HEADER LIPASE 04-AUG-04 1W52 TITLE CRYSTAL STRUCTURE OF A PROTEOLYZED FORM OF PANCREATIC LIPASE RELATED TITLE 2 PROTEIN 2 FROM HORSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANCREATIC LIPASE RELATED PROTEIN 2; COMPND 3 CHAIN: X SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; SOURCE 3 ORGANISM_COMMON: HORSE; SOURCE 4 ORGANISM_TAXID: 9796; SOURCE 5 ORGAN: PANCREAS KEYWDS LIPASE, PANCREATIC LIPASE RELATED PROTEINS, DETERGENT, CLEAVED FLAP EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MANCHENO,S.JAYNE,B.KERFELEC,C.CHAPUS,I.CRENON,J.A.HERMOSO REVDAT 3 13-DEC-23 1W52 1 REMARK LINK REVDAT 2 24-FEB-09 1W52 1 VERSN REVDAT 1 12-JUL-06 1W52 0 JRNL AUTH J.M.MANCHENO,S.JAYNE,B.KERFELEC,C.CHAPUS,I.CRENON, JRNL AUTH 2 J.A.HERMOSO JRNL TITL CRYSTALIZATION OF A PROTEOLYZED FORM OF THE HORSE PANCREATIC JRNL TITL 2 LIPASE-RELATED PROTEIN 2: STRUCTURAL BASIS FOR THE SPECIFIC JRNL TITL 3 DETERGENT REQUIREMENT. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 2107 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 15502342 JRNL DOI 10.1107/S0907444904024229 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 847 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1155 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3494 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.968 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.420 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.313 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.505 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.892 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.838 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3611 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3129 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4891 ; 1.993 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7337 ; 1.368 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 7.549 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 515 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4045 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 729 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1012 ; 0.266 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4070 ; 0.262 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2082 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 91 ; 0.194 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.173 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.369 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.329 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.281 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2222 ; 1.765 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3576 ; 3.487 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1389 ; 3.502 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1315 ; 6.163 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. CHAINS FROM SEVERAL SEQUENCE REGIONS FROM THE C- REMARK 3 TERMINAL DOMAIN ARE NOT DEFINED IN THE ELECTRON DENSITY MAP THE REMARK 3 FOLLOWING REGIONS ARE NOT DEFINED IN ELECTRON DENSITY MAP, 346- REMARK 3 354,363-368,379-386,398-402,407-424,433-452 B- FACTORS OF THESE REMARK 3 RESIDUES HAVE BEEN CHANGED TOP 100.00 REMARK 4 REMARK 4 1W52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1290020635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16857 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : 46.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1BU8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.21200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.60600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.60600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.21200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER X 243 REMARK 465 PHE X 244 REMARK 465 SER X 245 REMARK 465 THR X 246 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP X 57 OG1 THR X 60 2.11 REMARK 500 O ILE X 61 OG SER X 64 2.12 REMARK 500 O ARG X 363 O GLY X 367 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 80 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP X 85 O - C - N ANGL. DEV. = -11.8 DEGREES REMARK 500 ASP X 107 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP X 288 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP X 336 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP X 388 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP X 390 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 VAL X 404 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 ASP X 429 CB - CG - OD2 ANGL. DEV. = 8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR X 6 -106.76 -4.81 REMARK 500 ASP X 13 4.33 -66.64 REMARK 500 LYS X 15 140.34 -15.26 REMARK 500 ASP X 48 -58.19 -134.91 REMARK 500 LYS X 71 156.76 -48.92 REMARK 500 PHE X 79 119.04 -39.78 REMARK 500 ASP X 85 -25.27 107.20 REMARK 500 SER X 86 -174.13 -57.76 REMARK 500 ALA X 114 -176.69 -68.25 REMARK 500 ILE X 123 -38.48 -39.36 REMARK 500 SER X 142 26.22 46.45 REMARK 500 SER X 154 -117.39 56.87 REMARK 500 LEU X 167 41.98 -101.02 REMARK 500 GLU X 168 31.95 37.66 REMARK 500 ASP X 178 76.97 33.40 REMARK 500 CYS X 183 -3.31 81.87 REMARK 500 PHE X 184 -56.94 -127.08 REMARK 500 ARG X 192 -142.10 -106.07 REMARK 500 ASP X 207 44.28 -141.43 REMARK 500 PRO X 213 80.44 3.71 REMARK 500 SER X 214 -23.45 159.54 REMARK 500 LEU X 215 33.92 71.22 REMARK 500 ARG X 241 -150.11 -63.77 REMARK 500 ILE X 248 22.70 98.16 REMARK 500 ASP X 249 87.62 41.31 REMARK 500 ASN X 251 -15.33 -47.36 REMARK 500 ASN X 278 50.82 -142.13 REMARK 500 GLU X 295 44.77 -87.44 REMARK 500 ALA X 303 -77.56 -32.92 REMARK 500 GLU X 324 15.39 58.98 REMARK 500 SER X 351 -55.15 -124.54 REMARK 500 ALA X 354 -161.19 -116.09 REMARK 500 SER X 365 -57.89 -174.20 REMARK 500 SER X 369 -126.63 -78.85 REMARK 500 ASP X 382 75.66 28.26 REMARK 500 SER X 383 -113.02 -120.48 REMARK 500 SER X 384 150.27 164.01 REMARK 500 TYR X 385 91.74 -162.89 REMARK 500 ASN X 392 13.39 -60.02 REMARK 500 ILE X 395 -62.07 -94.65 REMARK 500 ILE X 398 -105.37 -62.44 REMARK 500 GLN X 399 27.53 48.45 REMARK 500 GLU X 400 51.69 -156.68 REMARK 500 PHE X 403 -149.90 68.71 REMARK 500 VAL X 404 155.02 124.25 REMARK 500 THR X 408 -55.07 -129.97 REMARK 500 LEU X 412 -0.18 -163.81 REMARK 500 SER X 413 -70.41 171.98 REMARK 500 LYS X 414 56.03 104.61 REMARK 500 ALA X 419 108.80 -167.08 REMARK 500 REMARK 500 THIS ENTRY HAS 61 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU X 212 PRO X 213 -130.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP X 85 -11.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU X 189 O REMARK 620 2 ARG X 192 O 85.2 REMARK 620 3 ASP X 194 OD1 101.9 128.9 REMARK 620 4 ASP X 197 OD1 145.2 116.4 85.7 REMARK 620 5 ASP X 197 OD2 163.3 81.0 80.0 51.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP X 314 OD1 REMARK 620 2 ASP X 314 OD2 41.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA X 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA X 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DDQ X 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DDQ X 502 DBREF 1W52 X 1 452 UNP Q95KP4 Q95KP4 1 452 SEQRES 1 X 452 LYS GLU VAL CYS TYR THR PRO LEU GLY CYS PHE SER ASP SEQRES 2 X 452 ASP LYS PRO TRP ALA GLY THR LEU GLN ARG PRO LEU LYS SEQRES 3 X 452 SER LEU PRO TRP SER PRO GLU GLU VAL ASN THR ARG PHE SEQRES 4 X 452 LEU LEU TYR THR ASN LYS ASN PRO ASP SER TYR GLN LEU SEQRES 5 X 452 ILE THR ALA ARG ASP VAL ALA THR ILE LYS SER SER ASN SEQRES 6 X 452 PHE GLN SER SER ARG LYS THR HIS PHE VAL ILE HIS GLY SEQRES 7 X 452 PHE ARG ASP ARG GLY GLU ASP SER TRP PRO SER ASP MET SEQRES 8 X 452 CYS LYS LYS ILE LEU GLN VAL GLU THR THR ASN CYS ILE SEQRES 9 X 452 SER VAL ASP TRP SER SER GLY ALA LYS ALA GLU TYR THR SEQRES 10 X 452 GLN ALA VAL GLN ASN ILE ARG ILE VAL GLY ALA GLU THR SEQRES 11 X 452 ALA TYR LEU ILE GLN GLN LEU LEU THR GLU LEU SER TYR SEQRES 12 X 452 ASN PRO GLU ASN VAL HIS ILE ILE GLY HIS SER LEU GLY SEQRES 13 X 452 ALA HIS THR ALA GLY GLU ALA GLY ARG ARG LEU GLU GLY SEQRES 14 X 452 ARG VAL GLY ARG VAL THR GLY LEU ASP PRO ALA GLU PRO SEQRES 15 X 452 CYS PHE GLN ASP ALA SER GLU GLU VAL ARG LEU ASP PRO SEQRES 16 X 452 SER ASP ALA GLN PHE VAL ASP VAL ILE HIS THR ASP ALA SEQRES 17 X 452 SER PRO MET LEU PRO SER LEU GLY PHE GLY MET SER GLN SEQRES 18 X 452 LYS VAL GLY HIS MET ASP PHE PHE PRO ASN GLY GLY LYS SEQRES 19 X 452 GLN MET PRO GLY CYS LYS ARG SER SER PHE SER THR PHE SEQRES 20 X 452 ILE ASP ILE ASN GLY ILE TRP GLN GLY ALA GLN ASP TYR SEQRES 21 X 452 LEU ALA CYS ASN HIS LEU LYS SER PHE GLU TYR TYR SER SEQRES 22 X 452 SER SER ILE LEU ASN PRO ASP GLY PHE LEU ALA TYR PRO SEQRES 23 X 452 CYS ASP SER TYR ASP LYS PHE GLN GLU ASN GLY CYS PHE SEQRES 24 X 452 PRO CYS PRO ALA GLY GLY CYS PRO LYS MET GLY HIS TYR SEQRES 25 X 452 ALA ASP GLN TYR LYS GLU LYS THR SER ALA VAL GLU GLN SEQRES 26 X 452 THR PHE PHE LEU ASN THR GLY GLU SER GLY ASP TYR THR SEQRES 27 X 452 SER TRP ARG TYR ARG VAL SER ILE THR LEU ALA GLY SER SEQRES 28 X 452 GLY LYS ALA ASN GLY TYR LEU LYS VAL THR LEU ARG GLY SEQRES 29 X 452 SER ASN GLY ASN SER LYS GLN TYR GLU ILE PHE LYS GLY SEQRES 30 X 452 SER LEU GLN PRO ASP SER SER TYR THR LEU ASP VAL ASP SEQRES 31 X 452 VAL ASN PHE ILE ILE GLY LYS ILE GLN GLU VAL LYS PHE SEQRES 32 X 452 VAL TRP ASN LYS THR VAL LEU ASN LEU SER LYS PRO GLN SEQRES 33 X 452 LEU GLY ALA SER ARG ILE THR VAL GLN SER GLY ALA ASP SEQRES 34 X 452 GLY THR GLU TYR LYS PHE CYS GLY SER GLY THR VAL GLN SEQRES 35 X 452 ASP ASN VAL GLU GLN SER LEU TYR PRO CYS HET DDQ X 501 14 HET DDQ X 502 14 HET CA X 601 1 HET CA X 602 1 HETNAM DDQ DECYLAMINE-N,N-DIMETHYL-N-OXIDE HETNAM CA CALCIUM ION FORMUL 2 DDQ 2(C12 H27 N O) FORMUL 4 CA 2(CA 2+) HELIX 1 1 SER X 31 ASN X 36 1 6 HELIX 2 2 VAL X 58 SER X 63 1 6 HELIX 3 3 SER X 86 GLN X 97 1 12 HELIX 4 4 TRP X 108 LYS X 113 1 6 HELIX 5 5 GLU X 115 SER X 142 1 28 HELIX 6 6 ASN X 144 GLU X 146 5 3 HELIX 7 7 SER X 154 LEU X 167 1 14 HELIX 8 8 ASP X 194 ALA X 198 5 5 HELIX 9 9 GLY X 232 LYS X 234 5 3 HELIX 10 10 ASP X 249 ILE X 253 5 5 HELIX 11 11 GLY X 256 ASN X 278 1 23 HELIX 12 12 PRO X 279 PHE X 282 5 4 HELIX 13 13 SER X 289 GLU X 295 1 7 HELIX 14 14 GLY X 310 TYR X 316 5 7 SHEET 1 XA 2 VAL X 3 TYR X 5 0 SHEET 2 XA 2 GLY X 9 PHE X 11 -1 O GLY X 9 N TYR X 5 SHEET 1 XB10 ASN X 46 ILE X 53 0 SHEET 2 XB10 ARG X 38 THR X 43 -1 O PHE X 39 N ILE X 53 SHEET 3 XB10 ASN X 102 ASP X 107 -1 O CYS X 103 N TYR X 42 SHEET 4 XB10 THR X 72 ILE X 76 1 O HIS X 73 N ILE X 104 SHEET 5 XB10 VAL X 148 HIS X 153 1 O HIS X 149 N PHE X 74 SHEET 6 XB10 ARG X 173 LEU X 177 1 O ARG X 173 N ILE X 150 SHEET 7 XB10 VAL X 201 ILE X 204 1 O ASP X 202 N GLY X 176 SHEET 8 XB10 MET X 226 PRO X 230 1 O MET X 226 N VAL X 203 SHEET 9 XB10 GLN X 325 LEU X 329 1 O GLN X 325 N ASP X 227 SHEET 10 XB10 TYR X 285 PRO X 286 -1 O TYR X 285 N PHE X 328 SHEET 1 XC 2 TRP X 340 VAL X 344 0 SHEET 2 XC 2 LEU X 387 VAL X 391 -1 O LEU X 387 N VAL X 344 SHEET 1 XD 2 ASN X 355 GLY X 356 0 SHEET 2 XD 2 GLY X 377 SER X 378 -1 O GLY X 377 N GLY X 356 SHEET 1 XE 2 PHE X 435 CYS X 436 0 SHEET 2 XE 2 TYR X 450 PRO X 451 -1 O TYR X 450 N CYS X 436 SSBOND 1 CYS X 4 CYS X 10 1555 1555 2.09 SSBOND 2 CYS X 92 CYS X 103 1555 1555 2.06 SSBOND 3 CYS X 239 CYS X 263 1555 1555 2.07 SSBOND 4 CYS X 287 CYS X 298 1555 1555 2.08 SSBOND 5 CYS X 301 CYS X 306 1555 1555 2.04 SSBOND 6 CYS X 436 CYS X 452 1555 1555 2.05 LINK O GLU X 189 CA CA X 602 1555 1555 2.25 LINK O ARG X 192 CA CA X 602 1555 1555 3.31 LINK OD1 ASP X 194 CA CA X 602 1555 1555 2.48 LINK OD1 ASP X 197 CA CA X 602 1555 1555 2.48 LINK OD2 ASP X 197 CA CA X 602 1555 1555 2.48 LINK OD1 ASP X 314 CA CA X 601 1555 1555 3.26 LINK OD2 ASP X 314 CA CA X 601 1555 1555 2.79 CISPEP 1 LYS X 15 PRO X 16 0 -10.03 CISPEP 2 PHE X 299 PRO X 300 0 -4.74 SITE 1 AC1 1 ASP X 314 SITE 1 AC2 4 GLU X 189 ARG X 192 ASP X 194 ASP X 197 SITE 1 AC3 3 MET X 211 LEU X 215 TRP X 254 SITE 1 AC4 4 ARG X 80 ASP X 81 TYR X 116 HIS X 265 CRYST1 128.426 128.426 85.818 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007787 0.004496 0.000000 0.00000 SCALE2 0.000000 0.008991 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011653 0.00000