HEADER GLYCOPROTEIN 11-JUN-04 1W0S TITLE SOLUTION STRUCTURE OF TRIMERIC FORM OF PROPERDIN BY X-RAY TITLE 2 SOLUTION SCATTERING AND ANALYTICAL ULTRACENTRIFUGATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROPERDIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 28-469; COMPND 5 SYNONYM: FACTOR P SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS X-RAY SCATTERING, ANALYTICAL ULTRACENTRIFUGATION, KEYWDS 2 COMPLEMENT, THROMBOSPONDIN TYPE I REPEATS, CONSTRAINED KEYWDS 3 MODELLING, GLYCOPROTEIN EXPDTA SOLUTION SCATTERING MDLTYP CA ATOMS ONLY, CHAIN A, B, C AUTHOR Z.SUN,K.B.M.REID,S.J.PERKINS REVDAT 3 07-APR-10 1W0S 1 VERSN REVDAT 2 24-FEB-09 1W0S 1 VERSN REVDAT 1 06-JUL-05 1W0S 0 JRNL AUTH Z.SUN,K.B.M.REID,S.J.PERKINS JRNL TITL THE DIMERIC AND TRIMERIC SOLUTION STRUCTURES OF JRNL TITL 2 THE MULTIDOMAIN COMPLEMENT PROTEIN PROPERDIN BY X- JRNL TITL 3 RAY SCATTERING, ANALYTICAL ULTRACENTRIFUGATION AND JRNL TITL 4 CONSTRAINED MODELLING. JRNL REF J.MOL.BIOL. V. 343 1327 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15491616 JRNL DOI 10.1016/J.JMB.2004.09.001 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : INSIGHT II 98 REMARK 3 AUTHORS : MSI REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JRNL CITATION REMARK 4 REMARK 4 1W0S COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUN-04. REMARK 100 THE PDBE ID CODE IS EBI-20127. REMARK 265 REMARK 265 EXPERIMENTAL DETAILS REMARK 265 REMARK 265 EXPERIMENT TYPE : SMALL ANGLE X-RAY SCATTERING REMARK 265 DATA ACQUISITION REMARK 265 RADIATION/NEUTRON SOURCE : ESRF BEAMLINE ID02 REMARK 265 SYNCHROTRON (Y/N) : Y REMARK 265 BEAMLINE TYPE : NULL REMARK 265 BEAMLINE INSTRUMENT : NULL REMARK 265 DETECTOR TYPE : FRELON CCD CAMERA REMARK 265 DETECTOR MANUFACTURER DETAILS : NULL REMARK 265 TEMPERATURE (KELVIN) : 288 REMARK 265 PH : 7.4 REMARK 265 NUMBER OF TIME FRAMES USED : 10 REMARK 265 PROTEIN CONCENTRATION RANGE (MG/ML) : 0.25-1.00 REMARK 265 SAMPLE BUFFER : 140 MM NACL, REMARK 265 10 MM TRIS.HCL REMARK 265 DATA REDUCTION SOFTWARE : MULTICCD REMARK 265 GUINIER MEAN RADIUS OF GYRATION (NM) : 10.34 REMARK 265 SIGMA MEAN RADIUS OF GYRATION : 0.36 REMARK 265 R(XS-1) MEAN CROSS SECTIONAL RADII (NM) : 1.51 REMARK 265 R(XS-1) SIGMA MEAN CROSS SECTIONAL RADII : 0.20 REMARK 265 R(XS-2) MEAN CROSS SECTIONAL RADII (NM) : NULL REMARK 265 R(XS-2) SIGMA MEAN CROSS SECTIONAL RADII : NULL REMARK 265 P(R) PROTEIN LENGTH (NM) : 30 REMARK 265 REMARK 265 DATA ANALYSIS AND MODEL FITTING: REMARK 265 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 265 SOFTWARE USED : INSIGHT II, SCTPL7, GNOM REMARK 265 SOFTWARE AUTHORS : MSI REMARK 265 STARTING MODEL : NULL REMARK 265 REMARK 265 CONFORMERS, NUMBER CALCULATED : NULL REMARK 265 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 265 CONFORMERS, SELECTION CRITERIA : NULL REMARK 265 REMARK 265 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 265 REMARK 265 OTHER DETAILS: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 POSITIVELY REGULATES THE ALTERNATE PATHWAY OF COMPLEMENT REMARK 400 BY BINDING AND STABILIZING THE C3- AND C5-CONVERTASE REMARK 400 ENZYME COMPLEXES. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W0R RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF DIMERIC FORM OF PROPERDIN BY X-RAY REMARK 900 SOLUTION SCATTERING AND ANALYTICAL ULTRACENTRIFUGATION DBREF 1W0S A 1 442 UNP P27918 PROP_HUMAN 28 469 DBREF 1W0S B 1 442 UNP P27918 PROP_HUMAN 28 469 DBREF 1W0S C 1 442 UNP P27918 PROP_HUMAN 28 469 SEQRES 1 A 442 ASP PRO VAL LEU CYS PHE THR GLN TYR GLU GLU SER SER SEQRES 2 A 442 GLY LYS CYS LYS GLY LEU LEU GLY GLY GLY VAL SER VAL SEQRES 3 A 442 GLU ASP CYS CYS LEU ASN THR ALA PHE ALA TYR GLN LYS SEQRES 4 A 442 ARG SER GLY GLY LEU CYS GLN PRO CYS ARG SER PRO ARG SEQRES 5 A 442 TRP SER LEU TRP SER THR TRP ALA PRO CYS SER VAL THR SEQRES 6 A 442 CYS SER GLU GLY SER GLN LEU ARG TYR ARG ARG CYS VAL SEQRES 7 A 442 GLY TRP ASN GLY GLN CYS SER GLY LYS VAL ALA PRO GLY SEQRES 8 A 442 THR LEU GLU TRP GLN LEU GLN ALA CYS GLU ASP GLN GLN SEQRES 9 A 442 CYS CYS PRO GLU MET GLY GLY TRP SER GLY TRP GLY PRO SEQRES 10 A 442 TRP GLU PRO CYS SER VAL THR CYS SER LYS GLY THR ARG SEQRES 11 A 442 THR ARG ARG ARG ALA CYS ASN HIS PRO ALA PRO LYS CYS SEQRES 12 A 442 GLY GLY HIS CYS PRO GLY GLN ALA GLN GLU SER GLU ALA SEQRES 13 A 442 CYS ASP THR GLN GLN VAL CYS PRO THR HIS GLY ALA TRP SEQRES 14 A 442 ALA THR TRP GLY PRO TRP THR PRO CYS SER ALA SER CYS SEQRES 15 A 442 HIS GLY GLY PRO HIS GLU PRO LYS GLU THR ARG SER ARG SEQRES 16 A 442 LYS CYS SER ALA PRO GLU PRO SER GLN LYS PRO PRO GLY SEQRES 17 A 442 LYS PRO CYS PRO GLY LEU ALA TYR GLU GLN ARG ARG CYS SEQRES 18 A 442 THR GLY LEU PRO PRO CYS PRO VAL ALA GLY GLY TRP GLY SEQRES 19 A 442 PRO TRP GLY PRO VAL SER PRO CYS PRO VAL THR CYS GLY SEQRES 20 A 442 LEU GLY GLN THR MET GLU GLN ARG THR CYS ASN HIS PRO SEQRES 21 A 442 VAL PRO GLN HIS GLY GLY PRO PHE CYS ALA GLY ASP ALA SEQRES 22 A 442 THR ARG THR HIS ILE CYS ASN THR ALA VAL PRO CYS PRO SEQRES 23 A 442 VAL ASP GLY GLU TRP ASP SER TRP GLY GLU TRP SER PRO SEQRES 24 A 442 CYS ILE ARG ARG ASN MET LYS SER ILE SER CYS GLN GLU SEQRES 25 A 442 ILE PRO GLY GLN GLN SER ARG GLY ARG THR CYS ARG GLY SEQRES 26 A 442 ARG LYS PHE ASP GLY HIS ARG CYS ALA GLY GLN GLN GLN SEQRES 27 A 442 ASP ILE ARG HIS CYS TYR SER ILE GLN HIS CYS PRO LEU SEQRES 28 A 442 LYS GLY SER TRP SER GLU TRP SER THR TRP GLY LEU CYS SEQRES 29 A 442 MET PRO PRO CYS GLY PRO ASN PRO THR ARG ALA ARG GLN SEQRES 30 A 442 ARG LEU CYS THR PRO LEU LEU PRO LYS TYR PRO PRO THR SEQRES 31 A 442 VAL SER MET VAL GLU GLY GLN GLY GLU LYS ASN VAL THR SEQRES 32 A 442 PHE TRP GLY ARG PRO LEU PRO ARG CYS GLU GLU LEU GLN SEQRES 33 A 442 GLY GLN LYS LEU VAL VAL GLU GLU LYS ARG PRO CYS LEU SEQRES 34 A 442 HIS VAL PRO ALA CYS LYS ASP PRO GLU GLU GLU GLU LEU SEQRES 1 B 442 ASP PRO VAL LEU CYS PHE THR GLN TYR GLU GLU SER SER SEQRES 2 B 442 GLY LYS CYS LYS GLY LEU LEU GLY GLY GLY VAL SER VAL SEQRES 3 B 442 GLU ASP CYS CYS LEU ASN THR ALA PHE ALA TYR GLN LYS SEQRES 4 B 442 ARG SER GLY GLY LEU CYS GLN PRO CYS ARG SER PRO ARG SEQRES 5 B 442 TRP SER LEU TRP SER THR TRP ALA PRO CYS SER VAL THR SEQRES 6 B 442 CYS SER GLU GLY SER GLN LEU ARG TYR ARG ARG CYS VAL SEQRES 7 B 442 GLY TRP ASN GLY GLN CYS SER GLY LYS VAL ALA PRO GLY SEQRES 8 B 442 THR LEU GLU TRP GLN LEU GLN ALA CYS GLU ASP GLN GLN SEQRES 9 B 442 CYS CYS PRO GLU MET GLY GLY TRP SER GLY TRP GLY PRO SEQRES 10 B 442 TRP GLU PRO CYS SER VAL THR CYS SER LYS GLY THR ARG SEQRES 11 B 442 THR ARG ARG ARG ALA CYS ASN HIS PRO ALA PRO LYS CYS SEQRES 12 B 442 GLY GLY HIS CYS PRO GLY GLN ALA GLN GLU SER GLU ALA SEQRES 13 B 442 CYS ASP THR GLN GLN VAL CYS PRO THR HIS GLY ALA TRP SEQRES 14 B 442 ALA THR TRP GLY PRO TRP THR PRO CYS SER ALA SER CYS SEQRES 15 B 442 HIS GLY GLY PRO HIS GLU PRO LYS GLU THR ARG SER ARG SEQRES 16 B 442 LYS CYS SER ALA PRO GLU PRO SER GLN LYS PRO PRO GLY SEQRES 17 B 442 LYS PRO CYS PRO GLY LEU ALA TYR GLU GLN ARG ARG CYS SEQRES 18 B 442 THR GLY LEU PRO PRO CYS PRO VAL ALA GLY GLY TRP GLY SEQRES 19 B 442 PRO TRP GLY PRO VAL SER PRO CYS PRO VAL THR CYS GLY SEQRES 20 B 442 LEU GLY GLN THR MET GLU GLN ARG THR CYS ASN HIS PRO SEQRES 21 B 442 VAL PRO GLN HIS GLY GLY PRO PHE CYS ALA GLY ASP ALA SEQRES 22 B 442 THR ARG THR HIS ILE CYS ASN THR ALA VAL PRO CYS PRO SEQRES 23 B 442 VAL ASP GLY GLU TRP ASP SER TRP GLY GLU TRP SER PRO SEQRES 24 B 442 CYS ILE ARG ARG ASN MET LYS SER ILE SER CYS GLN GLU SEQRES 25 B 442 ILE PRO GLY GLN GLN SER ARG GLY ARG THR CYS ARG GLY SEQRES 26 B 442 ARG LYS PHE ASP GLY HIS ARG CYS ALA GLY GLN GLN GLN SEQRES 27 B 442 ASP ILE ARG HIS CYS TYR SER ILE GLN HIS CYS PRO LEU SEQRES 28 B 442 LYS GLY SER TRP SER GLU TRP SER THR TRP GLY LEU CYS SEQRES 29 B 442 MET PRO PRO CYS GLY PRO ASN PRO THR ARG ALA ARG GLN SEQRES 30 B 442 ARG LEU CYS THR PRO LEU LEU PRO LYS TYR PRO PRO THR SEQRES 31 B 442 VAL SER MET VAL GLU GLY GLN GLY GLU LYS ASN VAL THR SEQRES 32 B 442 PHE TRP GLY ARG PRO LEU PRO ARG CYS GLU GLU LEU GLN SEQRES 33 B 442 GLY GLN LYS LEU VAL VAL GLU GLU LYS ARG PRO CYS LEU SEQRES 34 B 442 HIS VAL PRO ALA CYS LYS ASP PRO GLU GLU GLU GLU LEU SEQRES 1 C 442 ASP PRO VAL LEU CYS PHE THR GLN TYR GLU GLU SER SER SEQRES 2 C 442 GLY LYS CYS LYS GLY LEU LEU GLY GLY GLY VAL SER VAL SEQRES 3 C 442 GLU ASP CYS CYS LEU ASN THR ALA PHE ALA TYR GLN LYS SEQRES 4 C 442 ARG SER GLY GLY LEU CYS GLN PRO CYS ARG SER PRO ARG SEQRES 5 C 442 TRP SER LEU TRP SER THR TRP ALA PRO CYS SER VAL THR SEQRES 6 C 442 CYS SER GLU GLY SER GLN LEU ARG TYR ARG ARG CYS VAL SEQRES 7 C 442 GLY TRP ASN GLY GLN CYS SER GLY LYS VAL ALA PRO GLY SEQRES 8 C 442 THR LEU GLU TRP GLN LEU GLN ALA CYS GLU ASP GLN GLN SEQRES 9 C 442 CYS CYS PRO GLU MET GLY GLY TRP SER GLY TRP GLY PRO SEQRES 10 C 442 TRP GLU PRO CYS SER VAL THR CYS SER LYS GLY THR ARG SEQRES 11 C 442 THR ARG ARG ARG ALA CYS ASN HIS PRO ALA PRO LYS CYS SEQRES 12 C 442 GLY GLY HIS CYS PRO GLY GLN ALA GLN GLU SER GLU ALA SEQRES 13 C 442 CYS ASP THR GLN GLN VAL CYS PRO THR HIS GLY ALA TRP SEQRES 14 C 442 ALA THR TRP GLY PRO TRP THR PRO CYS SER ALA SER CYS SEQRES 15 C 442 HIS GLY GLY PRO HIS GLU PRO LYS GLU THR ARG SER ARG SEQRES 16 C 442 LYS CYS SER ALA PRO GLU PRO SER GLN LYS PRO PRO GLY SEQRES 17 C 442 LYS PRO CYS PRO GLY LEU ALA TYR GLU GLN ARG ARG CYS SEQRES 18 C 442 THR GLY LEU PRO PRO CYS PRO VAL ALA GLY GLY TRP GLY SEQRES 19 C 442 PRO TRP GLY PRO VAL SER PRO CYS PRO VAL THR CYS GLY SEQRES 20 C 442 LEU GLY GLN THR MET GLU GLN ARG THR CYS ASN HIS PRO SEQRES 21 C 442 VAL PRO GLN HIS GLY GLY PRO PHE CYS ALA GLY ASP ALA SEQRES 22 C 442 THR ARG THR HIS ILE CYS ASN THR ALA VAL PRO CYS PRO SEQRES 23 C 442 VAL ASP GLY GLU TRP ASP SER TRP GLY GLU TRP SER PRO SEQRES 24 C 442 CYS ILE ARG ARG ASN MET LYS SER ILE SER CYS GLN GLU SEQRES 25 C 442 ILE PRO GLY GLN GLN SER ARG GLY ARG THR CYS ARG GLY SEQRES 26 C 442 ARG LYS PHE ASP GLY HIS ARG CYS ALA GLY GLN GLN GLN SEQRES 27 C 442 ASP ILE ARG HIS CYS TYR SER ILE GLN HIS CYS PRO LEU SEQRES 28 C 442 LYS GLY SER TRP SER GLU TRP SER THR TRP GLY LEU CYS SEQRES 29 C 442 MET PRO PRO CYS GLY PRO ASN PRO THR ARG ALA ARG GLN SEQRES 30 C 442 ARG LEU CYS THR PRO LEU LEU PRO LYS TYR PRO PRO THR SEQRES 31 C 442 VAL SER MET VAL GLU GLY GLN GLY GLU LYS ASN VAL THR SEQRES 32 C 442 PHE TRP GLY ARG PRO LEU PRO ARG CYS GLU GLU LEU GLN SEQRES 33 C 442 GLY GLN LYS LEU VAL VAL GLU GLU LYS ARG PRO CYS LEU SEQRES 34 C 442 HIS VAL PRO ALA CYS LYS ASP PRO GLU GLU GLU GLU LEU CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000