 98 ? A ASP 98 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 O3 ? F MAN . ? A MAN 1118 ? 1_555 76.2 ? 45 O3 ? E BMA . ? A BMA 1117 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 O3 ? F MAN . ? A MAN 1118 ? 1_555 1.4 ? 46 O4 ? E BMA . ? A BMA 1117 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 O3 ? F MAN . ? A MAN 1118 ? 1_555 66.0 ? 47 OE2 ? A GLU 94 ? A GLU 94 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 O4 ? F MAN . ? A MAN 1118 ? 1_555 88.2 ? 48 OD1 ? A ASP 98 ? A ASP 98 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 O4 ? F MAN . ? A MAN 1118 ? 1_555 96.8 ? 49 O3 ? E BMA . ? A BMA 1117 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 O4 ? F MAN . ? A MAN 1118 ? 1_555 65.8 ? 50 O4 ? E BMA . ? A BMA 1117 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 O4 ? F MAN . ? A MAN 1118 ? 1_555 0.6 ? 51 O3 ? F MAN . ? A MAN 1118 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 O4 ? F MAN . ? A MAN 1118 ? 1_555 66.0 ? 52 OE2 ? A GLU 94 ? A GLU 94 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OE1 ? A GLU 94 ? A GLU 94 ? 1_555 53.7 ? 53 OD1 ? A ASP 98 ? A ASP 98 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OE1 ? A GLU 94 ? A GLU 94 ? 1_555 85.4 ? 54 O3 ? E BMA . ? A BMA 1117 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OE1 ? A GLU 94 ? A GLU 94 ? 1_555 150.2 ? 55 O4 ? E BMA . ? A BMA 1117 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OE1 ? A GLU 94 ? A GLU 94 ? 1_555 141.3 ? 56 O3 ? F MAN . ? A MAN 1118 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OE1 ? A GLU 94 ? A GLU 94 ? 1_555 149.5 ? 57 O4 ? F MAN . ? A MAN 1118 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OE1 ? A GLU 94 ? A GLU 94 ? 1_555 141.5 ? 58 OE2 ? A GLU 94 ? A GLU 94 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD2 ? A ASP 103 ? A ASP 103 ? 1_555 80.8 ? 59 OD1 ? A ASP 98 ? A ASP 98 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD2 ? A ASP 103 ? A ASP 103 ? 1_555 164.0 ? 60 O3 ? E BMA . ? A BMA 1117 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD2 ? A ASP 103 ? A ASP 103 ? 1_555 117.0 ? 61 O4 ? E BMA . ? A BMA 1117 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD2 ? A ASP 103 ? A ASP 103 ? 1_555 84.8 ? 62 O3 ? F MAN . ? A MAN 1118 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD2 ? A ASP 103 ? A ASP 103 ? 1_555 118.4 ? 63 O4 ? F MAN . ? A MAN 1118 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD2 ? A ASP 103 ? A ASP 103 ? 1_555 84.4 ? 64 OE1 ? A GLU 94 ? A GLU 94 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD2 ? A ASP 103 ? A ASP 103 ? 1_555 83.9 ? 65 OE2 ? A GLU 94 ? A GLU 94 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 131.6 ? 66 OD1 ? A ASP 98 ? A ASP 98 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 144.7 ? 67 O3 ? E BMA . ? A BMA 1117 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 69.4 ? 68 O4 ? E BMA . ? A BMA 1117 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 81.7 ? 69 O3 ? F MAN . ? A MAN 1118 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 70.8 ? 70 O4 ? F MAN . ? A MAN 1118 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 81.1 ? 71 OE1 ? A GLU 94 ? A GLU 94 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 118.0 ? 72 OD2 ? A ASP 103 ? A ASP 103 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 51.3 ? 73 OE2 ? A GLU 94 ? A GLU 94 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 100 ? A ASP 100 ? 1_555 130.6 ? 74 OD1 ? A ASP 98 ? A ASP 98 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 100 ? A ASP 100 ? 1_555 84.2 ? 75 O3 ? E BMA . ? A BMA 1117 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 100 ? A ASP 100 ? 1_555 76.2 ? 76 O4 ? E BMA . ? A BMA 1117 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 100 ? A ASP 100 ? 1_555 140.9 ? 77 O3 ? F MAN . ? A MAN 1118 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 100 ? A ASP 100 ? 1_555 76.3 ? 78 O4 ? F MAN . ? A MAN 1118 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 100 ? A ASP 100 ? 1_555 140.7 ? 79 OE1 ? A GLU 94 ? A GLU 94 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 100 ? A ASP 100 ? 1_555 77.8 ? 80 OD2 ? A ASP 103 ? A ASP 103 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 100 ? A ASP 100 ? 1_555 105.1 ? 81 OD1 ? A ASP 103 ? A ASP 103 ? 1_555 CA ? C CA . ? A CA 1115 ? 1_555 OD1 ? A ASP 100 ? A ASP 100 ? 1_555 76.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-05-27 2 'Structure model' 1 1 2006-03-16 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: PROVIDED BY DEPOSITOR THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. ; # _pdbx_entry_details.entry_id 1VYY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details 'UNK 500 IS AN UNKNOWN BURIED ATOM ON A SPECIAL POSITION' _pdbx_entry_details.sequence_details 'SEQUENCE WITHOUT INITIATING METHIONINE' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NE2 A GLN 2 ? B O Z HOH 7 ? ? 1.65 2 1 O Z HOH 196 ? ? O Z HOH 197 ? ? 2.07 3 1 OE1 A GLN 2 ? B O Z HOH 6 ? ? 2.08 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 SD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 MET _pdbx_validate_rmsd_bond.auth_seq_id_1 90 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 B _pdbx_validate_rmsd_bond.auth_atom_id_2 CE _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 MET _pdbx_validate_rmsd_bond.auth_seq_id_2 90 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 B _pdbx_validate_rmsd_bond.bond_value 1.326 _pdbx_validate_rmsd_bond.bond_target_value 1.774 _pdbx_validate_rmsd_bond.bond_deviation -0.448 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.056 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 46 ? A -117.92 59.55 2 1 LYS A 85 ? A -155.21 -41.92 3 1 LYS A 85 ? B -134.40 -65.65 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 UNKNOWN UNK 4 BETA-D-MANNOSE BMA 5 ALPHA-D-MANNOSE MAN 6 water HOH #