HEADER TRANSFERASE 01-JUL-04 1W2F TITLE HUMAN INOSITOL (1,4,5)-TRISPHOSPHATE 3-KINASE SUBSTITUTED TITLE 2 WITH SELENOMETHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL-TRISPHOSPHATE 3-KINASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 186-461; COMPND 5 SYNONYM: INOSITOL 1,4,5-TRISPHOSPHATE 3-KINASE, IP3-3K; COMPND 6 EC: 2.1.7.127; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: POPTG KEYWDS INOSITOL PHOSPHATE KINASE, TRANSFERASE, CALMODULIN-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR B.GONZALEZ,M.J.SCHELL,R.F.IRVINE,R.L.WILLIAMS REVDAT 3 13-JUL-11 1W2F 1 VERSN REVDAT 2 24-FEB-09 1W2F 1 VERSN REVDAT 1 09-SEP-04 1W2F 0 JRNL AUTH B.GONZALEZ,M.J.SCHELL,A.J.LETCHER,D.B.VEPRINTSEV,R.F.IRVINE, JRNL AUTH 2 R.L.WILLIAMS JRNL TITL STRUCTURE OF A HUMAN INOSITOL 1,4,5-TRISPHOSPHATE 3-KINASE; JRNL TITL 2 SUBSTRATE BINDING REVEALS WHY IT IS NOT A PHOSPHOINOSITIDE JRNL TITL 3 3-KINASE JRNL REF MOL.CELL V. 15 689 2004 JRNL REFN ISSN 1097-2765 JRNL PMID 15350214 JRNL DOI 10.1016/J.MOLCEL.2004.08.004 REMARK 2 REMARK 2 RESOLUTION. 1.8 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 48647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2576 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2918 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4309 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 265 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : -1.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.934 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4511 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4135 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6081 ; 1.655 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9589 ; 0.833 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 549 ; 6.589 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 650 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4997 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 977 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1481 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6408 ; 0.264 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3447 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 433 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 96 ; 0.256 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.221 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 192 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5440 25.9160 77.1190 REMARK 3 T TENSOR REMARK 3 T11: 0.1768 T22: 0.0849 REMARK 3 T33: 0.1209 T12: 0.0194 REMARK 3 T13: -0.0278 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 1.1851 L22: 0.0333 REMARK 3 L33: 2.2605 L12: 0.0513 REMARK 3 L13: 0.0507 L23: -0.0581 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: -0.0755 S13: 0.1213 REMARK 3 S21: 0.0732 S22: -0.0230 S23: -0.0757 REMARK 3 S31: -0.3298 S32: 0.1217 S33: 0.0349 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 257 A 268 REMARK 3 RESIDUE RANGE : A 324 A 461 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1390 16.4210 68.8770 REMARK 3 T TENSOR REMARK 3 T11: 0.1048 T22: 0.1042 REMARK 3 T33: 0.1152 T12: 0.0428 REMARK 3 T13: 0.0150 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.7710 L22: 0.4836 REMARK 3 L33: 0.4891 L12: -0.1801 REMARK 3 L13: -0.3002 L23: 0.1642 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: 0.0498 S13: -0.0130 REMARK 3 S21: 0.0463 S22: -0.0845 S23: 0.0263 REMARK 3 S31: 0.0019 S32: -0.0919 S33: 0.0492 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 269 A 323 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1430 27.6590 84.3110 REMARK 3 T TENSOR REMARK 3 T11: 0.1079 T22: 0.1310 REMARK 3 T33: 0.0849 T12: 0.0298 REMARK 3 T13: 0.0565 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.5740 L22: 0.6751 REMARK 3 L33: 0.3057 L12: -0.2171 REMARK 3 L13: -0.2751 L23: 0.1541 REMARK 3 S TENSOR REMARK 3 S11: 0.0335 S12: 0.0193 S13: 0.0620 REMARK 3 S21: 0.0817 S22: -0.0036 S23: 0.0273 REMARK 3 S31: -0.0048 S32: 0.0420 S33: -0.0299 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 192 B 256 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7460 58.5650 73.0950 REMARK 3 T TENSOR REMARK 3 T11: 0.1168 T22: 0.2091 REMARK 3 T33: 0.0994 T12: 0.0519 REMARK 3 T13: -0.0509 T23: -0.0531 REMARK 3 L TENSOR REMARK 3 L11: 0.9919 L22: 1.5542 REMARK 3 L33: 1.4735 L12: 0.7387 REMARK 3 L13: -0.4497 L23: 0.0300 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: -0.2043 S13: -0.0008 REMARK 3 S21: 0.2905 S22: 0.0476 S23: -0.1293 REMARK 3 S31: -0.0406 S32: 0.3971 S33: -0.0746 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 257 B 268 REMARK 3 RESIDUE RANGE : B 324 B 461 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5820 50.5440 57.8180 REMARK 3 T TENSOR REMARK 3 T11: 0.0976 T22: 0.1045 REMARK 3 T33: 0.1162 T12: 0.0481 REMARK 3 T13: 0.0167 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.2675 L22: 0.6393 REMARK 3 L33: 0.9820 L12: 0.0508 REMARK 3 L13: -0.1950 L23: -0.0117 REMARK 3 S TENSOR REMARK 3 S11: -0.1007 S12: 0.0177 S13: 0.0376 REMARK 3 S21: 0.0353 S22: 0.0943 S23: 0.0361 REMARK 3 S31: 0.0841 S32: 0.1323 S33: 0.0064 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 269 B 323 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8230 45.2270 50.5030 REMARK 3 T TENSOR REMARK 3 T11: 0.0488 T22: 0.2436 REMARK 3 T33: 0.2242 T12: 0.0933 REMARK 3 T13: 0.0654 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 0.9612 L22: 2.7463 REMARK 3 L33: 0.8266 L12: 0.1632 REMARK 3 L13: -0.2270 L23: -0.3346 REMARK 3 S TENSOR REMARK 3 S11: -0.0882 S12: -0.1342 S13: -0.1301 REMARK 3 S21: -0.1478 S22: -0.1457 S23: -0.5032 REMARK 3 S31: 0.0906 S32: 0.3014 S33: 0.2339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 1W2F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-04. REMARK 100 THE PDBE ID CODE IS EBI-15272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53000 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 57.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 6.150 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8920 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.87 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.5 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.6 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9 M NA CITRATE, REMARK 280 0.1 M NACL, 0.1 M TRIS PH 8. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.17600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.17600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.89900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.89900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.17600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.89900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.17600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.89900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH B2063 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 193 REMARK 465 HIS B 194 REMARK 465 THR B 195 REMARK 465 GLY B 196 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2097 O HOH B 2098 3555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 259 CA - CB - SG ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 376 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 CYS B 218 CA - CB - SG ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG B 352 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 352 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 194 -105.36 -94.53 REMARK 500 PHE A 198 139.73 -29.61 REMARK 500 SER A 323 -169.80 -102.02 REMARK 500 ARG A 350 -47.16 -130.85 REMARK 500 ASP A 416 81.95 66.26 REMARK 500 PRO A 424 154.27 -49.30 REMARK 500 GLU A 437 126.17 -33.45 REMARK 500 ARG A 440 18.20 58.42 REMARK 500 GLU B 280 -81.39 -70.85 REMARK 500 ALA B 306 -83.84 -26.23 REMARK 500 PHE B 346 20.06 -140.36 REMARK 500 ARG B 350 -41.41 -130.20 REMARK 500 HIS B 408 9.15 80.14 REMARK 500 ASP B 416 80.18 72.28 REMARK 500 PRO B 424 152.09 -46.53 REMARK 500 ARG B 440 19.83 56.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1462 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1463 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1464 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1462 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W2C RELATED DB: PDB REMARK 900 HUMAN INOSITOL (1,4,5) TRISPHOSPHATE 3- REMARK 900 KINASE COMPLEXED WITH MN2+/AMPPNP/INS(1,4,5)P3 REMARK 900 RELATED ID: 1W2D RELATED DB: PDB REMARK 900 HUMAN INOSITOL (1,4,5)-TRISPHOSPHATE 3- REMARK 900 KINASE COMPLEXED WITH MN2+/ADP/INS(1,3,4,5)P4 DBREF 1W2F A 186 186 PDB 1W2F 1W2F 186 186 DBREF 1W2F B 186 186 PDB 1W2F 1W2F 186 186 DBREF 1W2F A 187 461 UNP P23677 IP3K_HUMAN 187 461 DBREF 1W2F B 187 461 UNP P23677 IP3K_HUMAN 187 461 SEQADV 1W2F SER A 187 UNP P23677 ALA 187 CONFLICT SEQADV 1W2F SER B 187 UNP P23677 ALA 187 CONFLICT SEQRES 1 A 276 MSE SER TRP VAL GLN LEU ALA GLY HIS THR GLY SER PHE SEQRES 2 A 276 LYS ALA ALA GLY THR SER GLY LEU ILE LEU LYS ARG CYS SEQRES 3 A 276 SER GLU PRO GLU ARG TYR CYS LEU ALA ARG LEU MSE ALA SEQRES 4 A 276 ASP ALA LEU ARG GLY CYS VAL PRO ALA PHE HIS GLY VAL SEQRES 5 A 276 VAL GLU ARG ASP GLY GLU SER TYR LEU GLN LEU GLN ASP SEQRES 6 A 276 LEU LEU ASP GLY PHE ASP GLY PRO CYS VAL LEU ASP CYS SEQRES 7 A 276 LYS MSE GLY VAL ARG THR TYR LEU GLU GLU GLU LEU THR SEQRES 8 A 276 LYS ALA ARG GLU ARG PRO LYS LEU ARG LYS ASP MSE TYR SEQRES 9 A 276 LYS LYS MSE LEU ALA VAL ASP PRO GLU ALA PRO THR GLU SEQRES 10 A 276 GLU GLU HIS ALA GLN ARG ALA VAL THR LYS PRO ARG TYR SEQRES 11 A 276 MSE GLN TRP ARG GLU GLY ILE SER SER SER THR THR LEU SEQRES 12 A 276 GLY PHE ARG ILE GLU GLY ILE LYS LYS ALA ASP GLY SER SEQRES 13 A 276 CYS SER THR ASP PHE LYS THR THR ARG SER ARG GLU GLN SEQRES 14 A 276 VAL LEU ARG VAL PHE GLU GLU PHE VAL GLN GLY ASP GLU SEQRES 15 A 276 GLU VAL LEU ARG ARG TYR LEU ASN ARG LEU GLN GLN ILE SEQRES 16 A 276 ARG ASP THR LEU GLU VAL SER GLU PHE PHE ARG ARG HIS SEQRES 17 A 276 GLU VAL ILE GLY SER SER LEU LEU PHE VAL HIS ASP HIS SEQRES 18 A 276 CYS HIS ARG ALA GLY VAL TRP LEU ILE ASP PHE GLY LYS SEQRES 19 A 276 THR THR PRO LEU PRO ASP GLY GLN ILE LEU ASP HIS ARG SEQRES 20 A 276 ARG PRO TRP GLU GLU GLY ASN ARG GLU ASP GLY TYR LEU SEQRES 21 A 276 LEU GLY LEU ASP ASN LEU ILE GLY ILE LEU ALA SER LEU SEQRES 22 A 276 ALA GLU ARG SEQRES 1 B 276 MSE SER TRP VAL GLN LEU ALA GLY HIS THR GLY SER PHE SEQRES 2 B 276 LYS ALA ALA GLY THR SER GLY LEU ILE LEU LYS ARG CYS SEQRES 3 B 276 SER GLU PRO GLU ARG TYR CYS LEU ALA ARG LEU MSE ALA SEQRES 4 B 276 ASP ALA LEU ARG GLY CYS VAL PRO ALA PHE HIS GLY VAL SEQRES 5 B 276 VAL GLU ARG ASP GLY GLU SER TYR LEU GLN LEU GLN ASP SEQRES 6 B 276 LEU LEU ASP GLY PHE ASP GLY PRO CYS VAL LEU ASP CYS SEQRES 7 B 276 LYS MSE GLY VAL ARG THR TYR LEU GLU GLU GLU LEU THR SEQRES 8 B 276 LYS ALA ARG GLU ARG PRO LYS LEU ARG LYS ASP MSE TYR SEQRES 9 B 276 LYS LYS MSE LEU ALA VAL ASP PRO GLU ALA PRO THR GLU SEQRES 10 B 276 GLU GLU HIS ALA GLN ARG ALA VAL THR LYS PRO ARG TYR SEQRES 11 B 276 MSE GLN TRP ARG GLU GLY ILE SER SER SER THR THR LEU SEQRES 12 B 276 GLY PHE ARG ILE GLU GLY ILE LYS LYS ALA ASP GLY SER SEQRES 13 B 276 CYS SER THR ASP PHE LYS THR THR ARG SER ARG GLU GLN SEQRES 14 B 276 VAL LEU ARG VAL PHE GLU GLU PHE VAL GLN GLY ASP GLU SEQRES 15 B 276 GLU VAL LEU ARG ARG TYR LEU ASN ARG LEU GLN GLN ILE SEQRES 16 B 276 ARG ASP THR LEU GLU VAL SER GLU PHE PHE ARG ARG HIS SEQRES 17 B 276 GLU VAL ILE GLY SER SER LEU LEU PHE VAL HIS ASP HIS SEQRES 18 B 276 CYS HIS ARG ALA GLY VAL TRP LEU ILE ASP PHE GLY LYS SEQRES 19 B 276 THR THR PRO LEU PRO ASP GLY GLN ILE LEU ASP HIS ARG SEQRES 20 B 276 ARG PRO TRP GLU GLU GLY ASN ARG GLU ASP GLY TYR LEU SEQRES 21 B 276 LEU GLY LEU ASP ASN LEU ILE GLY ILE LEU ALA SER LEU SEQRES 22 B 276 ALA GLU ARG MODRES 1W2F MSE A 186 MET SELENOMETHIONINE MODRES 1W2F MSE A 223 MET SELENOMETHIONINE MODRES 1W2F MSE A 265 MET SELENOMETHIONINE MODRES 1W2F MSE A 288 MET SELENOMETHIONINE MODRES 1W2F MSE A 292 MET SELENOMETHIONINE MODRES 1W2F MSE A 316 MET SELENOMETHIONINE MODRES 1W2F MSE B 186 MET SELENOMETHIONINE MODRES 1W2F MSE B 223 MET SELENOMETHIONINE MODRES 1W2F MSE B 265 MET SELENOMETHIONINE MODRES 1W2F MSE B 288 MET SELENOMETHIONINE MODRES 1W2F MSE B 292 MET SELENOMETHIONINE MODRES 1W2F MSE B 316 MET SELENOMETHIONINE HET MSE A 186 8 HET MSE A 223 8 HET MSE A 265 8 HET MSE A 288 8 HET MSE A 292 8 HET MSE A 316 8 HET MSE B 186 8 HET MSE B 223 8 HET MSE B 265 8 HET MSE B 288 8 HET MSE B 292 8 HET MSE B 316 8 HET SO4 A1462 5 HET SO4 A1463 5 HET SO4 A1464 5 HET SO4 B1462 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *265(H2 O) HELIX 1 1 SER A 187 GLY A 193 1 7 HELIX 2 2 SER A 212 ALA A 224 1 13 HELIX 3 3 ASP A 225 VAL A 231 5 7 HELIX 4 4 LEU A 271 ARG A 281 1 11 HELIX 5 5 LYS A 286 ASP A 296 1 11 HELIX 6 6 THR A 301 ARG A 308 1 8 HELIX 7 7 LYS A 312 SER A 323 1 12 HELIX 8 8 SER A 324 GLY A 329 1 6 HELIX 9 9 SER A 351 GLN A 364 1 14 HELIX 10 10 ASP A 366 SER A 387 1 22 HELIX 11 11 SER A 387 ARG A 392 1 6 HELIX 12 12 GLY A 443 GLU A 460 1 18 HELIX 13 13 SER B 187 ALA B 192 1 6 HELIX 14 14 SER B 212 ALA B 224 1 13 HELIX 15 15 ASP B 225 VAL B 231 5 7 HELIX 16 16 LEU B 271 ARG B 281 1 11 HELIX 17 17 LYS B 286 ASP B 296 1 11 HELIX 18 18 THR B 301 ARG B 308 1 8 HELIX 19 19 LYS B 312 SER B 323 1 12 HELIX 20 20 SER B 324 GLY B 329 1 6 HELIX 21 21 SER B 351 GLN B 364 1 14 HELIX 22 22 ASP B 366 SER B 387 1 22 HELIX 23 23 SER B 387 ARG B 392 1 6 HELIX 24 24 GLY B 443 GLU B 460 1 18 SHEET 1 AA 4 LYS A 199 ALA A 200 0 SHEET 2 AA 4 LEU A 206 ARG A 210 -1 O LEU A 208 N LYS A 199 SHEET 3 AA 4 GLU A 243 GLN A 249 -1 O LEU A 246 N LYS A 209 SHEET 4 AA 4 PHE A 234 ARG A 240 -1 N HIS A 235 O GLN A 247 SHEET 1 AB 5 CYS A 342 SER A 343 0 SHEET 2 AB 5 PHE A 330 LYS A 336 -1 O ILE A 335 N SER A 343 SHEET 3 AB 5 CYS A 259 MSE A 265 -1 O VAL A 260 N LYS A 336 SHEET 4 AB 5 SER A 399 HIS A 404 -1 O LEU A 400 N CYS A 263 SHEET 5 AB 5 ALA A 410 ILE A 415 -1 O GLY A 411 N VAL A 403 SHEET 1 AC 2 LEU A 284 ARG A 285 0 SHEET 2 AC 2 VAL A 310 THR A 311 -1 O VAL A 310 N ARG A 285 SHEET 1 AD 2 HIS A 393 ILE A 396 0 SHEET 2 AD 2 LYS A 419 PRO A 422 -1 O LYS A 419 N ILE A 396 SHEET 1 BA 4 PHE B 198 ALA B 200 0 SHEET 2 BA 4 LEU B 206 ARG B 210 -1 O LEU B 208 N LYS B 199 SHEET 3 BA 4 GLU B 243 GLN B 249 -1 O LEU B 246 N LYS B 209 SHEET 4 BA 4 PHE B 234 ARG B 240 -1 N HIS B 235 O GLN B 247 SHEET 1 BB 5 CYS B 342 SER B 343 0 SHEET 2 BB 5 PHE B 330 LYS B 336 -1 O ILE B 335 N SER B 343 SHEET 3 BB 5 CYS B 259 MSE B 265 -1 O VAL B 260 N LYS B 336 SHEET 4 BB 5 SER B 399 HIS B 404 -1 O LEU B 400 N CYS B 263 SHEET 5 BB 5 ALA B 410 ILE B 415 -1 O GLY B 411 N VAL B 403 SHEET 1 BC 2 LEU B 284 ARG B 285 0 SHEET 2 BC 2 VAL B 310 THR B 311 -1 O VAL B 310 N ARG B 285 SHEET 1 BD 2 HIS B 393 ILE B 396 0 SHEET 2 BD 2 LYS B 419 PRO B 422 -1 O LYS B 419 N ILE B 396 LINK C MSE A 186 N SER A 187 1555 1555 1.33 LINK C LEU A 222 N MSE A 223 1555 1555 1.33 LINK C MSE A 223 N ALA A 224 1555 1555 1.33 LINK C LYS A 264 N MSE A 265 1555 1555 1.31 LINK C MSE A 265 N GLY A 266 1555 1555 1.30 LINK C ASP A 287 N MSE A 288 1555 1555 1.32 LINK C MSE A 288 N TYR A 289 1555 1555 1.32 LINK C LYS A 291 N MSE A 292 1555 1555 1.33 LINK C MSE A 292 N LEU A 293 1555 1555 1.33 LINK C TYR A 315 N MSE A 316 1555 1555 1.33 LINK C MSE A 316 N GLN A 317 1555 1555 1.32 LINK C MSE B 186 N SER B 187 1555 1555 1.33 LINK C LEU B 222 N MSE B 223 1555 1555 1.32 LINK C MSE B 223 N ALA B 224 1555 1555 1.32 LINK C LYS B 264 N MSE B 265 1555 1555 1.31 LINK C MSE B 265 N GLY B 266 1555 1555 1.30 LINK C ASP B 287 N MSE B 288 1555 1555 1.33 LINK C MSE B 288 N TYR B 289 1555 1555 1.33 LINK C LYS B 291 N MSE B 292 1555 1555 1.32 LINK C MSE B 292 N LEU B 293 1555 1555 1.33 LINK C TYR B 315 N MSE B 316 1555 1555 1.33 LINK C MSE B 316 N GLN B 317 1555 1555 1.33 SITE 1 AC1 5 LYS A 264 LYS A 312 LYS A 419 HOH A2026 SITE 2 AC1 5 HOH A2125 SITE 1 AC2 3 ARG A 285 MSE A 288 LYS A 312 SITE 1 AC3 4 TYR A 315 ARG A 319 HOH A2144 HOH A2145 SITE 1 AC4 3 LYS B 291 TYR B 315 ARG B 319 CRYST1 69.304 95.798 180.352 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014429 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005545 0.00000 MTRIX1 1 -0.232200 0.550900 0.801600 -59.49110 1 MTRIX2 1 0.550900 -0.604800 0.575200 13.15350 1 MTRIX3 1 0.801600 0.575200 -0.163000 47.94010 1 HETATM 1 N MSE A 186 22.282 36.652 65.875 1.00 67.18 N HETATM 2 CA MSE A 186 21.759 35.715 66.914 1.00 67.17 C HETATM 3 C MSE A 186 22.661 34.467 67.021 1.00 65.64 C HETATM 4 O MSE A 186 22.917 33.785 66.027 1.00 65.62 O HETATM 5 CB MSE A 186 20.308 35.334 66.585 1.00 68.18 C HETATM 6 CG MSE A 186 19.396 35.053 67.795 1.00 71.93 C HETATM 7 SE MSE A 186 18.737 36.600 68.838 1.00 83.01 SE HETATM 8 CE MSE A 186 16.814 36.043 69.082 1.00 79.42 C