HEADER TOXIN/SUGAR BINDING PROTEIN 14-JUL-04 1W3A TITLE THREE DIMENSIONAL STRUCTURE OF A NOVEL PORE-FORMING LECTIN FROM THE TITLE 2 MUSHROOM LAETIPORUS SULPHUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOLYTIC LECTIN LSLA; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAETIPORUS SULPHUREUS; SOURCE 3 ORGANISM_TAXID: 5630 KEYWDS TOXIN, PORE-FORMING TOXIN, HEMOLYTIC LECTIN, OLIGOMER, BETA-TREFOIL, KEYWDS 2 SUGAR-BINDING PROTEIN, TOXIN-SUGAR BINDING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MANCHENO,H.TATENO,I.J.GOLDSTEIN,M.MARTINEZ-RIPOLL,J.A.HERMOSO REVDAT 7 08-MAY-24 1W3A 1 HETSYN REVDAT 6 29-JUL-20 1W3A 1 COMPND REMARK HET HETNAM REVDAT 6 2 1 HETSYN FORMUL LINK SITE REVDAT 6 3 1 ATOM REVDAT 5 06-OCT-09 1W3A 1 HEADER KEYWDS DBREF HETNAM REVDAT 4 24-FEB-09 1W3A 1 VERSN REVDAT 3 13-MAR-07 1W3A 1 JRNL REVDAT 2 27-APR-05 1W3A 1 JRNL REVDAT 1 01-FEB-05 1W3A 0 JRNL AUTH J.M.MANCHENO,H.TATENO,I.J.GOLDSTEIN,M.MARTINEZ-RIPOLL, JRNL AUTH 2 J.A.HERMOSO JRNL TITL STRUCTURAL ANALYSIS OF THE LAETIPORUS SULPHUREUS HEMOLYTIC JRNL TITL 2 PORE-FORMING LECTIN IN COMPLEX WITH SUGARS JRNL REF J.BIOL.CHEM. V. 280 17251 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15687495 JRNL DOI 10.1074/JBC.M413933200 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 16567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 889 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1168 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.4390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2467 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.399 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.301 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.270 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2590 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2239 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3521 ; 1.315 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5220 ; 2.059 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 7.960 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2847 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 551 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 413 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2491 ; 0.237 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1449 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 82 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.266 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 68 ; 0.287 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.663 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1553 ; 0.714 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2526 ; 1.313 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1036 ; 1.072 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 995 ; 1.911 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 1W3A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1290020432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18325 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 31.50 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 31.40 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE, MLPHARE, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 96.71750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 96.71750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 96.71750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 96.71750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 96.71750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 96.71750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 50.76300 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 87.92410 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 101.52600 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 50.76300 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 87.92410 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 96.71750 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 96.71750 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 101.52600 REMARK 350 BIOMT2 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 96.71750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 315 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2046 O HOH A 2046 2655 1.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 93 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 8 -178.83 -69.42 REMARK 500 PRO A 30 -162.01 -73.42 REMARK 500 ASP A 45 -46.01 -14.92 REMARK 500 ARG A 76 -61.61 -97.96 REMARK 500 ASP A 88 71.08 -55.40 REMARK 500 THR A 103 -115.70 60.45 REMARK 500 TRP A 131 -158.21 -154.78 REMARK 500 THR A 175 -77.96 -73.80 REMARK 500 GLN A 176 -96.58 -10.95 REMARK 500 THR A 177 64.30 13.72 REMARK 500 THR A 181 73.41 -151.79 REMARK 500 SER A 182 -90.51 16.46 REMARK 500 SER A 183 -139.29 -97.50 REMARK 500 GLN A 184 -72.67 -29.38 REMARK 500 THR A 185 -135.81 38.53 REMARK 500 GLN A 186 -49.78 -170.98 REMARK 500 THR A 205 -52.01 -135.04 REMARK 500 ALA A 224 -79.13 -89.25 REMARK 500 GLU A 225 -32.43 -144.96 REMARK 500 ASP A 235 71.86 -110.64 REMARK 500 VAL A 256 -96.86 -146.62 REMARK 500 ARG A 257 119.88 -10.48 REMARK 500 ALA A 258 75.14 -169.40 REMARK 500 THR A 311 -149.42 -129.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W3F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HEMOLYTIC LECTIN FROM THE MUSHROOM REMARK 900 LAETIPORUS SULPHUREUS COMPLEXED WITH N-ACETYLLACTOSAMINE IN THE REMARK 900 GAMMA MOTIF REMARK 900 RELATED ID: 1W3G RELATED DB: PDB REMARK 900 HEMOLYTIC LECTIN FROM THE MUSHROOM LAETIPORUS SULPHUREUS COMPLEXED REMARK 900 WITH TWO N- ACETYLLACTOSAMINE MOLECULES. DBREF 1W3A A 1 315 UNP Q7Z8V1 Q7Z8V1_9APHY 1 315 SEQRES 1 A 315 MET THR ASP ILE TYR ILE PRO PRO GLU GLY LEU TYR PHE SEQRES 2 A 315 ARG LEU LEU GLY PHE ALA SER ARG GLN VAL ILE PHE ALA SEQRES 3 A 315 ARG ASN SER PRO SER PRO ASP VAL GLY LEU SER PRO VAL SEQRES 4 A 315 ASN ASP GLN ALA THR ASP GLN TYR PHE SER LEU ILE TYR SEQRES 5 A 315 GLY THR GLY GLU HIS ALA GLY LEU TYR ALA ILE LYS SER SEQRES 6 A 315 LYS ALA THR GLY LYS VAL LEU PHE SER ARG ARG PRO ALA SEQRES 7 A 315 GLU PRO TYR VAL GLY GLN ILE ASP GLY ASP GLY ARG TYR SEQRES 8 A 315 PRO ASP ASN TRP PHE LYS ILE GLU PRO GLY LYS THR TYR SEQRES 9 A 315 LEU SER LYS TYR PHE ARG LEU VAL GLN PRO SER THR GLY SEQRES 10 A 315 THR ALA LEU VAL SER ARG THR HIS LEU GLN PRO TYR PHE SEQRES 11 A 315 TRP ASN HIS PRO GLN THR GLU VAL PHE ASP ASP GLN TYR SEQRES 12 A 315 PHE THR PHE LEU PHE GLU ASP MET SER ILE ASP LYS ILE SEQRES 13 A 315 GLU TYR ASP LEU LYS ASP GLY ARG ILE LEU SER SER THR SEQRES 14 A 315 PRO ASN VAL LEU ALA THR GLN THR LEU GLU ASN THR SER SEQRES 15 A 315 SER GLN THR GLN GLU MET SER PHE ASN LEU SER GLN THR SEQRES 16 A 315 LEU THR GLN THR SER THR PHE ALA TYR THR ALA GLY PHE SEQRES 17 A 315 THR ILE ALA VAL GLY THR ALA PHE LYS ALA GLY VAL PRO SEQRES 18 A 315 ILE PHE ALA GLU THR GLU PHE LYS VAL ASP ILE SER VAL SEQRES 19 A 315 ASP ASN GLN TRP ASN TRP GLY GLU GLU ASN THR PHE SER SEQRES 20 A 315 LYS THR TYR THR ALA THR PHE SER VAL ARG ALA GLY PRO SEQRES 21 A 315 GLY GLU THR VAL LYS ALA VAL SER THR VAL ASP SER GLY SEQRES 22 A 315 ILE ILE ASN VAL PRO PHE THR ALA TYR LEU SER SER LYS SEQRES 23 A 315 SER THR GLY PHE GLU VAL THR THR GLU GLY ILE TRP ARG SEQRES 24 A 315 GLY VAL SER SER TRP ASP LEU ARG HIS THR LEU THR SER SEQRES 25 A 315 VAL THR ALA HET GLC B 1 12 HET GAL B 2 11 HET GOL A1316 6 HET GOL A1317 6 HET GOL A1318 6 HET GOL A1319 6 HET GOL A1320 6 HET GOL A1321 6 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM GOL GLYCEROL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GLC C6 H12 O6 FORMUL 2 GAL C6 H12 O6 FORMUL 3 GOL 6(C3 H8 O3) FORMUL 9 HOH *77(H2 O) HELIX 1 1 THR A 44 GLN A 46 5 3 HELIX 2 2 GLY A 55 HIS A 57 5 3 HELIX 3 3 PRO A 92 ASN A 94 5 3 HELIX 4 4 THR A 103 LEU A 105 5 3 HELIX 5 5 PRO A 114 THR A 116 5 3 HELIX 6 6 PHE A 139 ASP A 141 5 3 HELIX 7 7 LEU A 160 ASP A 162 5 3 SHEET 1 AA 4 PHE A 13 GLY A 17 0 SHEET 2 AA 4 TYR A 143 PHE A 148 -1 O THR A 145 N LEU A 16 SHEET 3 AA 4 PHE A 109 GLN A 113 -1 O PHE A 109 N PHE A 144 SHEET 4 AA 4 LYS A 97 PRO A 100 -1 O LYS A 97 N VAL A 112 SHEET 1 AB 5 PHE A 13 GLY A 17 0 SHEET 2 AB 5 TYR A 143 PHE A 148 -1 O THR A 145 N LEU A 16 SHEET 3 AB 5 PHE A 109 GLN A 113 -1 O PHE A 109 N PHE A 144 SHEET 4 AB 5 THR A 118 SER A 122 -1 O THR A 118 N GLN A 113 SHEET 5 AB 5 PHE A 130 PRO A 134 -1 O TRP A 131 N VAL A 121 SHEET 1 AC 2 VAL A 23 ALA A 26 0 SHEET 2 AC 2 VAL A 34 SER A 37 -1 O GLY A 35 N PHE A 25 SHEET 1 AD 2 PHE A 48 TYR A 52 0 SHEET 2 AD 2 TYR A 61 SER A 65 -1 O ALA A 62 N ILE A 51 SHEET 1 AE 2 VAL A 71 SER A 74 0 SHEET 2 AE 2 VAL A 82 ILE A 85 -1 O GLY A 83 N PHE A 73 SHEET 1 AF 3 MET A 151 TYR A 158 0 SHEET 2 AF 3 VAL A 264 SER A 285 -1 O THR A 280 N GLU A 157 SHEET 3 AF 3 ARG A 164 ILE A 165 -1 O ARG A 164 N ASN A 276 SHEET 1 AG 3 MET A 151 TYR A 158 0 SHEET 2 AG 3 VAL A 264 SER A 285 -1 O THR A 280 N GLU A 157 SHEET 3 AG 3 THR A 169 ALA A 174 -1 O THR A 169 N SER A 272 SHEET 1 AH 2 ALA A 215 LYS A 217 0 SHEET 2 AH 2 GLN A 237 ASN A 239 -1 O TRP A 238 N PHE A 216 SHEET 1 AI 2 VAL A 220 ILE A 222 0 SHEET 2 AI 2 PHE A 228 ASP A 231 -1 O LYS A 229 N ILE A 222 LINK O4 GLC B 1 C1 GAL B 2 1555 1555 1.43 CISPEP 1 SER A 29 PRO A 30 0 -1.61 CISPEP 2 GLU A 79 PRO A 80 0 -4.82 CISPEP 3 GLN A 127 PRO A 128 0 -7.92 CRYST1 101.526 101.526 193.435 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009850 0.005687 0.000000 0.00000 SCALE2 0.000000 0.011373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005170 0.00000