HEADER HYDROLASE 22-JUL-04 1W44 TITLE P4 PROTEIN FROM BACTERIOPHAGE PHI12 IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NTPASE P4; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: P4 PACKAGING ATPASE FROM BACTERIOPHAGE PHI12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTERIOPHAGE PHI-12; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE PHI12; SOURCE 4 ORGANISM_TAXID: 161736; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-32A; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPG27 KEYWDS VIRUS DSRNA, PACKAGING ATPASE, HEXAMERIC HELICASE, MOLECULAR MOTOR, KEYWDS 2 NON-HYDROLYSABLE ATP ANALOGUE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.J.MANCINI,D.E.KAINOV,J.M.GRIMES,R.TUMA,D.H.BAMFORD,D.I.STUART REVDAT 6 08-MAY-24 1W44 1 REMARK REVDAT 5 22-MAY-19 1W44 1 REMARK REVDAT 4 08-MAY-19 1W44 1 REMARK REVDAT 3 02-MAR-11 1W44 1 VERSN REVDAT 2 24-FEB-09 1W44 1 VERSN REVDAT 1 29-OCT-04 1W44 0 JRNL AUTH E.J.MANCINI,D.E.KAINOV,J.M.GRIMES,R.TUMA,D.H.BAMFORD, JRNL AUTH 2 D.I.STUART JRNL TITL ATOMIC SNAPSHOTS OF AN RNA PACKAGING MOTOR REVEAL JRNL TITL 2 CONFORMATIONAL CHANGES LINKING ATP HYDROLYSIS TO RNA JRNL TITL 3 TRANSLOCATION JRNL REF CELL(CAMBRIDGE,MASS.) V. 118 743 2004 JRNL REFN ISSN 0092-8674 JRNL PMID 15369673 JRNL DOI 10.1016/J.CELL.2004.09.007 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 68395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 3482 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8441 REMARK 3 BIN R VALUE (WORKING SET) : 0.2917 REMARK 3 BIN FREE R VALUE : 0.3392 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 443 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6867 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 774 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.64100 REMARK 3 B22 (A**2) : -12.71500 REMARK 3 B33 (A**2) : 6.07400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 20.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.580 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.922 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.182 ; 6.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.222 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.376 ; 8.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MASK REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 80.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ADP_2.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1W44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1290020444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68669 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 24.00 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 20.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 1500, 100MM SODIUM ACETATE PH REMARK 280 4.8 10MM ADP, PROTEIN CONCENTRATION 10 MG/ML, SITTING DROP, 22C, REMARK 280 PH 4.60, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.59250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.45400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.41550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.59250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.45400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.41550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.59250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.45400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.41550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.59250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.45400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.41550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 105.18500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 196 REMARK 465 ALA A 197 REMARK 465 ALA A 198 REMARK 465 GLY A 199 REMARK 465 GLY A 200 REMARK 465 ASN A 201 REMARK 465 THR A 202 REMARK 465 THR A 203 REMARK 465 SER A 204 REMARK 465 GLY A 205 REMARK 465 GLY A 206 REMARK 465 LYS A 300 REMARK 465 GLN A 301 REMARK 465 SER A 302 REMARK 465 GLY A 303 REMARK 465 GLY A 304 REMARK 465 LYS A 305 REMARK 465 GLU A 322 REMARK 465 SER A 323 REMARK 465 VAL A 324 REMARK 465 LEU A 325 REMARK 465 ARG A 326 REMARK 465 ARG A 327 REMARK 465 LEU A 328 REMARK 465 THR A 329 REMARK 465 SER A 330 REMARK 465 ASN A 331 REMARK 465 GLY B 196 REMARK 465 ALA B 197 REMARK 465 ALA B 198 REMARK 465 GLY B 199 REMARK 465 GLY B 200 REMARK 465 ASN B 201 REMARK 465 THR B 202 REMARK 465 THR B 203 REMARK 465 SER B 204 REMARK 465 GLY B 205 REMARK 465 GLY B 206 REMARK 465 LYS B 300 REMARK 465 GLN B 301 REMARK 465 SER B 302 REMARK 465 GLY B 303 REMARK 465 GLY B 304 REMARK 465 LYS B 305 REMARK 465 GLU B 322 REMARK 465 SER B 323 REMARK 465 VAL B 324 REMARK 465 LEU B 325 REMARK 465 ARG B 326 REMARK 465 ARG B 327 REMARK 465 LEU B 328 REMARK 465 THR B 329 REMARK 465 SER B 330 REMARK 465 ASN B 331 REMARK 465 GLY C 196 REMARK 465 ALA C 197 REMARK 465 ALA C 198 REMARK 465 GLY C 199 REMARK 465 GLY C 200 REMARK 465 ASN C 201 REMARK 465 THR C 202 REMARK 465 THR C 203 REMARK 465 SER C 204 REMARK 465 GLY C 205 REMARK 465 GLY C 206 REMARK 465 LYS C 300 REMARK 465 GLN C 301 REMARK 465 SER C 302 REMARK 465 GLY C 303 REMARK 465 GLY C 304 REMARK 465 LYS C 305 REMARK 465 GLU C 322 REMARK 465 SER C 323 REMARK 465 VAL C 324 REMARK 465 LEU C 325 REMARK 465 ARG C 326 REMARK 465 ARG C 327 REMARK 465 LEU C 328 REMARK 465 THR C 329 REMARK 465 SER C 330 REMARK 465 ASN C 331 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 71 128.20 -36.11 REMARK 500 SER A 190 94.78 92.58 REMARK 500 THR A 236 98.04 -46.05 REMARK 500 SER A 237 95.04 172.12 REMARK 500 ASP A 240 -18.35 -39.75 REMARK 500 THR A 261 -168.04 -121.87 REMARK 500 THR A 298 -80.76 -99.93 REMARK 500 GLU A 320 41.85 -86.81 REMARK 500 GLU B 71 135.27 -34.82 REMARK 500 SER B 190 93.18 97.44 REMARK 500 THR B 236 101.72 -46.08 REMARK 500 SER B 237 97.76 171.87 REMARK 500 ASP B 240 -2.15 -47.03 REMARK 500 THR B 298 -92.40 -91.57 REMARK 500 GLU B 320 42.01 -84.64 REMARK 500 GLU C 71 128.46 -31.69 REMARK 500 SER C 190 96.99 91.91 REMARK 500 THR C 236 100.04 -41.03 REMARK 500 SER C 237 102.41 172.77 REMARK 500 ASP C 240 -1.17 -46.36 REMARK 500 THR C 261 -165.95 -122.95 REMARK 500 THR C 298 -82.60 -98.62 REMARK 500 GLU C 320 41.07 -82.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2004 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A2139 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B2027 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH C2100 DISTANCE = 7.26 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 700 DBREF 1W44 A 1 331 UNP Q94M05 Q94M05 1 331 DBREF 1W44 B 1 331 UNP Q94M05 Q94M05 1 331 DBREF 1W44 C 1 331 UNP Q94M05 Q94M05 1 331 SEQRES 1 A 331 MET ILE HIS LEU TYR ASP ALA LYS SER PHE ALA LYS LEU SEQRES 2 A 331 ARG ALA ALA GLN TYR ALA ALA PHE HIS THR ASP ALA PRO SEQRES 3 A 331 GLY SER TRP PHE ASP HIS THR SER GLY VAL LEU GLU SER SEQRES 4 A 331 VAL GLU ASP GLY THR PRO VAL LEU ALA ILE GLY VAL GLU SEQRES 5 A 331 SER GLY ASP ALA ILE VAL PHE ASP LYS ASN ALA GLN ARG SEQRES 6 A 331 ILE VAL ALA TYR LYS GLU LYS SER VAL LYS ALA GLU ASP SEQRES 7 A 331 GLY SER VAL SER VAL VAL GLN VAL GLU ASN GLY PHE MET SEQRES 8 A 331 LYS GLN GLY HIS ARG GLY TRP LEU VAL ASP LEU THR GLY SEQRES 9 A 331 GLU LEU VAL GLY CYS SER PRO VAL VAL ALA GLU PHE GLY SEQRES 10 A 331 GLY HIS ARG TYR ALA SER GLY MET VAL ILE VAL THR GLY SEQRES 11 A 331 LYS GLY ASN SER GLY LYS THR PRO LEU VAL HIS ALA LEU SEQRES 12 A 331 GLY GLU ALA LEU GLY GLY LYS ASP LYS TYR ALA THR VAL SEQRES 13 A 331 ARG PHE GLY GLU PRO LEU SER GLY TYR ASN THR ASP PHE SEQRES 14 A 331 ASN VAL PHE VAL ASP ASP ILE ALA ARG ALA MET LEU GLN SEQRES 15 A 331 HIS ARG VAL ILE VAL ILE ASP SER LEU LYS ASN VAL ILE SEQRES 16 A 331 GLY ALA ALA GLY GLY ASN THR THR SER GLY GLY ILE SER SEQRES 17 A 331 ARG GLY ALA PHE ASP LEU LEU SER ASP ILE GLY ALA MET SEQRES 18 A 331 ALA ALA SER ARG GLY CYS VAL VAL ILE ALA SER LEU ASN SEQRES 19 A 331 PRO THR SER ASN ASP ASP LYS ILE VAL GLU LEU VAL LYS SEQRES 20 A 331 GLU ALA SER ARG SER ASN SER THR SER LEU VAL ILE SER SEQRES 21 A 331 THR ASP VAL ASP GLY GLU TRP GLN VAL LEU THR ARG THR SEQRES 22 A 331 GLY GLU GLY LEU GLN ARG LEU THR HIS THR LEU GLN THR SEQRES 23 A 331 SER TYR GLY GLU HIS SER VAL LEU THR ILE HIS THR SER SEQRES 24 A 331 LYS GLN SER GLY GLY LYS GLN ALA SER GLY LYS ALA ILE SEQRES 25 A 331 GLN THR VAL ILE LYS ASN ASP GLU LEU GLU SER VAL LEU SEQRES 26 A 331 ARG ARG LEU THR SER ASN SEQRES 1 B 331 MET ILE HIS LEU TYR ASP ALA LYS SER PHE ALA LYS LEU SEQRES 2 B 331 ARG ALA ALA GLN TYR ALA ALA PHE HIS THR ASP ALA PRO SEQRES 3 B 331 GLY SER TRP PHE ASP HIS THR SER GLY VAL LEU GLU SER SEQRES 4 B 331 VAL GLU ASP GLY THR PRO VAL LEU ALA ILE GLY VAL GLU SEQRES 5 B 331 SER GLY ASP ALA ILE VAL PHE ASP LYS ASN ALA GLN ARG SEQRES 6 B 331 ILE VAL ALA TYR LYS GLU LYS SER VAL LYS ALA GLU ASP SEQRES 7 B 331 GLY SER VAL SER VAL VAL GLN VAL GLU ASN GLY PHE MET SEQRES 8 B 331 LYS GLN GLY HIS ARG GLY TRP LEU VAL ASP LEU THR GLY SEQRES 9 B 331 GLU LEU VAL GLY CYS SER PRO VAL VAL ALA GLU PHE GLY SEQRES 10 B 331 GLY HIS ARG TYR ALA SER GLY MET VAL ILE VAL THR GLY SEQRES 11 B 331 LYS GLY ASN SER GLY LYS THR PRO LEU VAL HIS ALA LEU SEQRES 12 B 331 GLY GLU ALA LEU GLY GLY LYS ASP LYS TYR ALA THR VAL SEQRES 13 B 331 ARG PHE GLY GLU PRO LEU SER GLY TYR ASN THR ASP PHE SEQRES 14 B 331 ASN VAL PHE VAL ASP ASP ILE ALA ARG ALA MET LEU GLN SEQRES 15 B 331 HIS ARG VAL ILE VAL ILE ASP SER LEU LYS ASN VAL ILE SEQRES 16 B 331 GLY ALA ALA GLY GLY ASN THR THR SER GLY GLY ILE SER SEQRES 17 B 331 ARG GLY ALA PHE ASP LEU LEU SER ASP ILE GLY ALA MET SEQRES 18 B 331 ALA ALA SER ARG GLY CYS VAL VAL ILE ALA SER LEU ASN SEQRES 19 B 331 PRO THR SER ASN ASP ASP LYS ILE VAL GLU LEU VAL LYS SEQRES 20 B 331 GLU ALA SER ARG SER ASN SER THR SER LEU VAL ILE SER SEQRES 21 B 331 THR ASP VAL ASP GLY GLU TRP GLN VAL LEU THR ARG THR SEQRES 22 B 331 GLY GLU GLY LEU GLN ARG LEU THR HIS THR LEU GLN THR SEQRES 23 B 331 SER TYR GLY GLU HIS SER VAL LEU THR ILE HIS THR SER SEQRES 24 B 331 LYS GLN SER GLY GLY LYS GLN ALA SER GLY LYS ALA ILE SEQRES 25 B 331 GLN THR VAL ILE LYS ASN ASP GLU LEU GLU SER VAL LEU SEQRES 26 B 331 ARG ARG LEU THR SER ASN SEQRES 1 C 331 MET ILE HIS LEU TYR ASP ALA LYS SER PHE ALA LYS LEU SEQRES 2 C 331 ARG ALA ALA GLN TYR ALA ALA PHE HIS THR ASP ALA PRO SEQRES 3 C 331 GLY SER TRP PHE ASP HIS THR SER GLY VAL LEU GLU SER SEQRES 4 C 331 VAL GLU ASP GLY THR PRO VAL LEU ALA ILE GLY VAL GLU SEQRES 5 C 331 SER GLY ASP ALA ILE VAL PHE ASP LYS ASN ALA GLN ARG SEQRES 6 C 331 ILE VAL ALA TYR LYS GLU LYS SER VAL LYS ALA GLU ASP SEQRES 7 C 331 GLY SER VAL SER VAL VAL GLN VAL GLU ASN GLY PHE MET SEQRES 8 C 331 LYS GLN GLY HIS ARG GLY TRP LEU VAL ASP LEU THR GLY SEQRES 9 C 331 GLU LEU VAL GLY CYS SER PRO VAL VAL ALA GLU PHE GLY SEQRES 10 C 331 GLY HIS ARG TYR ALA SER GLY MET VAL ILE VAL THR GLY SEQRES 11 C 331 LYS GLY ASN SER GLY LYS THR PRO LEU VAL HIS ALA LEU SEQRES 12 C 331 GLY GLU ALA LEU GLY GLY LYS ASP LYS TYR ALA THR VAL SEQRES 13 C 331 ARG PHE GLY GLU PRO LEU SER GLY TYR ASN THR ASP PHE SEQRES 14 C 331 ASN VAL PHE VAL ASP ASP ILE ALA ARG ALA MET LEU GLN SEQRES 15 C 331 HIS ARG VAL ILE VAL ILE ASP SER LEU LYS ASN VAL ILE SEQRES 16 C 331 GLY ALA ALA GLY GLY ASN THR THR SER GLY GLY ILE SER SEQRES 17 C 331 ARG GLY ALA PHE ASP LEU LEU SER ASP ILE GLY ALA MET SEQRES 18 C 331 ALA ALA SER ARG GLY CYS VAL VAL ILE ALA SER LEU ASN SEQRES 19 C 331 PRO THR SER ASN ASP ASP LYS ILE VAL GLU LEU VAL LYS SEQRES 20 C 331 GLU ALA SER ARG SER ASN SER THR SER LEU VAL ILE SER SEQRES 21 C 331 THR ASP VAL ASP GLY GLU TRP GLN VAL LEU THR ARG THR SEQRES 22 C 331 GLY GLU GLY LEU GLN ARG LEU THR HIS THR LEU GLN THR SEQRES 23 C 331 SER TYR GLY GLU HIS SER VAL LEU THR ILE HIS THR SER SEQRES 24 C 331 LYS GLN SER GLY GLY LYS GLN ALA SER GLY LYS ALA ILE SEQRES 25 C 331 GLN THR VAL ILE LYS ASN ASP GLU LEU GLU SER VAL LEU SEQRES 26 C 331 ARG ARG LEU THR SER ASN HET ADP A 700 27 HET ADP B 700 27 HET ADP C 700 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 4 ADP 3(C10 H15 N5 O10 P2) FORMUL 7 HOH *774(H2 O) HELIX 1 1 ASP A 6 THR A 23 1 18 HELIX 2 2 GLY A 27 SER A 39 1 13 HELIX 3 3 GLY A 135 GLY A 149 1 15 HELIX 4 4 ASP A 168 HIS A 183 1 16 HELIX 5 5 SER A 208 GLY A 226 1 19 HELIX 6 6 ASP A 239 ASN A 253 1 15 HELIX 7 7 GLU A 290 SER A 292 5 3 HELIX 8 8 GLY A 309 ASP A 319 1 11 HELIX 9 9 ASP B 6 THR B 23 1 18 HELIX 10 10 GLY B 27 SER B 39 1 13 HELIX 11 11 GLY B 135 GLY B 149 1 15 HELIX 12 12 ASP B 168 HIS B 183 1 16 HELIX 13 13 SER B 208 GLY B 226 1 19 HELIX 14 14 ILE B 242 ASN B 253 1 12 HELIX 15 15 GLU B 290 SER B 292 5 3 HELIX 16 16 GLY B 309 ASP B 319 1 11 HELIX 17 17 ASP C 6 THR C 23 1 18 HELIX 18 18 GLY C 27 SER C 39 1 13 HELIX 19 19 GLY C 135 GLY C 149 1 15 HELIX 20 20 ASP C 168 HIS C 183 1 16 HELIX 21 21 SER C 208 GLY C 226 1 19 HELIX 22 22 ILE C 242 ASN C 253 1 12 HELIX 23 23 GLU C 290 SER C 292 5 3 HELIX 24 24 GLY C 309 ASP C 319 1 11 SHEET 1 AA 9 HIS A 3 TYR A 5 0 SHEET 2 AA 9 TYR B 153 ARG B 157 -1 O TYR B 153 N TYR A 5 SHEET 3 AA 9 VAL B 185 ASP B 189 1 O VAL B 185 N ALA B 154 SHEET 4 AA 9 VAL B 228 SER B 232 1 O VAL B 228 N ILE B 186 SHEET 5 AA 9 GLY B 124 THR B 129 1 O GLY B 124 N VAL B 229 SHEET 6 AA 9 SER B 256 SER B 260 1 O SER B 256 N ILE B 127 SHEET 7 AA 9 GLU B 266 ARG B 272 -1 O GLN B 268 N ILE B 259 SHEET 8 AA 9 ARG B 279 TYR B 288 -1 O LEU B 280 N THR B 271 SHEET 9 AA 9 ALA B 307 SER B 308 -1 O SER B 308 N ARG B 279 SHEET 1 AB 9 HIS A 3 TYR A 5 0 SHEET 2 AB 9 TYR B 153 ARG B 157 -1 O TYR B 153 N TYR A 5 SHEET 3 AB 9 VAL B 185 ASP B 189 1 O VAL B 185 N ALA B 154 SHEET 4 AB 9 VAL B 228 SER B 232 1 O VAL B 228 N ILE B 186 SHEET 5 AB 9 GLY B 124 THR B 129 1 O GLY B 124 N VAL B 229 SHEET 6 AB 9 SER B 256 SER B 260 1 O SER B 256 N ILE B 127 SHEET 7 AB 9 GLU B 266 ARG B 272 -1 O GLN B 268 N ILE B 259 SHEET 8 AB 9 ARG B 279 TYR B 288 -1 O LEU B 280 N THR B 271 SHEET 9 AB 9 LEU B 294 ILE B 296 -1 O THR B 295 N SER B 287 SHEET 1 AC 4 ARG A 65 ILE A 66 0 SHEET 2 AC 4 ALA A 56 PHE A 59 -1 O VAL A 58 N ILE A 66 SHEET 3 AC 4 LEU A 47 GLY A 50 -1 O LEU A 47 N PHE A 59 SHEET 4 AC 4 GLY A 97 TRP A 98 -1 O GLY A 97 N ALA A 48 SHEET 1 AD 3 TYR A 69 LYS A 75 0 SHEET 2 AD 3 VAL A 81 GLU A 87 -1 O SER A 82 N VAL A 74 SHEET 3 AD 3 PHE A 90 GLN A 93 -1 O PHE A 90 N GLU A 87 SHEET 1 AE 2 VAL A 112 PHE A 116 0 SHEET 2 AE 2 HIS A 119 ALA A 122 -1 O HIS A 119 N PHE A 116 SHEET 1 AF 8 ALA A 154 ARG A 157 0 SHEET 2 AF 8 VAL A 185 ASP A 189 1 O VAL A 185 N ALA A 154 SHEET 3 AF 8 VAL A 228 SER A 232 1 O VAL A 228 N ILE A 186 SHEET 4 AF 8 GLY A 124 THR A 129 1 O GLY A 124 N VAL A 229 SHEET 5 AF 8 SER A 256 SER A 260 1 O SER A 256 N ILE A 127 SHEET 6 AF 8 GLU A 266 ARG A 272 -1 O GLN A 268 N ILE A 259 SHEET 7 AF 8 ARG A 279 TYR A 288 -1 O LEU A 280 N THR A 271 SHEET 8 AF 8 ALA A 307 SER A 308 -1 O SER A 308 N ARG A 279 SHEET 1 AG 8 ALA A 154 ARG A 157 0 SHEET 2 AG 8 VAL A 185 ASP A 189 1 O VAL A 185 N ALA A 154 SHEET 3 AG 8 VAL A 228 SER A 232 1 O VAL A 228 N ILE A 186 SHEET 4 AG 8 GLY A 124 THR A 129 1 O GLY A 124 N VAL A 229 SHEET 5 AG 8 SER A 256 SER A 260 1 O SER A 256 N ILE A 127 SHEET 6 AG 8 GLU A 266 ARG A 272 -1 O GLN A 268 N ILE A 259 SHEET 7 AG 8 ARG A 279 TYR A 288 -1 O LEU A 280 N THR A 271 SHEET 8 AG 8 LEU A 294 ILE A 296 -1 O THR A 295 N SER A 287 SHEET 1 BA 9 HIS B 3 TYR B 5 0 SHEET 2 BA 9 TYR C 153 ARG C 157 -1 O TYR C 153 N TYR B 5 SHEET 3 BA 9 VAL C 185 ASP C 189 1 O VAL C 185 N ALA C 154 SHEET 4 BA 9 VAL C 228 SER C 232 1 O VAL C 228 N ILE C 186 SHEET 5 BA 9 GLY C 124 THR C 129 1 O GLY C 124 N VAL C 229 SHEET 6 BA 9 SER C 256 SER C 260 1 O SER C 256 N ILE C 127 SHEET 7 BA 9 GLU C 266 ARG C 272 -1 O GLN C 268 N ILE C 259 SHEET 8 BA 9 ARG C 279 TYR C 288 -1 O LEU C 280 N THR C 271 SHEET 9 BA 9 ALA C 307 SER C 308 -1 O SER C 308 N ARG C 279 SHEET 1 BB 9 HIS B 3 TYR B 5 0 SHEET 2 BB 9 TYR C 153 ARG C 157 -1 O TYR C 153 N TYR B 5 SHEET 3 BB 9 VAL C 185 ASP C 189 1 O VAL C 185 N ALA C 154 SHEET 4 BB 9 VAL C 228 SER C 232 1 O VAL C 228 N ILE C 186 SHEET 5 BB 9 GLY C 124 THR C 129 1 O GLY C 124 N VAL C 229 SHEET 6 BB 9 SER C 256 SER C 260 1 O SER C 256 N ILE C 127 SHEET 7 BB 9 GLU C 266 ARG C 272 -1 O GLN C 268 N ILE C 259 SHEET 8 BB 9 ARG C 279 TYR C 288 -1 O LEU C 280 N THR C 271 SHEET 9 BB 9 LEU C 294 ILE C 296 -1 O THR C 295 N SER C 287 SHEET 1 BC 3 ALA B 56 ASP B 60 0 SHEET 2 BC 3 PRO B 45 GLY B 50 -1 N VAL B 46 O PHE B 59 SHEET 3 BC 3 GLY B 97 TRP B 98 -1 O GLY B 97 N ALA B 48 SHEET 1 BD 3 TYR B 69 LYS B 75 0 SHEET 2 BD 3 VAL B 81 GLU B 87 -1 O SER B 82 N VAL B 74 SHEET 3 BD 3 PHE B 90 GLN B 93 -1 O PHE B 90 N GLU B 87 SHEET 1 BE 2 VAL B 112 PHE B 116 0 SHEET 2 BE 2 HIS B 119 ALA B 122 -1 O HIS B 119 N PHE B 116 SHEET 1 CA 3 ALA C 56 ASP C 60 0 SHEET 2 CA 3 PRO C 45 GLY C 50 -1 N VAL C 46 O PHE C 59 SHEET 3 CA 3 GLY C 97 TRP C 98 -1 O GLY C 97 N ALA C 48 SHEET 1 CB 3 TYR C 69 LYS C 75 0 SHEET 2 CB 3 VAL C 81 GLU C 87 -1 O SER C 82 N VAL C 74 SHEET 3 CB 3 PHE C 90 GLN C 93 -1 O PHE C 90 N GLU C 87 SHEET 1 CC 2 VAL C 112 PHE C 116 0 SHEET 2 CC 2 HIS C 119 ALA C 122 -1 O HIS C 119 N PHE C 116 SITE 1 AC1 19 GLY A 135 LYS A 136 THR A 137 PRO A 138 SITE 2 AC1 19 ASN A 234 TYR A 288 SER A 292 HOH A2245 SITE 3 AC1 19 HOH A2266 HOH A2268 HOH A2269 HOH A2270 SITE 4 AC1 19 HOH A2271 GLY C 276 LEU C 277 GLN C 278 SITE 5 AC1 19 LYS C 310 HOH C2224 HOH C2225 SITE 1 AC2 19 GLY A 276 LEU A 277 GLN A 278 LYS A 310 SITE 2 AC2 19 HOH A2222 HOH A2224 HOH A2261 HOH A2263 SITE 3 AC2 19 HOH A2264 GLY B 135 LYS B 136 THR B 137 SITE 4 AC2 19 PRO B 138 ASN B 234 TYR B 288 SER B 292 SITE 5 AC2 19 HOH B2263 HOH B2264 HOH B2265 SITE 1 AC3 23 GLY B 276 GLN B 278 LYS B 310 HOH B2258 SITE 2 AC3 23 GLY C 135 LYS C 136 THR C 137 PRO C 138 SITE 3 AC3 23 ASN C 234 TYR C 288 SER C 292 HOH C2136 SITE 4 AC3 23 HOH C2201 HOH C2229 HOH C2230 HOH C2231 SITE 5 AC3 23 HOH C2232 HOH C2233 HOH C2234 HOH C2235 SITE 6 AC3 23 HOH C2236 HOH C2237 HOH C2238 CRYST1 105.185 130.908 158.831 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009507 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006296 0.00000 MTRIX1 1 0.501500 -0.002130 -0.865160 26.22544 1 MTRIX2 1 0.012450 0.999910 0.004760 -1.02493 1 MTRIX3 1 0.865070 -0.013160 0.501480 -44.98109 1 MTRIX1 2 -0.498500 0.004030 -0.866880 78.57649 1 MTRIX2 2 0.009640 0.999950 -0.000890 -0.74916 1 MTRIX3 2 0.866840 -0.008800 -0.498510 -45.27072 1