HEADER TRANSFERASE 11-JUL-04 1W30 TITLE PYRR OF MYCOBACTERIUM TUBERCULOSIS AS A POTENTIAL DRUG TARGET COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRR BIFUNCTIONAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: URACIL PHOSPHORIBOSYLTRANSFERASE, UPRTASE; COMPND 5 EC: 2.4.2.9; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: GSHHHHHH C-TERMINAL TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: HRV37; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS PYRR, TRANSFERASE, GLYCOSYLTRANSFERASE, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, TB, TBSGC EXPDTA X-RAY DIFFRACTION AUTHOR K.A.KANTARDJIEFF,C.VASQUEZ,P.CASTRO,N.N.WARFEL,B.-S.RHO,T.LEKIN,C.- AUTHOR 2 Y.KIM,B.W.SEGELKE,T.TERWILLIGER,B.RUPP,TB STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (TBSGC) REVDAT 9 13-DEC-23 1W30 1 REMARK REVDAT 8 21-AUG-19 1W30 1 REMARK REVDAT 7 08-MAY-19 1W30 1 REMARK REVDAT 6 06-MAY-15 1W30 1 AUTHOR REMARK VERSN FORMUL REVDAT 5 24-FEB-09 1W30 1 VERSN REVDAT 4 06-APR-05 1W30 1 JRNL REVDAT 3 03-FEB-05 1W30 1 KEYWDS REVDAT 2 24-JAN-05 1W30 1 KEYWDS AUTHOR REMARK REVDAT 1 29-SEP-04 1W30 0 JRNL AUTH K.A.KANTARDJIEFF,C.VASQUEZ,P.CASTRO,N.N.WARFEL,B.-S.RHO, JRNL AUTH 2 T.LEKIN,C.-Y.KIM,B.W.SEGELKE,T.TERWILLIGER,B.RUPP JRNL TITL STRUCTURE OF PYRR (RV1379) FROM MYCOBACTERIUM TUBERCULOSIS: JRNL TITL 2 A PERSISTENCE GENE AND PROTEIN DRUG TARGET JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 355 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 15805589 JRNL DOI 10.1107/S090744490403389X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 30276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1589 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2213 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2656 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 329 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.611 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2692 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2623 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 3655 ; 1.798 ; 1.974 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 6018 ; 0.967 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 347 ; 6.650 ; 5.000 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3012 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 549 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 561 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3221 ; 0.266 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1870 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 192 ; 0.200 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.217 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 104 ; 0.319 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.248 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1738 ; 1.222 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2805 ; 2.167 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 954 ; 2.998 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 850 ; 5.167 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 25 A 37 4 REMARK 3 1 B 25 B 37 4 REMARK 3 2 A 51 A 69 4 REMARK 3 2 B 51 B 69 4 REMARK 3 3 A 78 A 83 4 REMARK 3 3 B 78 B 83 4 REMARK 3 4 A 116 A 135 4 REMARK 3 4 B 116 B 135 4 REMARK 3 5 A 145 A 176 4 REMARK 3 5 B 145 B 176 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. N-TERMINAL REGION 1-11 ABSENT IN DENSITY. LOOPS 90- REMARK 3 100 HIGHLY FLEXIBLE AND ABSENT FROM MODEL, ALTHOUGH INTERMITTENT REMARK 3 DENSITY FRAGMENTS CAN BE TRACED. RESIDUE ATOMS. C -TERMINAL REMARK 3 LINKER AND HIS TAG GSHHHHHH ABSENT FROM DENSITY, FRAGMENTS OF REMARK 3 ISOLATED OR FRAGMENTED DENSITY ARE VISIBLE AND MAY BE REMARK 3 REPRESENTED BY SOLVENT ATOMS. ALL REGIONS EXCLUDED FROM NCS SHOW REMARK 3 HIGH MOBILITY AND VARIATION BETWEEN MOLECULES. REMARK 4 REMARK 4 1W30 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1290013169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 120.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34571 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 38.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.42300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR V. 2.5 REMARK 200 STARTING MODEL: PDB ENTRY 1A3C REMARK 200 REMARK 200 REMARK: 3D-PSSM HOMOLOGY MODEL FROM 1A3C REFINED WITH SCWRL 3.0 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROPS 0.5UL + 0.5UL IN REMARK 280 INTELLIPLATE, 0.1M IMIDAZOLE-MALEATE PH 7.5, 26% PEG-MME 2K, 2.8% REMARK 280 EDTA. CRYSTAL APPROXIMATELY 50 MICRON RHOMBOID., PH 6.50, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.57200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.14400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 103.14400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.57200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 154.71600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2161 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE FOR CHAINS A, B: ASP (21) ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 GLY A 10 REMARK 465 ARG A 11 REMARK 465 ASP A 91 REMARK 465 LEU A 92 REMARK 465 MET A 93 REMARK 465 ILE A 94 REMARK 465 LYS A 95 REMARK 465 PRO A 96 REMARK 465 PRO A 97 REMARK 465 ARG A 98 REMARK 465 GLY A 194 REMARK 465 SER A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 GLY B 5 REMARK 465 ASP B 6 REMARK 465 ALA B 7 REMARK 465 ALA B 8 REMARK 465 ILE B 9 REMARK 465 GLY B 10 REMARK 465 ARG B 11 REMARK 465 ASP B 91 REMARK 465 LEU B 92 REMARK 465 MET B 93 REMARK 465 ILE B 94 REMARK 465 LYS B 95 REMARK 465 GLY B 194 REMARK 465 SER B 195 REMARK 465 HIS B 196 REMARK 465 HIS B 197 REMARK 465 HIS B 198 REMARK 465 HIS B 199 REMARK 465 HIS B 200 REMARK 465 HIS B 201 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 90 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 49 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 133 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 136 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 136 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 152 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 184 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG B 28 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 65 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 65 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 84 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 120 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 TYR B 123 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 155 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP B 187 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 14 132.00 -175.28 REMARK 500 VAL A 43 149.34 130.35 REMARK 500 ASP A 112 15.96 58.10 REMARK 500 TYR A 123 -94.30 -107.06 REMARK 500 ALA B 38 31.37 80.83 REMARK 500 PRO B 42 15.53 -61.26 REMARK 500 VAL B 43 113.97 73.86 REMARK 500 ASP B 112 15.47 55.25 REMARK 500 TYR B 123 -83.67 -109.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2019 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A2031 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A2040 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B2005 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH B2006 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B2013 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH B2014 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH B2068 DISTANCE = 6.34 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV1379 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 D21N MUTATION, C-TERMINAL GSHHHHHH TAG DBREF 1W30 A 1 193 UNP P71807 PYRR_MYCTU 1 193 DBREF 1W30 A 194 201 PDB 1W30 1W30 194 201 DBREF 1W30 B 1 193 UNP P71807 PYRR_MYCTU 1 193 DBREF 1W30 B 194 201 PDB 1W30 1W30 194 201 SEQADV 1W30 ASN A 21 UNP P71807 ASP 21 ENGINEERED MUTATION SEQADV 1W30 ASN B 21 UNP P71807 ASP 21 ENGINEERED MUTATION SEQRES 1 A 201 MET GLY ALA ALA GLY ASP ALA ALA ILE GLY ARG GLU SER SEQRES 2 A 201 ARG GLU LEU MET SER ALA ALA ASN VAL GLY ARG THR ILE SEQRES 3 A 201 SER ARG ILE ALA HIS GLN ILE ILE GLU LYS THR ALA LEU SEQRES 4 A 201 ASP ASP PRO VAL GLY PRO ASP ALA PRO ARG VAL VAL LEU SEQRES 5 A 201 LEU GLY ILE PRO THR ARG GLY VAL THR LEU ALA ASN ARG SEQRES 6 A 201 LEU ALA GLY ASN ILE THR GLU TYR SER GLY ILE HIS VAL SEQRES 7 A 201 GLY HIS GLY ALA LEU ASP ILE THR LEU TYR ARG ASP ASP SEQRES 8 A 201 LEU MET ILE LYS PRO PRO ARG PRO LEU ALA SER THR SER SEQRES 9 A 201 ILE PRO ALA GLY GLY ILE ASP ASP ALA LEU VAL ILE LEU SEQRES 10 A 201 VAL ASP ASP VAL LEU TYR SER GLY ARG SER VAL ARG SER SEQRES 11 A 201 ALA LEU ASP ALA LEU ARG ASP VAL GLY ARG PRO ARG ALA SEQRES 12 A 201 VAL GLN LEU ALA VAL LEU VAL ASP ARG GLY HIS ARG GLU SEQRES 13 A 201 LEU PRO LEU ARG ALA ASP TYR VAL GLY LYS ASN VAL PRO SEQRES 14 A 201 THR SER ARG SER GLU SER VAL HIS VAL ARG LEU ARG GLU SEQRES 15 A 201 HIS ASP GLY ARG ASP GLY VAL VAL ILE SER ARG GLY SER SEQRES 16 A 201 HIS HIS HIS HIS HIS HIS SEQRES 1 B 201 MET GLY ALA ALA GLY ASP ALA ALA ILE GLY ARG GLU SER SEQRES 2 B 201 ARG GLU LEU MET SER ALA ALA ASN VAL GLY ARG THR ILE SEQRES 3 B 201 SER ARG ILE ALA HIS GLN ILE ILE GLU LYS THR ALA LEU SEQRES 4 B 201 ASP ASP PRO VAL GLY PRO ASP ALA PRO ARG VAL VAL LEU SEQRES 5 B 201 LEU GLY ILE PRO THR ARG GLY VAL THR LEU ALA ASN ARG SEQRES 6 B 201 LEU ALA GLY ASN ILE THR GLU TYR SER GLY ILE HIS VAL SEQRES 7 B 201 GLY HIS GLY ALA LEU ASP ILE THR LEU TYR ARG ASP ASP SEQRES 8 B 201 LEU MET ILE LYS PRO PRO ARG PRO LEU ALA SER THR SER SEQRES 9 B 201 ILE PRO ALA GLY GLY ILE ASP ASP ALA LEU VAL ILE LEU SEQRES 10 B 201 VAL ASP ASP VAL LEU TYR SER GLY ARG SER VAL ARG SER SEQRES 11 B 201 ALA LEU ASP ALA LEU ARG ASP VAL GLY ARG PRO ARG ALA SEQRES 12 B 201 VAL GLN LEU ALA VAL LEU VAL ASP ARG GLY HIS ARG GLU SEQRES 13 B 201 LEU PRO LEU ARG ALA ASP TYR VAL GLY LYS ASN VAL PRO SEQRES 14 B 201 THR SER ARG SER GLU SER VAL HIS VAL ARG LEU ARG GLU SEQRES 15 B 201 HIS ASP GLY ARG ASP GLY VAL VAL ILE SER ARG GLY SER SEQRES 16 B 201 HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *329(H2 O) HELIX 1 1 SER A 18 THR A 37 1 20 HELIX 2 2 THR A 57 GLY A 75 1 19 HELIX 3 3 ILE A 85 ARG A 89 5 5 HELIX 4 4 GLY A 125 GLY A 139 1 15 HELIX 5 5 LEU A 180 GLY A 185 1 6 HELIX 6 6 SER B 18 ALA B 38 1 21 HELIX 7 7 THR B 57 GLY B 75 1 19 HELIX 8 8 ILE B 85 ARG B 89 5 5 HELIX 9 9 GLY B 125 GLY B 139 1 15 HELIX 10 10 LEU B 180 GLY B 185 1 6 SHEET 1 AA 3 SER A 13 MET A 17 0 SHEET 2 AA 3 GLY A 188 SER A 192 -1 O VAL A 189 N LEU A 16 SHEET 3 AA 3 SER A 175 ARG A 179 -1 O SER A 175 N SER A 192 SHEET 1 AB 5 GLY A 79 ALA A 82 0 SHEET 2 AB 5 VAL A 50 GLY A 54 1 O VAL A 50 N GLY A 79 SHEET 3 AB 5 LEU A 114 LEU A 122 1 O LEU A 114 N VAL A 51 SHEET 4 AB 5 ALA A 143 ASP A 151 1 O ALA A 143 N VAL A 115 SHEET 5 AB 5 TYR A 163 ASN A 167 1 O TYR A 163 N VAL A 148 SHEET 1 BA 3 SER B 13 MET B 17 0 SHEET 2 BA 3 GLY B 188 SER B 192 -1 O VAL B 189 N LEU B 16 SHEET 3 BA 3 SER B 175 ARG B 179 -1 O SER B 175 N SER B 192 SHEET 1 BB 5 GLY B 79 ALA B 82 0 SHEET 2 BB 5 VAL B 50 GLY B 54 1 O VAL B 50 N GLY B 79 SHEET 3 BB 5 LEU B 114 LEU B 122 1 O LEU B 114 N VAL B 51 SHEET 4 BB 5 ALA B 143 ASP B 151 1 O ALA B 143 N VAL B 115 SHEET 5 BB 5 TYR B 163 ASN B 167 1 O TYR B 163 N VAL B 148 CISPEP 1 PRO A 56 THR A 57 0 5.74 CISPEP 2 PRO B 56 THR B 57 0 -6.59 CRYST1 66.638 66.638 154.716 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015006 0.008664 0.000000 0.00000 SCALE2 0.000000 0.017328 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006463 0.00000 MTRIX1 1 -0.366200 -0.335400 0.868000 -48.00000 1 MTRIX2 1 -0.371700 -0.802400 -0.466900 70.31000 1 MTRIX3 1 0.853100 -0.493600 0.169100 64.12000 1