HEADER TRANSFERASE 21-MAY-04 1VZO TITLE THE STRUCTURE OF THE N-TERMINAL KINASE DOMAIN OF MSK1 REVEALS A NOVEL TITLE 2 AUTOINHIBITORY CONFORMATION FOR A DUAL KINASE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S6 KINASE ALPHA 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL KINASE DOMAIN, RESIDUES 1-350; COMPND 5 SYNONYM: NUCLEAR MITOGEN-AND-STRESS-ACTIVATED KINASE-1, MSK1, RSK- COMPND 6 LIKE PROTEIN KINASE, 90 KDA RIBOSOMAL PROTEIN S6 KINASE 5, RLSK; COMPND 7 EC: 2.7.1.37; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: A COVALENT B-MERCAPTOETHANOL ADDUCT INCLUDED ON COMPND 11 CYSTINE A 304 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: BACMID KEYWDS PROTEIN KINASE, TRANSFERASE, PHOSPHORYLATION, SERINE/THREONINE KEYWDS 2 PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR K.J.SMITH,P.S.CARTER,A.BRIDGES,P.HORROCKS,C.LEWIS,G.PETTMAN,A.CLARKE, AUTHOR 2 M.BROWN,J.HUGHES,M.WILKINSON,B.BAX,A.REITH REVDAT 3 13-DEC-23 1VZO 1 REMARK REVDAT 2 24-FEB-09 1VZO 1 VERSN REVDAT 1 11-JUN-04 1VZO 0 JRNL AUTH K.J.SMITH,P.S.CARTER,A.BRIDGES,P.HORROCKS,C.LEWIS,G.PETTMAN, JRNL AUTH 2 A.CLARKE,M.BROWN,J.HUGHES,M.WILKINSON,B.BAX,A.REITH JRNL TITL THE STRUCTURE OF MSK1 REVEALS A NOVEL AUTOINHIBITORY JRNL TITL 2 CONFORMATION FOR A DUAL KINASE PROTEIN JRNL REF STRUCTURE V. 12 1066 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15274926 JRNL DOI 10.1016/J.STR.2004.02.040 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3400 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2624 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 291 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2532 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.010 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2632 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3556 ; 1.409 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ; 9.510 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 405 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1934 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1073 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 178 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.217 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.095 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1609 ; 2.297 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2594 ; 3.973 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1023 ; 4.546 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 962 ; 6.933 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VZO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1290015309. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 9.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9326 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34183 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ATP REMARK 200 REMARK 200 REMARK: SOME DATA WERE EXCLUDED BECAUSE OF ICE-RINGS WHICH REMARK 200 AFFECTED REFINEMENT REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULPHATE, 0.1M TRIS REMARK 280 PH8.5, PH 9.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.31450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.55900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.88600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.55900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.31450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.88600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 SERINE/THREONINE KINASE THAT MAY PLAY A ROLE IN MEDIATING REMARK 400 THE GROWTH-FACTOR AND STRESS INDUCED ACTIVATION OF THE REMARK 400 TRANSCRIPTION FACTOR CREB. ESSENTIAL ROLE IN THE CONTROL REMARK 400 OF RELA TRANSCRIPTIONAL ACTIVITY IN RESPONSE TO TNF. REMARK 400 REMARK 400 ENGINEERED MUTATION SER 212 ASP, CHAIN A REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 ALA A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 THR A 14 REMARK 465 SER A 15 REMARK 465 ALA A 16 REMARK 465 ASP A 17 REMARK 465 GLY A 18 REMARK 465 GLY A 19 REMARK 465 ASP A 20 REMARK 465 GLY A 21 REMARK 465 GLY A 22 REMARK 465 GLU A 23 REMARK 465 SER A 230 REMARK 465 GLY A 231 REMARK 465 HIS A 232 REMARK 465 SER A 346 REMARK 465 ASN A 347 REMARK 465 PHE A 348 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 24 CG CD OE1 NE2 REMARK 470 LEU A 25 CG CD1 CD2 REMARK 470 ASP A 233 CG OD1 OD2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 ARG A 340 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 341 CG OD1 OD2 REMARK 470 GLU A 342 O CG CD OE1 OE2 REMARK 470 ASP A 344 CG OD1 OD2 REMARK 470 VAL A 345 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2042 O HOH A 2126 2.01 REMARK 500 O HOH A 2075 O HOH A 2158 2.13 REMARK 500 O HOH A 2050 O HOH A 2053 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 297 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 33 -70.18 -125.44 REMARK 500 THR A 123 -153.83 -101.92 REMARK 500 GLU A 124 -70.56 66.12 REMARK 500 GLU A 124 -77.39 -32.92 REMARK 500 THR A 125 -1.42 -166.22 REMARK 500 THR A 125 56.18 -144.40 REMARK 500 GLU A 147 -48.54 76.08 REMARK 500 ARG A 176 -31.81 69.60 REMARK 500 PHE A 196 30.86 -156.19 REMARK 500 LYS A 261 -71.53 -50.84 REMARK 500 ASP A 308 -135.64 81.80 REMARK 500 GLU A 342 -95.46 54.80 REMARK 500 LEU A 343 116.88 55.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 307 ASP A 308 128.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1346 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A1304 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SERINE 212 MUTATED TO ASPARTIC ACID DBREF 1VZO A -6 1 PDB 1VZO 1VZO -6 1 DBREF 1VZO A 2 348 UNP O75582 K6A5_HUMAN 2 348 SEQADV 1VZO ASP A 212 UNP 075582 SER 212 ENGINEERED MUTATION SEQRES 1 A 355 MET ALA HIS HIS HIS HIS HIS HIS GLU GLU GLU GLY GLY SEQRES 2 A 355 SER SER GLY GLY ALA ALA GLY THR SER ALA ASP GLY GLY SEQRES 3 A 355 ASP GLY GLY GLU GLN LEU LEU THR VAL LYS HIS GLU LEU SEQRES 4 A 355 ARG THR ALA ASN LEU THR GLY HIS ALA GLU LYS VAL GLY SEQRES 5 A 355 ILE GLU ASN PHE GLU LEU LEU LYS VAL LEU GLY THR GLY SEQRES 6 A 355 ALA TYR GLY LYS VAL PHE LEU VAL ARG LYS ILE SER GLY SEQRES 7 A 355 HIS ASP THR GLY LYS LEU TYR ALA MET LYS VAL LEU LYS SEQRES 8 A 355 LYS ALA THR ILE VAL GLN LYS ALA LYS THR THR GLU HIS SEQRES 9 A 355 THR ARG THR GLU ARG GLN VAL LEU GLU HIS ILE ARG GLN SEQRES 10 A 355 SER PRO PHE LEU VAL THR LEU HIS TYR ALA PHE GLN THR SEQRES 11 A 355 GLU THR LYS LEU HIS LEU ILE LEU ASP TYR ILE ASN GLY SEQRES 12 A 355 GLY GLU LEU PHE THR HIS LEU SER GLN ARG GLU ARG PHE SEQRES 13 A 355 THR GLU HIS GLU VAL GLN ILE TYR VAL GLY GLU ILE VAL SEQRES 14 A 355 LEU ALA LEU GLU HIS LEU HIS LYS LEU GLY ILE ILE TYR SEQRES 15 A 355 ARG ASP ILE LYS LEU GLU ASN ILE LEU LEU ASP SER ASN SEQRES 16 A 355 GLY HIS VAL VAL LEU THR ASP PHE GLY LEU SER LYS GLU SEQRES 17 A 355 PHE VAL ALA ASP GLU THR GLU ARG ALA TYR ASP PHE CYS SEQRES 18 A 355 GLY THR ILE GLU TYR MET ALA PRO ASP ILE VAL ARG GLY SEQRES 19 A 355 GLY ASP SER GLY HIS ASP LYS ALA VAL ASP TRP TRP SER SEQRES 20 A 355 LEU GLY VAL LEU MET TYR GLU LEU LEU THR GLY ALA SER SEQRES 21 A 355 PRO PHE THR VAL ASP GLY GLU LYS ASN SER GLN ALA GLU SEQRES 22 A 355 ILE SER ARG ARG ILE LEU LYS SER GLU PRO PRO TYR PRO SEQRES 23 A 355 GLN GLU MET SER ALA LEU ALA LYS ASP LEU ILE GLN ARG SEQRES 24 A 355 LEU LEU MET LYS ASP PRO LYS LYS ARG LEU GLY CYS GLY SEQRES 25 A 355 PRO ARG ASP ALA ASP GLU ILE LYS GLU HIS LEU PHE PHE SEQRES 26 A 355 GLN LYS ILE ASN TRP ASP ASP LEU ALA ALA LYS LYS VAL SEQRES 27 A 355 PRO ALA PRO PHE LYS PRO VAL ILE ARG ASP GLU LEU ASP SEQRES 28 A 355 VAL SER ASN PHE HET BME A1304 4 HET SO4 A1346 5 HETNAM BME BETA-MERCAPTOETHANOL HETNAM SO4 SULFATE ION FORMUL 2 BME C2 H6 O S FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *182(H2 O) HELIX 1 1 GLY A 45 GLU A 47 5 3 HELIX 2 2 THR A 94 THR A 98 5 5 HELIX 3 3 THR A 100 GLN A 110 1 11 HELIX 4 4 GLU A 138 GLU A 147 1 10 HELIX 5 5 THR A 150 LEU A 171 1 22 HELIX 6 6 LYS A 179 GLU A 181 5 3 HELIX 7 7 VAL A 203 GLY A 215 5 13 HELIX 8 8 ALA A 221 ARG A 226 1 6 HELIX 9 9 LYS A 234 GLY A 251 1 18 HELIX 10 10 SER A 263 SER A 274 1 12 HELIX 11 11 SER A 283 LEU A 294 1 12 HELIX 12 12 ASP A 297 ARG A 301 5 5 HELIX 13 13 ASP A 308 GLU A 314 1 7 HELIX 14 14 HIS A 315 GLN A 319 5 5 HELIX 15 15 ASN A 322 ALA A 328 1 7 SHEET 1 AA 3 LEU A 26 GLU A 31 0 SHEET 2 AA 3 LYS A 85 ALA A 92 -1 O ILE A 88 N HIS A 30 SHEET 3 AA 3 LEU A 198 GLU A 201 -1 O SER A 199 N THR A 87 SHEET 1 AB 6 ALA A 35 ASN A 36 0 SHEET 2 AB 6 LEU A 117 THR A 123 -1 O ALA A 120 N ALA A 35 SHEET 3 AB 6 LYS A 126 LEU A 131 -1 O LYS A 126 N THR A 123 SHEET 4 AB 6 LEU A 77 LEU A 83 -1 O ALA A 79 N LEU A 131 SHEET 5 AB 6 GLY A 61 LYS A 68 -1 O PHE A 64 N MET A 80 SHEET 6 AB 6 PHE A 49 THR A 57 -1 O GLU A 50 N ARG A 67 SHEET 1 AC 2 ILE A 183 LEU A 185 0 SHEET 2 AC 2 VAL A 191 LEU A 193 -1 O VAL A 192 N LEU A 184 SITE 1 AC1 4 ARG A 148 THR A 150 GLU A 151 HOH A2182 SITE 1 AC2 5 ASP A 233 LYS A 234 ALA A 235 CYS A 304 SITE 2 AC2 5 HOH A2154 CRYST1 66.629 73.772 89.118 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015008 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011221 0.00000