HEADER HYDROLASE 22-JUL-04 1W47 TITLE P4 PROTEIN FROM BACTERIOPHAGE PHI12 IN COMPLEX WITH ADP AND MN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NTPASE P4; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: P4 PACKAGING ATPASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTERIOPHAGE PHI-12; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE PHI12; SOURCE 4 ORGANISM_TAXID: 161736; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-32A; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPG27 KEYWDS HYDROLASE, DSRNA VIRUS, PACKAGING ATPASE, HEXAMERIC HELICASE, KEYWDS 2 MOLECULAR MOTOR, NON-HYDROLYSABLE ATP ANALOGUE EXPDTA X-RAY DIFFRACTION AUTHOR E.J.MANCINI,D.E.KAINOV,J.M.GRIMES,R.TUMA,D.H.BAMFORD,D.I.STUART REVDAT 4 08-MAY-24 1W47 1 REMARK LINK REVDAT 3 08-MAY-19 1W47 1 REMARK REVDAT 2 24-FEB-09 1W47 1 VERSN REVDAT 1 04-NOV-04 1W47 0 JRNL AUTH E.J.MANCINI,D.E.KAINOV,J.M.GRIMES,R.TUMA,D.H.BAMFORD, JRNL AUTH 2 D.I.STUART JRNL TITL ATOMIC SNAPSHOTS OF AN RNA PACKAGING MOTOR REVEAL JRNL TITL 2 CONFORMATIONAL CHANGES LINKING ATP HYDROLYSIS TO RNA JRNL TITL 3 TRANSLOCATION JRNL REF CELL(CAMBRIDGE,MASS.) V. 118 743 2004 JRNL REFN ISSN 0092-8674 JRNL PMID 15369673 JRNL DOI 10.1016/J.CELL.2004.09.007 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 0.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 33382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3509 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.60 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3905 REMARK 3 BIN R VALUE (WORKING SET) : 0.2657 REMARK 3 BIN FREE R VALUE : 0.2379 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 195 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.00600 REMARK 3 B22 (A**2) : -14.21600 REMARK 3 B33 (A**2) : 8.11300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 30.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.157 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.120 ; 6.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.833 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.874 ; 8.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MASK REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 80.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ADP_2.PAR REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ADP_2.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1W47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1290020462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.74363 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36738 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: CO-CRYSTALS OF P4-ADP-MN ARE ISOMORPHOUS TO P4-ADP REMARK 200 CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 1500, 100MM SODIUM ACETATE PH REMARK 280 4.8 10 MM ADP 10MM MNCL, PROTEIN CONCENTRATION 10 MG/ML, SITTING REMARK 280 DROPS, 22C, PH 4.60, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.40000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.10000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.20000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.40000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.10000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.20000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.40000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.10000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.20000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.40000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.10000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 104.80000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 196 REMARK 465 ALA A 197 REMARK 465 ALA A 198 REMARK 465 GLY A 199 REMARK 465 GLY A 200 REMARK 465 ASN A 201 REMARK 465 THR A 202 REMARK 465 THR A 203 REMARK 465 SER A 204 REMARK 465 GLY A 205 REMARK 465 GLY A 206 REMARK 465 LYS A 300 REMARK 465 GLN A 301 REMARK 465 SER A 302 REMARK 465 GLY A 303 REMARK 465 GLY A 304 REMARK 465 LYS A 305 REMARK 465 GLN A 306 REMARK 465 ALA A 307 REMARK 465 SER A 308 REMARK 465 GLY A 309 REMARK 465 LYS A 310 REMARK 465 ALA A 311 REMARK 465 ILE A 312 REMARK 465 GLN A 313 REMARK 465 THR A 314 REMARK 465 VAL A 315 REMARK 465 ILE A 316 REMARK 465 LYS A 317 REMARK 465 ASN A 318 REMARK 465 ASP A 319 REMARK 465 GLU A 320 REMARK 465 LEU A 321 REMARK 465 GLU A 322 REMARK 465 SER A 323 REMARK 465 VAL A 324 REMARK 465 LEU A 325 REMARK 465 ARG A 326 REMARK 465 ARG A 327 REMARK 465 LEU A 328 REMARK 465 THR A 329 REMARK 465 SER A 330 REMARK 465 ASN A 331 REMARK 465 GLY B 196 REMARK 465 ALA B 197 REMARK 465 ALA B 198 REMARK 465 GLY B 199 REMARK 465 GLY B 200 REMARK 465 ASN B 201 REMARK 465 THR B 202 REMARK 465 THR B 203 REMARK 465 SER B 204 REMARK 465 GLY B 205 REMARK 465 GLY B 206 REMARK 465 LYS B 300 REMARK 465 GLN B 301 REMARK 465 SER B 302 REMARK 465 GLY B 303 REMARK 465 GLY B 304 REMARK 465 LYS B 305 REMARK 465 GLN B 306 REMARK 465 ALA B 307 REMARK 465 SER B 308 REMARK 465 GLY B 309 REMARK 465 LYS B 310 REMARK 465 ALA B 311 REMARK 465 ILE B 312 REMARK 465 GLN B 313 REMARK 465 THR B 314 REMARK 465 VAL B 315 REMARK 465 ILE B 316 REMARK 465 LYS B 317 REMARK 465 ASN B 318 REMARK 465 ASP B 319 REMARK 465 GLU B 320 REMARK 465 LEU B 321 REMARK 465 GLU B 322 REMARK 465 SER B 323 REMARK 465 VAL B 324 REMARK 465 LEU B 325 REMARK 465 ARG B 326 REMARK 465 ARG B 327 REMARK 465 LEU B 328 REMARK 465 THR B 329 REMARK 465 SER B 330 REMARK 465 ASN B 331 REMARK 465 GLY C 196 REMARK 465 ALA C 197 REMARK 465 ALA C 198 REMARK 465 GLY C 199 REMARK 465 GLY C 200 REMARK 465 ASN C 201 REMARK 465 THR C 202 REMARK 465 THR C 203 REMARK 465 SER C 204 REMARK 465 GLY C 205 REMARK 465 GLY C 206 REMARK 465 LYS C 300 REMARK 465 GLN C 301 REMARK 465 SER C 302 REMARK 465 GLY C 303 REMARK 465 GLY C 304 REMARK 465 LYS C 305 REMARK 465 GLN C 306 REMARK 465 ALA C 307 REMARK 465 SER C 308 REMARK 465 GLY C 309 REMARK 465 LYS C 310 REMARK 465 ALA C 311 REMARK 465 ILE C 312 REMARK 465 GLN C 313 REMARK 465 THR C 314 REMARK 465 VAL C 315 REMARK 465 ILE C 316 REMARK 465 LYS C 317 REMARK 465 ASN C 318 REMARK 465 ASP C 319 REMARK 465 GLU C 320 REMARK 465 LEU C 321 REMARK 465 GLU C 322 REMARK 465 SER C 323 REMARK 465 VAL C 324 REMARK 465 LEU C 325 REMARK 465 ARG C 326 REMARK 465 ARG C 327 REMARK 465 LEU C 328 REMARK 465 THR C 329 REMARK 465 SER C 330 REMARK 465 ASN C 331 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 71 130.46 -38.57 REMARK 500 LYS A 131 85.62 -29.77 REMARK 500 ASN A 133 16.30 50.86 REMARK 500 SER A 134 -139.38 -71.03 REMARK 500 SER A 190 113.70 85.71 REMARK 500 PRO A 235 79.96 -67.43 REMARK 500 SER A 237 -172.17 -60.33 REMARK 500 ASN A 238 -168.47 -60.38 REMARK 500 ASP A 240 -146.67 -71.40 REMARK 500 THR A 298 -92.56 -97.75 REMARK 500 GLU B 71 130.25 -38.53 REMARK 500 LYS B 131 85.80 -29.66 REMARK 500 ASN B 133 16.40 50.96 REMARK 500 SER B 134 -139.23 -71.16 REMARK 500 SER B 190 112.73 86.45 REMARK 500 PRO B 235 79.56 -67.67 REMARK 500 SER B 237 -172.14 -60.39 REMARK 500 ASN B 238 -168.56 -60.47 REMARK 500 ASP B 240 -147.12 -72.06 REMARK 500 THR B 298 -92.60 -97.69 REMARK 500 GLU C 71 130.25 -38.54 REMARK 500 LYS C 131 85.61 -29.46 REMARK 500 ASN C 133 16.15 50.64 REMARK 500 SER C 134 -139.74 -70.90 REMARK 500 SER C 190 113.08 84.82 REMARK 500 PRO C 235 79.96 -67.58 REMARK 500 SER C 237 -172.01 -60.24 REMARK 500 ASN C 238 -168.56 -60.57 REMARK 500 ASP C 240 -146.52 -71.49 REMARK 500 THR C 298 -92.26 -97.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2004 DISTANCE = 6.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 137 OG1 REMARK 620 2 ADP A 700 O1B 92.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 137 OG1 REMARK 620 2 ADP B 700 O1B 92.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 137 OG1 REMARK 620 2 ADP C 700 O1B 92.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W44 RELATED DB: PDB REMARK 900 P4 PROTEIN FROM BACTERIOPHAGE PHI12 IN COMPLEX WITH ADP REMARK 900 RELATED ID: 1W46 RELATED DB: PDB REMARK 900 P4 PROTEIN FROM BACTERIOPHAGE PHI12 IN COMPLEX WITH ADP AND MG REMARK 900 RELATED ID: 1W48 RELATED DB: PDB REMARK 900 P4 PROTEIN FROM BACTERIOPHAGE PHI12 IN COMPLEX WITH AMPCPP REMARK 900 RELATED ID: 1W49 RELATED DB: PDB REMARK 900 P4 PROTEIN FROM BACTERIOPHAGE PHI12 IN COMPLEX WITH AMPCPP AND MG REMARK 900 RELATED ID: 1W4A RELATED DB: PDB REMARK 900 P4 PROTEIN FROM BACTERIOPHAGE PHI12 IN COMPLEX WITH AMPCPP AND MN REMARK 900 RELATED ID: 1W4B RELATED DB: PDB REMARK 900 P4 PROTEIN FROM BACTERIOPHAGE PHI12 IN COMPLEX WITH PRODUCT (AMPCPP REMARK 900 MG 22C) REMARK 900 RELATED ID: 1W4C RELATED DB: PDB REMARK 900 P4 PROTEIN FROM BACTERIOPHAGE PHI12 APO STATE DBREF 1W47 A 1 331 UNP Q94M05 Q94M05 1 331 DBREF 1W47 B 1 331 UNP Q94M05 Q94M05 1 331 DBREF 1W47 C 1 331 UNP Q94M05 Q94M05 1 331 SEQRES 1 A 331 MET ILE HIS LEU TYR ASP ALA LYS SER PHE ALA LYS LEU SEQRES 2 A 331 ARG ALA ALA GLN TYR ALA ALA PHE HIS THR ASP ALA PRO SEQRES 3 A 331 GLY SER TRP PHE ASP HIS THR SER GLY VAL LEU GLU SER SEQRES 4 A 331 VAL GLU ASP GLY THR PRO VAL LEU ALA ILE GLY VAL GLU SEQRES 5 A 331 SER GLY ASP ALA ILE VAL PHE ASP LYS ASN ALA GLN ARG SEQRES 6 A 331 ILE VAL ALA TYR LYS GLU LYS SER VAL LYS ALA GLU ASP SEQRES 7 A 331 GLY SER VAL SER VAL VAL GLN VAL GLU ASN GLY PHE MET SEQRES 8 A 331 LYS GLN GLY HIS ARG GLY TRP LEU VAL ASP LEU THR GLY SEQRES 9 A 331 GLU LEU VAL GLY CYS SER PRO VAL VAL ALA GLU PHE GLY SEQRES 10 A 331 GLY HIS ARG TYR ALA SER GLY MET VAL ILE VAL THR GLY SEQRES 11 A 331 LYS GLY ASN SER GLY LYS THR PRO LEU VAL HIS ALA LEU SEQRES 12 A 331 GLY GLU ALA LEU GLY GLY LYS ASP LYS TYR ALA THR VAL SEQRES 13 A 331 ARG PHE GLY GLU PRO LEU SER GLY TYR ASN THR ASP PHE SEQRES 14 A 331 ASN VAL PHE VAL ASP ASP ILE ALA ARG ALA MET LEU GLN SEQRES 15 A 331 HIS ARG VAL ILE VAL ILE ASP SER LEU LYS ASN VAL ILE SEQRES 16 A 331 GLY ALA ALA GLY GLY ASN THR THR SER GLY GLY ILE SER SEQRES 17 A 331 ARG GLY ALA PHE ASP LEU LEU SER ASP ILE GLY ALA MET SEQRES 18 A 331 ALA ALA SER ARG GLY CYS VAL VAL ILE ALA SER LEU ASN SEQRES 19 A 331 PRO THR SER ASN ASP ASP LYS ILE VAL GLU LEU VAL LYS SEQRES 20 A 331 GLU ALA SER ARG SER ASN SER THR SER LEU VAL ILE SER SEQRES 21 A 331 THR ASP VAL ASP GLY GLU TRP GLN VAL LEU THR ARG THR SEQRES 22 A 331 GLY GLU GLY LEU GLN ARG LEU THR HIS THR LEU GLN THR SEQRES 23 A 331 SER TYR GLY GLU HIS SER VAL LEU THR ILE HIS THR SER SEQRES 24 A 331 LYS GLN SER GLY GLY LYS GLN ALA SER GLY LYS ALA ILE SEQRES 25 A 331 GLN THR VAL ILE LYS ASN ASP GLU LEU GLU SER VAL LEU SEQRES 26 A 331 ARG ARG LEU THR SER ASN SEQRES 1 B 331 MET ILE HIS LEU TYR ASP ALA LYS SER PHE ALA LYS LEU SEQRES 2 B 331 ARG ALA ALA GLN TYR ALA ALA PHE HIS THR ASP ALA PRO SEQRES 3 B 331 GLY SER TRP PHE ASP HIS THR SER GLY VAL LEU GLU SER SEQRES 4 B 331 VAL GLU ASP GLY THR PRO VAL LEU ALA ILE GLY VAL GLU SEQRES 5 B 331 SER GLY ASP ALA ILE VAL PHE ASP LYS ASN ALA GLN ARG SEQRES 6 B 331 ILE VAL ALA TYR LYS GLU LYS SER VAL LYS ALA GLU ASP SEQRES 7 B 331 GLY SER VAL SER VAL VAL GLN VAL GLU ASN GLY PHE MET SEQRES 8 B 331 LYS GLN GLY HIS ARG GLY TRP LEU VAL ASP LEU THR GLY SEQRES 9 B 331 GLU LEU VAL GLY CYS SER PRO VAL VAL ALA GLU PHE GLY SEQRES 10 B 331 GLY HIS ARG TYR ALA SER GLY MET VAL ILE VAL THR GLY SEQRES 11 B 331 LYS GLY ASN SER GLY LYS THR PRO LEU VAL HIS ALA LEU SEQRES 12 B 331 GLY GLU ALA LEU GLY GLY LYS ASP LYS TYR ALA THR VAL SEQRES 13 B 331 ARG PHE GLY GLU PRO LEU SER GLY TYR ASN THR ASP PHE SEQRES 14 B 331 ASN VAL PHE VAL ASP ASP ILE ALA ARG ALA MET LEU GLN SEQRES 15 B 331 HIS ARG VAL ILE VAL ILE ASP SER LEU LYS ASN VAL ILE SEQRES 16 B 331 GLY ALA ALA GLY GLY ASN THR THR SER GLY GLY ILE SER SEQRES 17 B 331 ARG GLY ALA PHE ASP LEU LEU SER ASP ILE GLY ALA MET SEQRES 18 B 331 ALA ALA SER ARG GLY CYS VAL VAL ILE ALA SER LEU ASN SEQRES 19 B 331 PRO THR SER ASN ASP ASP LYS ILE VAL GLU LEU VAL LYS SEQRES 20 B 331 GLU ALA SER ARG SER ASN SER THR SER LEU VAL ILE SER SEQRES 21 B 331 THR ASP VAL ASP GLY GLU TRP GLN VAL LEU THR ARG THR SEQRES 22 B 331 GLY GLU GLY LEU GLN ARG LEU THR HIS THR LEU GLN THR SEQRES 23 B 331 SER TYR GLY GLU HIS SER VAL LEU THR ILE HIS THR SER SEQRES 24 B 331 LYS GLN SER GLY GLY LYS GLN ALA SER GLY LYS ALA ILE SEQRES 25 B 331 GLN THR VAL ILE LYS ASN ASP GLU LEU GLU SER VAL LEU SEQRES 26 B 331 ARG ARG LEU THR SER ASN SEQRES 1 C 331 MET ILE HIS LEU TYR ASP ALA LYS SER PHE ALA LYS LEU SEQRES 2 C 331 ARG ALA ALA GLN TYR ALA ALA PHE HIS THR ASP ALA PRO SEQRES 3 C 331 GLY SER TRP PHE ASP HIS THR SER GLY VAL LEU GLU SER SEQRES 4 C 331 VAL GLU ASP GLY THR PRO VAL LEU ALA ILE GLY VAL GLU SEQRES 5 C 331 SER GLY ASP ALA ILE VAL PHE ASP LYS ASN ALA GLN ARG SEQRES 6 C 331 ILE VAL ALA TYR LYS GLU LYS SER VAL LYS ALA GLU ASP SEQRES 7 C 331 GLY SER VAL SER VAL VAL GLN VAL GLU ASN GLY PHE MET SEQRES 8 C 331 LYS GLN GLY HIS ARG GLY TRP LEU VAL ASP LEU THR GLY SEQRES 9 C 331 GLU LEU VAL GLY CYS SER PRO VAL VAL ALA GLU PHE GLY SEQRES 10 C 331 GLY HIS ARG TYR ALA SER GLY MET VAL ILE VAL THR GLY SEQRES 11 C 331 LYS GLY ASN SER GLY LYS THR PRO LEU VAL HIS ALA LEU SEQRES 12 C 331 GLY GLU ALA LEU GLY GLY LYS ASP LYS TYR ALA THR VAL SEQRES 13 C 331 ARG PHE GLY GLU PRO LEU SER GLY TYR ASN THR ASP PHE SEQRES 14 C 331 ASN VAL PHE VAL ASP ASP ILE ALA ARG ALA MET LEU GLN SEQRES 15 C 331 HIS ARG VAL ILE VAL ILE ASP SER LEU LYS ASN VAL ILE SEQRES 16 C 331 GLY ALA ALA GLY GLY ASN THR THR SER GLY GLY ILE SER SEQRES 17 C 331 ARG GLY ALA PHE ASP LEU LEU SER ASP ILE GLY ALA MET SEQRES 18 C 331 ALA ALA SER ARG GLY CYS VAL VAL ILE ALA SER LEU ASN SEQRES 19 C 331 PRO THR SER ASN ASP ASP LYS ILE VAL GLU LEU VAL LYS SEQRES 20 C 331 GLU ALA SER ARG SER ASN SER THR SER LEU VAL ILE SER SEQRES 21 C 331 THR ASP VAL ASP GLY GLU TRP GLN VAL LEU THR ARG THR SEQRES 22 C 331 GLY GLU GLY LEU GLN ARG LEU THR HIS THR LEU GLN THR SEQRES 23 C 331 SER TYR GLY GLU HIS SER VAL LEU THR ILE HIS THR SER SEQRES 24 C 331 LYS GLN SER GLY GLY LYS GLN ALA SER GLY LYS ALA ILE SEQRES 25 C 331 GLN THR VAL ILE LYS ASN ASP GLU LEU GLU SER VAL LEU SEQRES 26 C 331 ARG ARG LEU THR SER ASN HET ADP A 700 27 HET MN A 701 1 HET ADP B 700 27 HET MN B 701 1 HET ADP C 700 27 HET MN C 701 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MN MANGANESE (II) ION FORMUL 4 ADP 3(C10 H15 N5 O10 P2) FORMUL 5 MN 3(MN 2+) FORMUL 10 HOH *500(H2 O) HELIX 1 1 ASP A 6 THR A 23 1 18 HELIX 2 2 GLY A 27 SER A 39 1 13 HELIX 3 3 GLY A 135 GLY A 149 1 15 HELIX 4 4 ASP A 168 HIS A 183 1 16 HELIX 5 5 SER A 208 GLY A 226 1 19 HELIX 6 6 ILE A 242 SER A 254 1 13 HELIX 7 7 GLU A 290 SER A 292 5 3 HELIX 8 8 ASP B 6 THR B 23 1 18 HELIX 9 9 GLY B 27 SER B 39 1 13 HELIX 10 10 GLY B 135 GLY B 149 1 15 HELIX 11 11 ASP B 168 HIS B 183 1 16 HELIX 12 12 SER B 208 GLY B 226 1 19 HELIX 13 13 ILE B 242 SER B 254 1 13 HELIX 14 14 GLU B 290 SER B 292 5 3 HELIX 15 15 ASP C 6 THR C 23 1 18 HELIX 16 16 GLY C 27 SER C 39 1 13 HELIX 17 17 GLY C 135 GLY C 149 1 15 HELIX 18 18 ASP C 168 HIS C 183 1 16 HELIX 19 19 SER C 208 GLY C 226 1 19 HELIX 20 20 ILE C 242 SER C 254 1 13 HELIX 21 21 GLU C 290 SER C 292 5 3 SHEET 1 AA 9 HIS A 3 TYR A 5 0 SHEET 2 AA 9 TYR B 153 ARG B 157 -1 O TYR B 153 N TYR A 5 SHEET 3 AA 9 VAL B 185 ASP B 189 1 O VAL B 185 N ALA B 154 SHEET 4 AA 9 VAL B 228 SER B 232 1 O VAL B 228 N ILE B 186 SHEET 5 AA 9 GLY B 124 THR B 129 1 O GLY B 124 N VAL B 229 SHEET 6 AA 9 SER B 256 SER B 260 1 O SER B 256 N ILE B 127 SHEET 7 AA 9 GLU B 266 ARG B 272 -1 O GLN B 268 N ILE B 259 SHEET 8 AA 9 ARG B 279 TYR B 288 -1 O LEU B 280 N THR B 271 SHEET 9 AA 9 LEU B 294 ILE B 296 -1 O THR B 295 N SER B 287 SHEET 1 AB 4 ARG A 65 ILE A 66 0 SHEET 2 AB 4 ALA A 56 ASP A 60 -1 O VAL A 58 N ILE A 66 SHEET 3 AB 4 PRO A 45 GLY A 50 -1 N VAL A 46 O PHE A 59 SHEET 4 AB 4 GLY A 97 TRP A 98 -1 O GLY A 97 N ALA A 48 SHEET 1 AC 3 TYR A 69 LYS A 75 0 SHEET 2 AC 3 VAL A 81 VAL A 86 -1 O SER A 82 N VAL A 74 SHEET 3 AC 3 MET A 91 GLN A 93 -1 N LYS A 92 O GLN A 85 SHEET 1 AD 2 VAL A 112 PHE A 116 0 SHEET 2 AD 2 HIS A 119 ALA A 122 -1 O HIS A 119 N PHE A 116 SHEET 1 AE 8 ALA A 154 ARG A 157 0 SHEET 2 AE 8 VAL A 185 ASP A 189 1 O VAL A 185 N ALA A 154 SHEET 3 AE 8 VAL A 228 SER A 232 1 O VAL A 228 N ILE A 186 SHEET 4 AE 8 GLY A 124 THR A 129 1 O GLY A 124 N VAL A 229 SHEET 5 AE 8 SER A 256 SER A 260 1 O SER A 256 N ILE A 127 SHEET 6 AE 8 GLU A 266 ARG A 272 -1 O GLN A 268 N ILE A 259 SHEET 7 AE 8 ARG A 279 TYR A 288 -1 O LEU A 280 N THR A 271 SHEET 8 AE 8 LEU A 294 ILE A 296 -1 O THR A 295 N SER A 287 SHEET 1 BA 9 HIS B 3 TYR B 5 0 SHEET 2 BA 9 TYR C 153 ARG C 157 -1 O TYR C 153 N TYR B 5 SHEET 3 BA 9 VAL C 185 ASP C 189 1 O VAL C 185 N ALA C 154 SHEET 4 BA 9 VAL C 228 SER C 232 1 O VAL C 228 N ILE C 186 SHEET 5 BA 9 GLY C 124 THR C 129 1 O GLY C 124 N VAL C 229 SHEET 6 BA 9 SER C 256 SER C 260 1 O SER C 256 N ILE C 127 SHEET 7 BA 9 GLU C 266 ARG C 272 -1 O GLN C 268 N ILE C 259 SHEET 8 BA 9 ARG C 279 TYR C 288 -1 O LEU C 280 N THR C 271 SHEET 9 BA 9 LEU C 294 ILE C 296 -1 O THR C 295 N SER C 287 SHEET 1 BB 4 ARG B 65 ILE B 66 0 SHEET 2 BB 4 ALA B 56 ASP B 60 -1 O VAL B 58 N ILE B 66 SHEET 3 BB 4 PRO B 45 GLY B 50 -1 N VAL B 46 O PHE B 59 SHEET 4 BB 4 GLY B 97 TRP B 98 -1 O GLY B 97 N ALA B 48 SHEET 1 BC 3 TYR B 69 LYS B 75 0 SHEET 2 BC 3 VAL B 81 VAL B 86 -1 O SER B 82 N VAL B 74 SHEET 3 BC 3 MET B 91 GLN B 93 -1 N LYS B 92 O GLN B 85 SHEET 1 BD 2 VAL B 112 PHE B 116 0 SHEET 2 BD 2 HIS B 119 ALA B 122 -1 O HIS B 119 N PHE B 116 SHEET 1 CA 3 ALA C 56 ASP C 60 0 SHEET 2 CA 3 PRO C 45 GLY C 50 -1 N VAL C 46 O PHE C 59 SHEET 3 CA 3 GLY C 97 TRP C 98 -1 O GLY C 97 N ALA C 48 SHEET 1 CB 3 TYR C 69 LYS C 75 0 SHEET 2 CB 3 VAL C 81 VAL C 86 -1 O SER C 82 N VAL C 74 SHEET 3 CB 3 MET C 91 GLN C 93 -1 N LYS C 92 O GLN C 85 SHEET 1 CC 2 VAL C 112 PHE C 116 0 SHEET 2 CC 2 HIS C 119 ALA C 122 -1 O HIS C 119 N PHE C 116 LINK OG1 THR A 137 MN MN A 701 1555 1555 2.73 LINK O1B ADP A 700 MN MN A 701 1555 1555 2.36 LINK OG1 THR B 137 MN MN B 701 1555 1555 2.72 LINK O1B ADP B 700 MN MN B 701 1555 1555 2.35 LINK OG1 THR C 137 MN MN C 701 1555 1555 2.70 LINK O1B ADP C 700 MN MN C 701 1555 1555 2.35 SITE 1 AC1 3 THR A 137 ASP A 189 ADP A 700 SITE 1 AC2 3 THR B 137 ASP B 189 ADP B 700 SITE 1 AC3 3 THR C 137 ASP C 189 ADP C 700 SITE 1 AC4 15 ASN A 133 SER A 134 GLY A 135 LYS A 136 SITE 2 AC4 15 THR A 137 ASN A 234 TYR A 288 SER A 292 SITE 3 AC4 15 MN A 701 HOH A2170 GLY C 276 LEU C 277 SITE 4 AC4 15 GLN C 278 ARG C 279 HOH C2141 SITE 1 AC5 13 GLY A 276 LEU A 277 ARG A 279 HOH A2148 SITE 2 AC5 13 ASN B 133 SER B 134 GLY B 135 LYS B 136 SITE 3 AC5 13 THR B 137 ASN B 234 TYR B 288 SER B 292 SITE 4 AC5 13 MN B 701 SITE 1 AC6 15 GLY B 276 LEU B 277 ARG B 279 HOH B2136 SITE 2 AC6 15 ASN C 133 SER C 134 GLY C 135 LYS C 136 SITE 3 AC6 15 THR C 137 ASN C 234 TYR C 288 SER C 292 SITE 4 AC6 15 MN C 701 HOH C2153 HOH C2164 CRYST1 104.800 128.200 158.400 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009542 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006313 0.00000 MTRIX1 1 0.498250 0.003040 -0.867030 26.23811 1 MTRIX2 1 0.004060 0.999970 0.005840 -0.37084 1 MTRIX3 1 0.867020 -0.006430 0.498230 -45.12800 1 MTRIX1 2 -0.498700 0.003390 -0.866770 78.37495 1 MTRIX2 2 0.009370 0.999950 -0.001490 -0.69053 1 MTRIX3 2 0.866720 -0.008870 -0.498710 -45.09346 1