HEADER TRANSFERASE 21-JUN-04 1W1G TITLE CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) TITLE 2 DOMAIN BOUND TO DIC4-PHOSPHATIDYLINOSITOL (3,4,5)- TITLE 3 TRISPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PLECKSTRIN HOMOLOGY DOMAIN, RESIDUES 409-556; COMPND 5 SYNONYM: HPDK1; COMPND 6 EC: 2.7.1.37; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS TRANSFERASE, PDK1, PHOSPHOINOSITIDE DEPENDENT PROTEIN KEYWDS 2 KINASE 1, PKB, PLECKSTRIN HOMOLOGY DOMAIN, INOSITOL KEYWDS 3 PHOSPHATE, PHOSPHOINOSITIDE, SIGNAL TRANSDUCTION, KEYWDS 4 PI3-KINASE, PIP3 SERINE/THREONINE PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KOMANDER,M.DEAK,D.R.ALESSI,D.M.F.VAN AALTEN REVDAT 2 24-FEB-09 1W1G 1 VERSN REVDAT 1 19-NOV-04 1W1G 0 JRNL AUTH D.KOMANDER,A.FAIRSERVICE,M.DEAK,G.S.KULAR, JRNL AUTH 2 A.R.PRESCOTT,C.P.DOWNES,S.T.SAFRANY,D.R.ALESSI, JRNL AUTH 3 D.M.F.VAN AALTEN JRNL TITL STRUCTURAL INSIGHTS INTO THE REGULATION OF PDK1 BY JRNL TITL 2 PHOSPHOINOSITIDES AND INOSITOL PHOSPHATES JRNL REF EMBO J. V. 23 3918 2004 JRNL REFN ISSN 0261-4189 JRNL PMID 15457207 JRNL DOI 10.1038/SJ.EMBOJ.7600379 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 545 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1834 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1206 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.58000 REMARK 3 B22 (A**2) : -0.83000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.471 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1273 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1115 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1731 ; 1.703 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2588 ; 0.860 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 142 ; 6.622 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;34.693 ;23.731 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 219 ;13.710 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.708 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 184 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1363 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 263 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 267 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1116 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 613 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 672 ; 0.107 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 117 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.166 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.240 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.274 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 746 ; 1.727 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 287 ; 0.745 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1168 ; 2.305 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 612 ; 3.614 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 563 ; 4.923 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 414 A 466 REMARK 3 RESIDUE RANGE : A 472 A 487 REMARK 3 RESIDUE RANGE : A 494 A 543 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5388 27.1746 24.0723 REMARK 3 T TENSOR REMARK 3 T11: -0.0377 T22: 0.0133 REMARK 3 T33: -0.0088 T12: -0.0001 REMARK 3 T13: -0.0004 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.1679 L22: 1.4071 REMARK 3 L33: 0.4956 L12: 0.1263 REMARK 3 L13: -0.1429 L23: -0.5604 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: -0.0141 S13: 0.0265 REMARK 3 S21: -0.0763 S22: 0.0301 S23: -0.0092 REMARK 3 S31: 0.0443 S32: -0.0069 S33: -0.0288 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 408 A 413 REMARK 3 RESIDUE RANGE : A 466 A 471 REMARK 3 RESIDUE RANGE : A 544 A 549 REMARK 3 RESIDUE RANGE : A 488 A 493 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5684 26.7739 22.8190 REMARK 3 T TENSOR REMARK 3 T11: -0.0232 T22: -0.0096 REMARK 3 T33: -0.0304 T12: -0.0101 REMARK 3 T13: -0.0146 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 0.4742 L22: 1.4621 REMARK 3 L33: 0.4845 L12: 0.2713 REMARK 3 L13: -0.2195 L23: -0.8330 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: 0.0203 S13: 0.0334 REMARK 3 S21: -0.0906 S22: 0.0671 S23: 0.0777 REMARK 3 S31: 0.0498 S32: 0.0051 S33: -0.0950 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. THE SIDE CHAINS OF SOME DISORDERED RESIDUES REMARK 3 WERE REFINED EITHER WITH THE OCCUPANCY SET TO 0.02, OR THE REMARK 3 RESIDUE WAS MUTATED TO ALA. THE ACYL-CHAINS OF THE LIGAND WERE REMARK 3 NOT MODELLED DUE TO DISORDER. REMARK 4 REMARK 4 1W1G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-04. REMARK 100 THE PDBE ID CODE IS EBI-20199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.20 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE (RAXIS 4) REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25810 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDK1PH INSP4 MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 0.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.1 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG 4000, 0.1 M SODIUM REMARK 280 ACETATE [PH 4.2], 0.3 M AMMONIUM ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.47150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 406 REMARK 465 PRO A 551 REMARK 465 ASP A 552 REMARK 465 ALA A 553 REMARK 465 ALA A 554 REMARK 465 VAL A 555 REMARK 465 GLN A 556 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 408 CG CD1 CD2 REMARK 470 GLU A 503 CG CD OE1 OE2 REMARK 470 LYS A 509 CG CD CE NZ REMARK 470 HIS A 550 CA C O CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 429 - O HOH A 2041 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 464 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 411 64.84 39.46 REMARK 500 PHE A 470 -137.16 -121.79 REMARK 500 ASN A 510 -154.91 -160.56 REMARK 500 GLN A 548 -163.18 -119.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 4PT A 1550 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4PT A1550 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H1W RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURE OF THE REMARK 900 HUMAN PDK1 CATALYTIC DOMAIN REMARK 900 RELATED ID: 1OKY RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN REMARK 900 COMPLEX WITH STAUROSPORINE REMARK 900 RELATED ID: 1OKZ RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN REMARK 900 COMPLEX WITH UCN-01 REMARK 900 RELATED ID: 1UU3 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN REMARK 900 COMPLEX WITH LY333531 REMARK 900 RELATED ID: 1UU7 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN REMARK 900 COMPLEX WITH BIM-2 REMARK 900 RELATED ID: 1UU8 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN REMARK 900 COMPLEX WITH BIM-1 REMARK 900 RELATED ID: 1UU9 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN REMARK 900 COMPLEX WITH BIM-3 REMARK 900 RELATED ID: 1UVR RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN REMARK 900 COMPLEX WITH BIM-8 REMARK 900 RELATED ID: 1W1D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN REMARK 900 HOMOLOGY (PH) DOMAIN BOUND TO INOSITOL (1, REMARK 900 3,4,5)-TETRAKISPHOSPHATE REMARK 900 RELATED ID: 1W1H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN REMARK 900 HOMOLOGY (PH) DOMAIN DBREF 1W1G A 406 408 PDB 1W1G 1W1G 406 408 DBREF 1W1G A 409 556 UNP O15530 PDPK_HUMAN 409 556 SEQRES 1 A 151 GLY PRO LEU GLY SER ASN ILE GLU GLN TYR ILE HIS ASP SEQRES 2 A 151 LEU ASP SER ASN SER PHE GLU LEU ASP LEU GLN PHE SER SEQRES 3 A 151 GLU ASP GLU LYS ARG LEU LEU LEU GLU LYS GLN ALA GLY SEQRES 4 A 151 GLY ASN PRO TRP HIS GLN PHE VAL GLU ASN ASN LEU ILE SEQRES 5 A 151 LEU LYS MET GLY PRO VAL ASP LYS ARG LYS GLY LEU PHE SEQRES 6 A 151 ALA ARG ARG ARG GLN LEU LEU LEU THR GLU GLY PRO HIS SEQRES 7 A 151 LEU TYR TYR VAL ASP PRO VAL ASN LYS VAL LEU LYS GLY SEQRES 8 A 151 GLU ILE PRO TRP SER GLN GLU LEU ARG PRO GLU ALA LYS SEQRES 9 A 151 ASN PHE LYS THR PHE PHE VAL HIS THR PRO ASN ARG THR SEQRES 10 A 151 TYR TYR LEU MET ASP PRO SER GLY ASN ALA HIS LYS TRP SEQRES 11 A 151 CYS ARG LYS ILE GLN GLU VAL TRP ARG GLN ARG TYR GLN SEQRES 12 A 151 SER HIS PRO ASP ALA ALA VAL GLN HET 4PT A1550 33 HETNAM 4PT (2R)-3-{[(S)-{[(2S,3R,5S,6S)-2,6-DIHYDROXY-3, HETNAM 2 4PT 4,5-TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY} HETNAM 3 4PT (HYDROXY)PHOSPHORYL]OXY}-2-(1-HYDROXYBUTOXY)PROPYL HETNAM 4 4PT BUTYRATE HETSYN 4PT DIC4-PHOSPHATIDYLINOSITOL(3,4,5)TRISPHOSPHATE FORMUL 2 4PT C17 H36 O22 P4 FORMUL 3 HOH *163(H2 O1) HELIX 1 1 ASN A 411 GLN A 414 5 4 HELIX 2 2 SER A 431 ASN A 446 1 16 HELIX 3 3 TRP A 448 VAL A 452 5 5 HELIX 4 4 ASN A 531 GLN A 548 1 18 SHEET 1 AA 6 ILE A 416 ASP A 420 0 SHEET 2 AA 6 SER A 423 LEU A 426 -1 O SER A 423 N LEU A 419 SHEET 3 AA 6 ILE A 457 LYS A 467 -1 O LEU A 458 N LEU A 426 SHEET 4 AA 6 PHE A 470 THR A 479 -1 O PHE A 470 N LYS A 467 SHEET 5 AA 6 HIS A 483 ASP A 488 -1 O HIS A 483 N THR A 479 SHEET 6 AA 6 VAL A 493 ILE A 498 -1 O VAL A 493 N ASP A 488 SHEET 1 AB 6 ILE A 416 ASP A 420 0 SHEET 2 AB 6 SER A 423 LEU A 426 -1 O SER A 423 N LEU A 419 SHEET 3 AB 6 ILE A 457 LYS A 467 -1 O LEU A 458 N LEU A 426 SHEET 4 AB 6 ARG A 521 MET A 526 -1 O TYR A 524 N ARG A 466 SHEET 5 AB 6 THR A 513 THR A 518 -1 O PHE A 514 N LEU A 525 SHEET 6 AB 6 ARG A 505 ALA A 508 -1 O ARG A 505 N HIS A 517 CISPEP 1 GLY A 481 PRO A 482 0 -0.22 SITE 1 AC1 14 HIS A 417 LEU A 419 LYS A 465 LYS A 467 SITE 2 AC1 14 ARG A 472 ARG A 474 TYR A 486 LYS A 495 SITE 3 AC1 14 ARG A 521 HOH A2029 HOH A2084 HOH A2155 SITE 4 AC1 14 HOH A2156 HOH A2157 CRYST1 35.264 58.943 36.440 90.00 102.33 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028357 0.000000 0.006201 0.00000 SCALE2 0.000000 0.016966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028091 0.00000