HEADER TRANSFERASE 05-AUG-04 1W55 TITLE STRUCTURE OF THE BIFUNCTIONAL ISPDF FROM CAMPYLOBACTER JEJUNI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISPD/ISPF BIFUNCTIONAL ENZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE, 4- COMPND 5 DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL SYNTHASE, MEP COMPND 6 CYTIDYLYLTRANSFERASE, MCT, 2-C-METHYL-D-ERYTHRITOL 2,4- COMPND 7 CYCLODIPHOSPHATE SYNTHASE, MECPS, MECDP-SYNTHASE, METHYLERYTHRITOL 4- COMPND 8 PHOSPHATE CYTIDYLYLTRANSFERASE, METHYLERYTHRITOL 2,4-CYCLODIPHOSPHATE COMPND 9 SYNTHASE; COMPND 10 EC: 2.7.7.60, 4.6.1.12; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 197; SOURCE 4 STRAIN: JEJUNI NTCT 11168; SOURCE 5 ATCC: 33560; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS BIFUNCTIONAL ENZYME, BIOSYNTHETIC PATHWAY, ISOPRENOIDS, BIFUNCTIONAL, KEYWDS 2 NONMEVALONATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GABRIELSEN,C.S.BOND,W.N.HUNTER REVDAT 4 13-DEC-23 1W55 1 LINK REVDAT 3 24-FEB-09 1W55 1 VERSN REVDAT 2 08-DEC-04 1W55 1 JRNL REVDAT 1 04-OCT-04 1W55 0 JRNL AUTH M.GABRIELSEN,C.S.BOND,I.HALLYBURTON,S.HECHT,A.BACHER, JRNL AUTH 2 W.EISENREICH,F.ROHDICH,W.N.HUNTER JRNL TITL HEXAMERIC ASSEMBLY OF THE BIFUNCTIONAL METHYLERYTHRITOL JRNL TITL 2 2,4-CYCLODIPHOSPHATE SYNTHASE AND PROTEIN-PROTEIN JRNL TITL 3 ASSOCIATIONS IN THE DEOXY-XYLULOSE-DEPENDENT PATHWAY OF JRNL TITL 4 ISOPRENOID PRECURSOR BIOSYNTHESIS JRNL REF J.BIOL.CHEM. V. 279 52753 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15466439 JRNL DOI 10.1074/JBC.M408895200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 489834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1278 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1482 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 248 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09900 REMARK 3 B22 (A**2) : 0.09900 REMARK 3 B33 (A**2) : -0.14900 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.217 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.876 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3037 ; 0.031 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2787 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4096 ; 1.744 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6520 ; 0.989 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 467 ; 0.148 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3276 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 582 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 551 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3123 ; 0.259 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1452 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1815 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 173 ; 0.195 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.230 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 142 ; 0.349 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 51 ; 0.291 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1836 ; 1.442 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2960 ; 2.629 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1201 ; 3.844 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1135 ; 6.217 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 1W55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1290020663. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 160.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 489834 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 14.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 19.40 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRIES 1I52 AND 1GX1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35 % ETHYLENE GLYCOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.63100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.63100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.63100 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 80.63100 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.63100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 80.63100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 54.37900 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 94.18719 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 108.75800 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -80.63100 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 108.75800 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -80.63100 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 54.37900 REMARK 350 BIOMT2 6 -0.866025 -0.500000 0.000000 94.18719 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -80.63100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 PA GPP A1374 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2235 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 CATALYTIC ACTIVITY: 2-PHOSPHO-4-(CYTIDINE 5'-DIPHOSPHO)-2-C- REMARK 400 METHYL-D-ERYTHRITOL = 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE REMARK 400 + CMP. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 371 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2145 O HOH A 2245 2.15 REMARK 500 OH TYR A 365 O HOH A 2238 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 248 CB - CA - C ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 19 -139.68 -75.49 REMARK 500 ALA A 242 -149.57 58.54 REMARK 500 SER A 244 -117.92 58.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2008 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A2017 DISTANCE = 6.43 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1371 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 217 OD1 REMARK 620 2 THR A 341 OG1 92.3 REMARK 620 3 C A1372 OP3 151.6 115.5 REMARK 620 4 HOH A2226 O 87.0 86.8 99.6 REMARK 620 5 HOH A2244 O 89.3 86.6 86.7 172.3 REMARK 620 6 HOH A2245 O 77.4 164.2 74.3 104.2 81.5 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C A1372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C A1373 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GPP A1374 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1375 DBREF 1W55 A 1 371 UNP Q9PM68 ISDF_CAMJE 1 371 SEQRES 1 A 371 MET SER GLU MET SER LEU ILE MET LEU ALA ALA GLY ASN SEQRES 2 A 371 SER THR ARG PHE ASN THR LYS VAL LYS LYS GLN PHE LEU SEQRES 3 A 371 ARG LEU GLY ASN ASP PRO LEU TRP LEU TYR ALA THR LYS SEQRES 4 A 371 ASN LEU SER SER PHE TYR PRO PHE LYS LYS ILE VAL VAL SEQRES 5 A 371 THR SER SER ASN ILE THR TYR MET LYS LYS PHE THR LYS SEQRES 6 A 371 ASN TYR GLU PHE ILE GLU GLY GLY ASP THR ARG ALA GLU SEQRES 7 A 371 SER LEU LYS LYS ALA LEU GLU LEU ILE ASP SER GLU PHE SEQRES 8 A 371 VAL MET VAL SER ASP VAL ALA ARG VAL LEU VAL SER LYS SEQRES 9 A 371 ASN LEU PHE ASP ARG LEU ILE GLU ASN LEU ASP LYS ALA SEQRES 10 A 371 ASP CYS ILE THR PRO ALA LEU LYS VAL ALA ASP THR THR SEQRES 11 A 371 LEU PHE ASP ASN GLU ALA LEU GLN ARG GLU LYS ILE LYS SEQRES 12 A 371 LEU ILE GLN THR PRO GLN ILE SER LYS THR LYS LEU LEU SEQRES 13 A 371 LYS LYS ALA LEU ASP GLN ASN LEU GLU PHE THR ASP ASP SEQRES 14 A 371 SER THR ALA ILE ALA ALA MET GLY GLY LYS ILE TRP PHE SEQRES 15 A 371 VAL GLU GLY GLU GLU ASN ALA ARG LYS LEU THR PHE LYS SEQRES 16 A 371 GLU ASP LEU LYS LYS LEU ASP LEU PRO THR PRO SER PHE SEQRES 17 A 371 GLU ILE PHE THR GLY ASN GLY PHE ASP VAL HIS GLU PHE SEQRES 18 A 371 GLY GLU ASN ARG PRO LEU LEU LEU ALA GLY VAL GLN ILE SEQRES 19 A 371 HIS PRO THR MET GLY LEU LYS ALA HIS SER ASP GLY ASP SEQRES 20 A 371 VAL LEU ALA HIS SER LEU THR ASP ALA ILE LEU GLY ALA SEQRES 21 A 371 ALA GLY LEU GLY ASP ILE GLY GLU LEU TYR PRO ASP THR SEQRES 22 A 371 ASP MET LYS PHE LYS ASN ALA ASN SER MET GLU LEU LEU SEQRES 23 A 371 LYS GLN ALA TYR ASP LYS VAL ARG GLU ILE GLY PHE GLU SEQRES 24 A 371 LEU ILE ASN ILE ASP ILE CYS VAL MET ALA GLN SER PRO SEQRES 25 A 371 LYS LEU LYS ASP PHE LYS GLN ALA MET GLN SER ASN ILE SEQRES 26 A 371 ALA HIS THR LEU ASP LEU ASP GLU PHE ARG ILE ASN VAL SEQRES 27 A 371 LYS ALA THR THR THR GLU LYS LEU GLY PHE ILE GLY ARG SEQRES 28 A 371 LYS GLU GLY MET ALA VAL LEU SER SER VAL ASN LEU LYS SEQRES 29 A 371 TYR PHE ASP TRP THR ARG LEU HET MG A1371 1 HET C A1372 21 HET C A1373 21 HET GPP A1374 19 HET EDO A1375 4 HETNAM MG MAGNESIUM ION HETNAM C CYTIDINE-5'-MONOPHOSPHATE HETNAM GPP GERANYL DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG MG 2+ FORMUL 3 C 2(C9 H14 N3 O8 P) FORMUL 5 GPP C10 H20 O7 P2 FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *248(H2 O) HELIX 1 1 LYS A 22 PHE A 25 5 4 HELIX 2 2 LEU A 33 SER A 43 1 11 HELIX 3 3 ASN A 56 LYS A 62 1 7 HELIX 4 4 THR A 75 GLU A 85 1 11 HELIX 5 5 SER A 103 GLU A 112 1 10 HELIX 6 6 ASN A 113 ALA A 117 5 5 HELIX 7 7 GLN A 138 ILE A 142 5 5 HELIX 8 8 THR A 153 LEU A 160 1 8 HELIX 9 9 ASP A 168 ALA A 175 1 8 HELIX 10 10 GLU A 186 ARG A 190 5 5 HELIX 11 11 PHE A 194 LEU A 201 5 8 HELIX 12 12 ASP A 247 ALA A 261 1 15 HELIX 13 13 ASP A 265 TYR A 270 1 6 HELIX 14 14 ASN A 281 ILE A 296 1 16 HELIX 15 15 LEU A 314 ASP A 316 5 3 HELIX 16 16 PHE A 317 ASP A 330 1 14 HELIX 17 17 ASP A 332 PHE A 334 5 3 HELIX 18 18 LEU A 346 ARG A 351 1 6 SHEET 1 AA 7 GLU A 68 GLU A 71 0 SHEET 2 AA 7 ILE A 50 SER A 54 1 O ILE A 50 N GLU A 68 SHEET 3 AA 7 MET A 4 LEU A 9 1 O LEU A 6 N VAL A 51 SHEET 4 AA 7 PHE A 91 ASP A 96 1 O PHE A 91 N SER A 5 SHEET 5 AA 7 GLN A 149 LYS A 152 -1 O GLN A 149 N VAL A 94 SHEET 6 AA 7 CYS A 119 LEU A 124 -1 O ILE A 120 N ILE A 150 SHEET 7 AA 7 ILE A 180 GLU A 184 1 O TRP A 181 N THR A 121 SHEET 1 AB 7 GLU A 68 GLU A 71 0 SHEET 2 AB 7 ILE A 50 SER A 54 1 O ILE A 50 N GLU A 68 SHEET 3 AB 7 MET A 4 LEU A 9 1 O LEU A 6 N VAL A 51 SHEET 4 AB 7 PHE A 91 ASP A 96 1 O PHE A 91 N SER A 5 SHEET 5 AB 7 GLN A 149 LYS A 152 -1 O GLN A 149 N VAL A 94 SHEET 6 AB 7 CYS A 119 LEU A 124 -1 O ILE A 120 N ILE A 150 SHEET 7 AB 7 LEU A 144 ILE A 145 -1 O LEU A 144 N LEU A 124 SHEET 1 AC 2 ARG A 27 LEU A 28 0 SHEET 2 AC 2 ASP A 31 PRO A 32 -1 O ASP A 31 N LEU A 28 SHEET 1 AD 2 THR A 130 PHE A 132 0 SHEET 2 AD 2 GLU A 135 LEU A 137 -1 O GLU A 135 N PHE A 132 SHEET 1 AE 5 MET A 238 LEU A 240 0 SHEET 2 AE 5 ILE A 210 ASN A 224 -1 N GLY A 222 O GLY A 239 SHEET 3 AE 5 GLY A 354 TYR A 365 -1 O MET A 355 N HIS A 219 SHEET 4 AE 5 PHE A 298 MET A 308 -1 O GLU A 299 N LYS A 364 SHEET 5 AE 5 ILE A 336 THR A 341 1 O ASN A 337 N ILE A 305 SHEET 1 AF 2 LEU A 227 LEU A 229 0 SHEET 2 AF 2 VAL A 232 HIS A 235 -1 O VAL A 232 N LEU A 229 LINK OD1 ASP A 217 MG MG A1371 1555 1555 2.20 LINK OG1 THR A 341 MG MG A1371 3665 1555 2.28 LINK MG MG A1371 OP3 C A1372 1555 1555 1.96 LINK MG MG A1371 O HOH A2226 1555 3665 2.15 LINK MG MG A1371 O HOH A2244 1555 1555 2.03 LINK MG MG A1371 O HOH A2245 1555 1555 2.19 CISPEP 1 THR A 147 PRO A 148 0 3.43 CISPEP 2 SER A 311 PRO A 312 0 -8.72 SITE 1 AC1 6 ASP A 217 THR A 341 C A1372 HOH A2226 SITE 2 AC1 6 HOH A2244 HOH A2245 SITE 1 AC2 19 HIS A 243 ASP A 265 GLY A 267 ALA A 309 SITE 2 AC2 19 PRO A 312 LYS A 313 LEU A 314 LYS A 315 SITE 3 AC2 19 LYS A 318 ALA A 340 THR A 341 THR A 342 SITE 4 AC2 19 MG A1371 HOH A2168 HOH A2240 HOH A2241 SITE 5 AC2 19 HOH A2242 HOH A2244 HOH A2245 SITE 1 AC3 18 LEU A 9 ALA A 10 ALA A 11 THR A 53 SITE 2 AC3 18 GLY A 73 ASP A 74 THR A 75 ARG A 76 SITE 3 AC3 18 SER A 79 ASP A 96 VAL A 97 ARG A 139 SITE 4 AC3 18 LYS A 191 HOH A2048 HOH A2112 HOH A2246 SITE 5 AC3 18 HOH A2247 HOH A2248 SITE 1 AC4 6 PHE A 216 MET A 308 GLY A 347 PHE A 348 SITE 2 AC4 6 ARG A 351 HOH A2228 SITE 1 AC5 8 ASP A 96 ARG A 99 ASP A 128 THR A 129 SITE 2 AC5 8 ILE A 145 THR A 167 LYS A 191 HOH A2112 CRYST1 108.758 108.758 161.262 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009195 0.005309 0.000000 0.00000 SCALE2 0.000000 0.010617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006201 0.00000