HEADER SIGNAL TRANSDUCTION 26-JUL-04 1W4M TITLE STRUCTURE OF THE HUMAN PLECKSTRIN DEP DOMAIN BY MULTIDIMENSIONAL NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLECKSTRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN DEP DOMAIN, RESIDUES 121-223; COMPND 5 SYNONYM: HUMAN PLECKSTRIN DEP DOMAIN, PLATELET P47 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET9D, PETM30 KEYWDS SIGNAL TRANSDUCTION, DEP DOMAIN, HUMAN PLECKSTRIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.CIVERA,B.SIMON,G.STIER,M.SATTLER,M.J.MACIAS REVDAT 4 15-MAY-24 1W4M 1 REMARK REVDAT 3 24-FEB-09 1W4M 1 VERSN REVDAT 2 04-MAY-05 1W4M 1 JRNL REVDAT 1 15-DEC-04 1W4M 0 JRNL AUTH C.CIVERA,B.SIMON,G.STIER,M.SATTLER,M.J.MACIAS JRNL TITL STRUCTURE AND DYNAMICS OF THE HUMAN PLECKSTRIN DEP DOMAIN: JRNL TITL 2 DISTINCT MOLECULAR FEATURES OF A NOVEL DEP DOMAIN SUBFAMILY JRNL REF PROTEINS: STRUCT.,FUNCT., V. 58 354 2005 JRNL REF 2 GENET. JRNL REFN ISSN 0887-3585 JRNL PMID 15573383 JRNL DOI 10.1002/PROT.20320 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1W4M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1290020067. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 30 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 20MM PHOSPHATE BUFFER, 30MM REMARK 210 NACL, 3MM DITHIOTHREITOL (DTT), REMARK 210 0. 03% (W/V) NAN3 IN 90% H2O / REMARK 210 10% D2O OR 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D HOMONUCLEAR TOCSY AND NOESY; REMARK 210 1H-15N-HSQC; HNCA; CBCANH; REMARK 210 CBCACONH; HNCO; HCCCONH; HCCH- REMARK 210 TOCSY; HBHACONH; HBCBCCDHD; REMARK 210 HBCBCCDCEHE3D; 13C-EDITED TOCSY; REMARK 210 1H-15N-HNHA; IPAP 1H-15N-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA CNS CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 PRO A 1 REMARK 465 GLU A 2 REMARK 465 THR A 3 REMARK 465 ILE A 4 REMARK 465 PRO A 100 REMARK 465 ASP A 101 REMARK 465 SER A 102 REMARK 465 GLY A 103 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 15 -169.43 -66.91 REMARK 500 1 THR A 16 -87.37 -82.64 REMARK 500 1 ILE A 20 -176.13 -65.00 REMARK 500 1 GLU A 22 103.32 -57.52 REMARK 500 1 LYS A 27 -86.93 -128.50 REMARK 500 1 ARG A 52 -57.05 -123.89 REMARK 500 1 ASP A 91 40.62 -86.11 REMARK 500 2 ASP A 15 -173.79 -60.77 REMARK 500 2 THR A 16 -86.83 -85.52 REMARK 500 2 GLU A 22 105.16 -54.79 REMARK 500 2 LYS A 27 -92.71 -88.46 REMARK 500 2 ASP A 28 -67.45 -120.17 REMARK 500 2 ARG A 52 -54.92 -125.92 REMARK 500 2 PRO A 72 105.81 -59.94 REMARK 500 2 ALA A 85 34.96 -90.44 REMARK 500 2 ASP A 91 43.10 -85.32 REMARK 500 3 ASP A 15 -174.76 -63.56 REMARK 500 3 THR A 16 -85.05 -85.61 REMARK 500 3 ILE A 20 -179.19 -62.66 REMARK 500 3 GLU A 22 101.19 -50.92 REMARK 500 3 LYS A 27 -82.34 -109.57 REMARK 500 3 ASN A 48 -157.97 -115.53 REMARK 500 3 ARG A 52 -55.83 -124.82 REMARK 500 3 ASP A 91 37.16 -97.74 REMARK 500 4 ASP A 15 -178.34 -63.26 REMARK 500 4 THR A 16 -82.60 -85.06 REMARK 500 4 ILE A 20 -177.40 -65.96 REMARK 500 4 GLU A 22 105.13 -56.14 REMARK 500 4 LYS A 27 -128.20 -103.78 REMARK 500 4 ASP A 28 -72.01 -84.51 REMARK 500 4 ASN A 48 -162.49 -113.44 REMARK 500 4 ARG A 52 -55.00 -129.53 REMARK 500 4 ASP A 82 -74.12 -86.57 REMARK 500 4 ALA A 85 40.01 -92.75 REMARK 500 4 PRO A 88 -77.96 -67.25 REMARK 500 4 ASP A 91 36.92 -90.15 REMARK 500 5 ASP A 15 -171.20 -66.63 REMARK 500 5 THR A 16 -86.72 -83.79 REMARK 500 5 ILE A 20 -169.14 -66.52 REMARK 500 5 LYS A 21 -155.22 -79.45 REMARK 500 5 GLU A 22 93.99 -168.94 REMARK 500 5 LYS A 27 -165.00 -127.35 REMARK 500 5 ASN A 48 -163.03 -104.31 REMARK 500 5 SER A 50 -70.48 -70.37 REMARK 500 5 ARG A 52 -56.84 -125.24 REMARK 500 5 PRO A 72 150.80 -48.08 REMARK 500 5 ALA A 85 55.32 -111.17 REMARK 500 5 PRO A 88 42.43 -96.43 REMARK 500 5 ASP A 91 39.51 -86.72 REMARK 500 6 ASP A 15 -170.92 -66.69 REMARK 500 REMARK 500 THIS ENTRY HAS 90 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PLS RELATED DB: PDB REMARK 900 PLECKSTRIN (N-TERMINAL PLECKSTRIN HOMOLOGY DOMAIN) MUTANT WITH LEU REMARK 900 GLU (HIS)6 ADDED TO THE C TERMINUS (INS(G105-LEHHHHHH)) (NMR, 25 REMARK 900 STRUCTURES) DBREF 1W4M A 1 103 UNP P08567 PLEK_HUMAN 121 223 SEQRES 1 A 103 PRO GLU THR ILE ASP LEU GLY ALA LEU TYR LEU SER MET SEQRES 2 A 103 LYS ASP THR GLU LYS GLY ILE LYS GLU LEU ASN LEU GLU SEQRES 3 A 103 LYS ASP LYS LYS ILE PHE ASN HIS CYS PHE THR GLY ASN SEQRES 4 A 103 CYS VAL ILE ASP TRP LEU VAL SER ASN GLN SER VAL ARG SEQRES 5 A 103 ASN ARG GLN GLU GLY LEU MET ILE ALA SER SER LEU LEU SEQRES 6 A 103 ASN GLU GLY TYR LEU GLN PRO ALA GLY ASP MET SER LYS SEQRES 7 A 103 SER ALA VAL ASP GLY THR ALA GLU ASN PRO PHE LEU ASP SEQRES 8 A 103 ASN PRO ASP ALA PHE TYR TYR PHE PRO ASP SER GLY HELIX 1 1 ASP A 5 LYS A 14 1 10 HELIX 2 2 GLY A 38 ASN A 48 1 11 HELIX 3 3 ASN A 53 GLY A 68 1 16 HELIX 4 4 GLY A 74 VAL A 81 1 8 SHEET 1 AA 2 LEU A 25 GLU A 26 0 SHEET 2 AA 2 ILE A 31 PHE A 32 -1 O PHE A 32 N LEU A 25 SHEET 1 AB 3 CYS A 35 THR A 37 0 SHEET 2 AB 3 PHE A 96 TYR A 98 -1 O TYR A 97 N PHE A 36 SHEET 3 AB 3 GLN A 71 ALA A 73 -1 O GLN A 71 N TYR A 98 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1