HEADER LECTIN 07-MAY-04 1VYY OBSLTE 16-MAR-06 1VYY 2CHH TITLE RALSTONIA SOLANACEARUM HIGH-AFFINITY MANNOSE-BINDING LECTIN TITLE 2 AT 1.0A RESOLUTION IN COMPLEX WITH D-MANNOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOTHETICAL PROTEIN RSC3288; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: D-MANNOSE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA SOLANACEARUM; SOURCE 3 ATCC: 11696; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_VECTOR: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET25B+ KEYWDS LECTIN, SUGAR-BINDING PROTEIN, D-MANNOSE, PLANT PATHOGEN EXPDTA X-RAY DIFFRACTION AUTHOR E.P.MITCHELL,M.WIMMEROVA,A.IMBERTY REVDAT 1 27-MAY-05 1VYY 0 JRNL AUTH D.SUDAKEVITZ,N.KOSTLANOVA,G.BLATMAN-JAN, JRNL AUTH 2 E.P.MITCHELL,B.LERRER,M.WIMMEROVA,D.J.KATCOFF, JRNL AUTH 3 A.IMBERTY,N.GILBOA-GARBER JRNL TITL THE STRUCTURE OF RALSTONIA SOLANACEARUM JRNL TITL 2 HIGH-AFFINITY MANNOSE-BINDING LECTIN RS-IIL JRNL TITL 3 RESOLVED AT 1.0A RESOLUTION IN COMPLEX WITH JRNL TITL 4 D-MANNOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 70014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.103 REMARK 3 R VALUE (WORKING SET) : 0.103 REMARK 3 FREE R VALUE : 0.112 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3721 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 1.00 REMARK 3 BIN RESOLUTION RANGE LOW : 1.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5035 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 248 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 1177 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 5.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.015 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.015 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.009 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.179 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.984 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 979 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 851 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1355 ; 1.892 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2013 ; 1.686 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 140 ; 6.965 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 167 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1164 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 171 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 178 ; 0.279 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1031 ; 0.277 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 633 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 128 ; 0.214 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.058 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.333 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.305 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.161 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 641 ; 1.511 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1051 ; 2.249 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 338 ; 2.814 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 303 ; 3.862 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 0 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 0 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. MET 90 IS MODELLED AS TWO CONFORMATIONS. UNK REMARK 3 1 IS AN UNKNOWN ATOM NEARBY TO MET 90. THE MET 90 CONFORMER B REMARK 3 HAS AN UNUSUALLY SHORT SD-CE BOND LENGTH. THIS COULD BE DUE TO REMARK 3 RADIATION DAMAGE EFFECTS THAT WERE NOT UNDERSTOOD IN THIS REMARK 3 INSTANCE. DATA COLLECTED AT LOWER RESOLUTION WITH A LOWER DOSE REMARK 3 DID NOT SHOW THE SAME DISTORTION. REMARK 4 REMARK 4 1VYY COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.103 (2007-05-31) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI. REMARK 100 THE EBI ID CODE IS EBI-15180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-2003 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.20 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939 REMARK 200 MONOCHROMATOR : SILICON REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73739 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 18.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 2.920 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.5061 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1UQX REMARK 200 REMARK 200 REMARK: MOLECULAR REPLACEMENT WAS USED TO LOCATE THE CALCIUM REMARK 200 POSITIONS AND THEN ACORN TO GENERATE PHASING FOR MODEL REMARK 200 RECONSTRUCTION WITH ARPWARP REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 1/2+X,1/2+Y,1/2+Z REMARK 290 6555 1/2-X,1/2-Y,1/2+Z REMARK 290 7555 1/2-X,1/2+Y,1/2-Z REMARK 290 8555 1/2+X,1/2-Y,1/2-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.64600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.03200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 37.44650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.64600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.03200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.44650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.64600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.03200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.44650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.64600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 31.03200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.44650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH Z 18 LIES ON A SPECIAL POSITION. REMARK 375 HOH Z 181 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 C1 BMA A 1117 C1 MAN A 1118 0.01 REMARK 500 C3 BMA A 1117 C3 MAN A 1118 0.03 REMARK 500 C2 BMA A 1117 C2 MAN A 1118 0.05 REMARK 500 C4 BMA A 1117 C4 MAN A 1118 0.05 REMARK 500 O2 BMA A 1117 O2 MAN A 1118 0.05 REMARK 500 O3 BMA A 1117 O3 MAN A 1118 0.06 REMARK 500 O4 BMA A 1117 O4 MAN A 1118 0.06 REMARK 500 C5 BMA A 1117 C5 MAN A 1118 0.08 REMARK 500 O5 BMA A 1117 O5 MAN A 1118 0.09 REMARK 500 C6 BMA A 1117 C6 MAN A 1118 0.11 REMARK 500 O6 BMA A 1117 O6 MAN A 1118 0.11 REMARK 500 O HOH Z 158 O HOH Z 159 0.86 REMARK 500 O HOH Z 28 O HOH Z 29 1.19 REMARK 500 CE LYS A 85 O HOH Z 187 1.25 REMARK 500 O HOH Z 71 O HOH Z 163 1.26 REMARK 500 O HOH Z 86 O HOH Z 88 1.29 REMARK 500 O HOH Z 193 O HOH Z 194 1.30 REMARK 500 O HOH Z 103 O HOH Z 104 1.31 REMARK 500 CE LYS A 85 O HOH Z 188 1.32 REMARK 500 NE2 GLN A 2 O HOH Z 9 1.43 REMARK 500 C6 BMA A 1117 C5 MAN A 1118 1.48 REMARK 500 C2 BMA A 1117 C3 MAN A 1118 1.49 REMARK 500 C4 BMA A 1117 C3 MAN A 1118 1.50 REMARK 500 C4 BMA A 1117 C5 MAN A 1118 1.51 REMARK 500 O HOH Z 63 O HOH Z 65 1.51 REMARK 500 C1 BMA A 1117 C2 MAN A 1118 1.52 REMARK 500 C2 BMA A 1117 C1 MAN A 1118 1.53 REMARK 500 C3 BMA A 1117 C4 MAN A 1118 1.53 REMARK 500 C5 BMA A 1117 C6 MAN A 1118 1.53 REMARK 500 O HOH Z 23 O HOH Z 27 1.53 REMARK 500 C3 BMA A 1117 C2 MAN A 1118 1.54 REMARK 500 C5 BMA A 1117 C4 MAN A 1118 1.54 REMARK 500 O HOH Z 9 O HOH Z 13 1.54 REMARK 500 O HOH Z 133 O HOH Z 138 1.55 REMARK 500 O HOH Z 214 O HOH Z 215 1.58 REMARK 500 NE2 GLN A 2 O HOH Z 13 1.65 REMARK 500 NE2 GLN A 2 O HOH Z 7 1.65 REMARK 500 NZ LYS A 85 O HOH Z 188 1.79 REMARK 500 CE MET A 90 UNK UNK A 1116 1.79 REMARK 500 O HOH Z 46 O HOH Z 49 1.80 REMARK 500 O HOH Z 192 O HOH Z 214 1.80 REMARK 500 SD MET A 90 UNK UNK A 1116 1.91 REMARK 500 O HOH Z 187 O HOH Z 188 1.91 REMARK 500 O HOH Z 23 O HOH Z 180 1.94 REMARK 500 O HOH Z 196 O HOH Z 197 2.07 REMARK 500 OE1 GLN A 2 O HOH Z 6 2.08 REMARK 500 O HOH Z 29 O HOH Z 151 2.12 REMARK 500 O HOH Z 193 O HOH Z 199 2.12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH Z 68 O HOH Z 87 8455 1.59 REMARK 500 O HOH Z 107 O HOH Z 195 8555 1.61 REMARK 500 O HOH Z 188 O HOH Z 207 3555 1.80 REMARK 500 O HOH Z 9 O HOH Z 207 2555 1.88 REMARK 500 CG LYS A 85 O HOH Z 207 3555 1.91 REMARK 500 O HOH Z 4 O HOH Z 174 2555 2.02 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 90 SD MET A 90 CE -0.465 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 2 N - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 SITE_DESCRIPTION: MAN BINDING SITE FOR CHAIN A DBREF 1VYY A 1 113 UNP Q8XUA5 Q8XUA5_RALSO 2 114 SEQRES 1 A 113 ALA GLN GLN GLY VAL PHE THR LEU PRO ALA ASN THR SER SEQRES 2 A 113 PHE GLY VAL THR ALA PHE ALA ASN ALA ALA ASN THR GLN SEQRES 3 A 113 THR ILE GLN VAL LEU VAL ASP ASN VAL VAL LYS ALA THR SEQRES 4 A 113 PHE THR GLY SER GLY THR SER ASP LYS LEU LEU GLY SER SEQRES 5 A 113 GLN VAL LEU ASN SER GLY SER GLY ALA ILE LYS ILE GLN SEQRES 6 A 113 VAL SER VAL ASN GLY LYS PRO SER ASP LEU VAL SER ASN SEQRES 7 A 113 GLN THR ILE LEU ALA ASN LYS LEU ASN PHE ALA MET VAL SEQRES 8 A 113 GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP GLY SEQRES 9 A 113 ILE ALA VAL LEU ASN TRP PRO LEU GLY HET BMA A1117 12 HET MAN A1118 12 HET CA A1114 1 HET CA A1115 1 HETNAM BMA BETA-D-MANNOSE HETNAM MAN ALPHA-D-MANNOSE HETNAM CA CALCIUM ION FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN C6 H12 O6 FORMUL 3 CA 2(CA 2+) FORMUL 6 HOH *220(H2 O) SHEET 1 AA 4 GLY A 4 LEU A 8 0 SHEET 2 AA 4 ALA A 61 SER A 67 -1 O ILE A 62 N PHE A 6 SHEET 3 AA 4 THR A 25 VAL A 32 -1 O THR A 27 N SER A 67 SHEET 4 AA 4 VAL A 36 SER A 43 -1 O ALA A 38 N VAL A 30 SHEET 1 AB 5 ASP A 47 LEU A 55 0 SHEET 2 AB 5 SER A 13 ASN A 21 -1 O VAL A 16 N GLN A 53 SHEET 3 AB 5 ASP A 103 TRP A 110 -1 O VAL A 107 N THR A 17 SHEET 4 AB 5 LEU A 86 GLU A 94 -1 O VAL A 91 N ALA A 106 SHEET 5 AB 5 ASP A 74 LEU A 82 -1 O ASN A 78 N MET A 90 LINK CA CA A1114 OD2 ASP A 100 LINK CA CA A1114 O ASN A 21 LINK CA CA A1114 OD1 ASN A 102 LINK CA CA A1114 O GLY A 113 4555 LINK CA CA A1114 O2 BMA A1117 LINK CA CA A1114 O3 BMA A1117 LINK CA CA A1114 O2 MAN A1118 LINK CA CA A1114 O3 MAN A1118 LINK CA CA A1114 OD1 ASP A 103 LINK CA CA A1115 OE2 GLU A 94 LINK CA CA A1115 OD1 ASP A 98 LINK CA CA A1115 O3 BMA A1117 LINK CA CA A1115 O4 BMA A1117 LINK CA CA A1115 O3 MAN A1118 LINK CA CA A1115 O4 MAN A1118 LINK CA CA A1115 OE1 GLU A 94 LINK CA CA A1115 OD2 ASP A 103 LINK CA CA A1115 OD1 ASP A 103 LINK CA CA A1115 OD1 ASP A 100 LINK C1 BMA A1117 O1 MAN A1118 LINK C1 BMA A1117 O5 MAN A1118 LINK C2 BMA A1117 O2 MAN A1118 LINK C3 BMA A1117 O3 MAN A1118 LINK C4 BMA A1117 O4 MAN A1118 LINK C5 BMA A1117 O5 MAN A1118 LINK C6 BMA A1117 O6 MAN A1118 LINK O1 BMA A1117 C1 MAN A1118 LINK O2 BMA A1117 C2 MAN A1118 LINK O3 BMA A1117 C3 MAN A1118 LINK O4 BMA A1117 C4 MAN A1118 LINK O5 BMA A1117 C1 MAN A1118 LINK O5 BMA A1117 C5 MAN A1118 LINK O6 BMA A1117 C6 MAN A1118 CISPEP 1 TRP A 110 PRO A 111 0 -12.04 SITE 1 AC1 5 ASN A 21 ASP A 100 ASN A 102 ASP A 103 SITE 2 AC1 5 GLY A 113 SITE 1 AC2 4 GLU A 94 ASP A 98 ASP A 100 ASP A 103 SITE 1 AC3 1 MET A 90 SITE 1 AC4 14 ASN A 21 ALA A 22 ALA A 23 ASN A 24 SITE 2 AC4 14 ASN A 34 THR A 45 GLU A 94 ASP A 95 SITE 3 AC4 14 ASP A 98 ASP A 100 ASP A 103 GLY A 113 SITE 4 AC4 14 HOH Z 201 HOH Z 218 SITE 1 AC5 13 ASN A 21 ALA A 22 ALA A 23 ASN A 24 SITE 2 AC5 13 GLU A 94 ASP A 95 ASP A 98 ASP A 100 SITE 3 AC5 13 ASP A 103 GLY A 113 HOH Z 201 HOH Z 219 SITE 4 AC5 13 HOH Z 220 CRYST1 59.292 62.064 74.893 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016866 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013352 0.00000