data_1W5J # _entry.id 1W5J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1W5J PDBE EBI-20712 WWPDB D_1290020712 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1CE9 unspecified 'HELIX CAPPING IN THE GCN4 LEUCINE ZIPPER' PDB 1DGC unspecified 'GCN4 LEUCINE ZIPPER COMPLEXED WITH SPECIFIC ATF/CREB SITE DEOXYRIBONUCLEIC ACID' PDB 1ENV unspecified 'ATOMIC STRUCTURE OF THE ECTODOMAIN FROM HIV -1 GP41' PDB 1FAV unspecified 'THE STRUCTURE OF AN HIV-1 SPECIFIC CELL ENTRY INHIBITOR INCOMPLEX WITH THE HIV-1 GP41 TRIMERIC CORE' PDB 1GCL unspecified 'GCN4 LEUCINE ZIPPER CORE MUTANT P-LI' PDB 1GCM unspecified 'GCN4 LEUCINE ZIPPER CORE MUTANT P-LI' PDB 1GK6 unspecified 'HUMAN VIMENTIN COIL 2B FRAGMENT LINKED TO GCN4 LEUCINE ZIPPER (Z2B)' PDB 1GZL unspecified 'CRYSTAL STRUCTURE OF C14LINKMID/IQN17: A CROSS-LINKED INHIBITOR OF HIV-1 ENTRY BOUND TO THE GP41 HYDROPHOBIC POCKET' PDB 1IHQ unspecified 'GLYTM1BZIP: A CHIMERIC PEPTIDE MODEL OF THE N-TERMINUS OF ARAT SHORT ALPHA TROPOMYOSIN WITH THE N-TERMINUS ENCODED BYEXON 1B' PDB 1IJ0 unspecified 'COILED COIL TRIMER GCN4-PVLS SER AT BURIED D POSITION' PDB 1IJ1 unspecified 'GCN4-PVLT COILED-COIL TRIMER WITH THREONINE AT THE D(12)POSITION' PDB 1IJ2 unspecified 'GCN4-PVTL COILED-COIL TRIMER WITH THREONINE AT THE A(16)POSITION' PDB 1IJ3 unspecified 'GCN4-PVSL COILED-COIL TRIMER WITH SERINE AT THE A(16)POSITION' PDB 1KQL unspecified 'CRYSTAL STRUCTURE OF THE C-TERMINAL REGION OF STRIATEDMUSCLE ALPHA-TROPOMYOSIN AT 2.7 ANGSTROM RESOLUTION' PDB 1LD4 unspecified 'PLACEMENT OF THE STRUCTURAL PROTEINS IN SINDBIS VIRUS' PDB 1LLM unspecified 'CRYSTAL STRUCTURE OF A ZIF23-GCN4 CHIMERA BOUND TO DNA' PDB 1NKN unspecified 'VISUALIZING AN UNSTABLE COILED COIL: THE CRYSTAL STRUCTUREOF AN N-TERMINAL SEGMENT OF THE SCALLOP MYOSIN ROD' PDB 1PIQ unspecified 'CRYSTAL STRUCTURE OF GCN4-PIQ, A TRIMERIC COILED COIL WITH BURIED POLAR RESIDUES' PDB 1RB1 unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A TRIGONAL AUTOMATICSOLUTION' PDB 1RB4 unspecified 'ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TETRAGONAL AUTOMATIC SOLUTION' PDB 1RB5 unspecified 'ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TRIGONAL FORM' PDB 1RB6 unspecified 'ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TETRAGONAL FORM' PDB 1SWI unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A COMPLEXED WITH BENZENE' PDB 1TMZ unspecified 'TMZIP: A CHIMERIC PEPTIDE MODEL OF THE N- TERMINUS OF ALPHA TROPOMYOSIN, NMR, 15 STRUCTURES' PDB 1M6T unspecified 'CRYSTAL STRUCTURE OF B562RIL, A REDESIGNED FOUR HELIX BUNDLE' PDB 1UNT unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNU unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNV unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNW unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNX unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNY unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UNZ unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO0 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO1 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO2 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO3 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO4 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1UO5 unspecified 'STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES' PDB 1VZL unspecified 'AN ANTI-PARALLEL FOUR HELIX BUNDLE MUTANT PLI-E20C' PDB 1YSA unspecified 'GCN4 (BASIC REGION, LEUCINE ZIPPER) COMPLEX WITH AP-1 DEOXYRIBONUCLEIC ACID' PDB 1ZII unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE DIMERIC STATE' PDB 1ZIJ unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE TRIMERIC STATE' PDB 1ZIK unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16LYS IN THE DIMERIC STATE' PDB 1ZIL unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE DIMERIC STATE' PDB 1ZIM unspecified 'GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE TRIMERIC STATE' PDB 1ZTA unspecified 'LEUCINE ZIPPER MONOMER (NMR, 20 STRUCTURES)' PDB 2DGC unspecified 'GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DEOXYRIBONUCLEIC ACID' PDB 2ZTA unspecified 'GCN4 LEUCINE ZIPPER' PDB 1W5G unspecified 'AN ANTI-PARALLEL FOUR HELIX BUNDLE.' PDB 1W5H unspecified 'AN ANTI-PARALLEL FOUR HELIX BUNDLE.' PDB 1W5I unspecified 'ABA DOES NOT AFFECT TOPOLOGY OF PLI.' PDB 1W5K unspecified 'AN ANTI-PARALLEL FOUR HELIX BUNDLE' PDB 1W5L unspecified 'AN ANTI-PARALLEL TO PARALLEL SWITCH.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1W5J _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2004-08-07 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yadav, M.K.' 1 'Leman, L.J.' 2 'Stout, C.D.' 3 'Ghadiri, M.R.' 4 # _citation.id primary _citation.title ;Coiled Coils at the Edge of Configurational Heterogeneity. Structural Analyses of Parallel and Antiparallel Homotetrameric Coiled Coils Reveal Configurational Sensitivity to a Single Solvent-Exposed Amino Acid Substitution. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 45 _citation.page_first 4463 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16584182 _citation.pdbx_database_id_DOI 10.1021/BI060092Q # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yadav, M.K.' 1 ? primary 'Leman, L.J.' 2 ? primary 'Price, D.J.' 3 ? primary 'Brooks, C.L.' 4 ? primary 'Stout, C.D.' 5 ? primary 'Ghadiri, M.R.' 6 ? # _cell.entry_id 1W5J _cell.length_a 33.691 _cell.length_b 37.192 _cell.length_c 103.991 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1W5J _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'GENERAL CONTROL PROTEIN GCN4' 4294.042 4 ? YES ? ? 2 water nat water 18.015 11 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'AMINO ACID BIOSYNTHESIS REGULATORY PROTEIN, PLI KYHC' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(TYZ)RMRQIEDRLEEILSKLYHICNELARIRRLLGER' _entity_poly.pdbx_seq_one_letter_code_can XRMRQIEDRLEEILSKLYHICNELARIRRLLGER _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYZ n 1 2 ARG n 1 3 MET n 1 4 ARG n 1 5 GLN n 1 6 ILE n 1 7 GLU n 1 8 ASP n 1 9 ARG n 1 10 LEU n 1 11 GLU n 1 12 GLU n 1 13 ILE n 1 14 LEU n 1 15 SER n 1 16 LYS n 1 17 LEU n 1 18 TYR n 1 19 HIS n 1 20 ILE n 1 21 CYS n 1 22 ASN n 1 23 GLU n 1 24 LEU n 1 25 ALA n 1 26 ARG n 1 27 ILE n 1 28 ARG n 1 29 ARG n 1 30 LEU n 1 31 LEU n 1 32 GLY n 1 33 GLU n 1 34 ARG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'SACCHAROMYCES CEREVISIAE' _pdbx_entity_src_syn.organism_common_name ;BAKER'S YEAST ; _pdbx_entity_src_syn.ncbi_taxonomy_id 4932 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1W5J 1 ? ? 1W5J ? 2 UNP GCN4_YEAST 1 ? ? P03069 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1W5J A 1 ? 1 ? 1W5J 1 ? 1 ? 1 1 2 2 1W5J A 2 ? 34 ? P03069 249 ? 281 ? 2 34 3 1 1W5J B 1 ? 1 ? 1W5J 0 ? 0 ? 0 0 4 2 1W5J B 2 ? 34 ? P03069 249 ? 281 ? 1 33 5 1 1W5J C 1 ? 1 ? 1W5J 0 ? 0 ? 0 0 6 2 1W5J C 2 ? 34 ? P03069 249 ? 281 ? 1 33 7 1 1W5J D 1 ? 1 ? 1W5J 0 ? 0 ? 0 0 8 2 1W5J D 2 ? 34 ? P03069 249 ? 281 ? 1 33 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1W5J ARG A 4 ? UNP P03069 LYS 251 'engineered mutation' 4 1 1 1W5J ILE A 6 ? UNP P03069 LEU 253 conflict 6 2 1 1W5J ARG A 9 ? UNP P03069 LYS 256 'engineered mutation' 9 3 1 1W5J LEU A 10 ? UNP P03069 VAL 257 conflict 10 4 1 1W5J ILE A 13 ? UNP P03069 LEU 260 conflict 13 5 1 1W5J LYS A 16 ? UNP P03069 ASN 264 conflict 16 6 1 1W5J ILE A 20 ? UNP P03069 LEU 267 conflict 20 7 1 1W5J CYS A 21 ? UNP P03069 GLU 268 'engineered mutation' 21 8 1 1W5J LEU A 24 ? UNP P03069 VAL 271 conflict 24 9 1 1W5J ILE A 27 ? UNP P03069 LEU 274 conflict 27 10 1 1W5J ARG A 28 ? UNP P03069 LYS 275 'engineered mutation' 28 11 1 1W5J ARG A 29 ? UNP P03069 LYS 276 'engineered mutation' 29 12 1 1W5J LEU A 31 ? UNP P03069 VAL 278 conflict 31 13 3 1W5J ARG B 4 ? UNP P03069 LYS 251 'engineered mutation' 3 14 3 1W5J ILE B 6 ? UNP P03069 LEU 253 conflict 5 15 3 1W5J ARG B 9 ? UNP P03069 LYS 256 'engineered mutation' 8 16 3 1W5J LEU B 10 ? UNP P03069 VAL 257 conflict 9 17 3 1W5J ILE B 13 ? UNP P03069 LEU 260 conflict 12 18 3 1W5J LYS B 16 ? UNP P03069 ASN 264 conflict 15 19 3 1W5J ILE B 20 ? UNP P03069 LEU 267 conflict 19 20 3 1W5J CYS B 21 ? UNP P03069 GLU 268 'engineered mutation' 20 21 3 1W5J LEU B 24 ? UNP P03069 VAL 271 conflict 23 22 3 1W5J ILE B 27 ? UNP P03069 LEU 274 conflict 26 23 3 1W5J ARG B 28 ? UNP P03069 LYS 275 'engineered mutation' 27 24 3 1W5J ARG B 29 ? UNP P03069 LYS 276 'engineered mutation' 28 25 3 1W5J LEU B 31 ? UNP P03069 VAL 278 conflict 30 26 5 1W5J ARG C 4 ? UNP P03069 LYS 251 'engineered mutation' 3 27 5 1W5J ILE C 6 ? UNP P03069 LEU 253 conflict 5 28 5 1W5J ARG C 9 ? UNP P03069 LYS 256 'engineered mutation' 8 29 5 1W5J LEU C 10 ? UNP P03069 VAL 257 conflict 9 30 5 1W5J ILE C 13 ? UNP P03069 LEU 260 conflict 12 31 5 1W5J LYS C 16 ? UNP P03069 ASN 264 conflict 15 32 5 1W5J ILE C 20 ? UNP P03069 LEU 267 conflict 19 33 5 1W5J CYS C 21 ? UNP P03069 GLU 268 'engineered mutation' 20 34 5 1W5J LEU C 24 ? UNP P03069 VAL 271 conflict 23 35 5 1W5J ILE C 27 ? UNP P03069 LEU 274 conflict 26 36 5 1W5J ARG C 28 ? UNP P03069 LYS 275 'engineered mutation' 27 37 5 1W5J ARG C 29 ? UNP P03069 LYS 276 'engineered mutation' 28 38 5 1W5J LEU C 31 ? UNP P03069 VAL 278 conflict 30 39 7 1W5J ARG D 4 ? UNP P03069 LYS 251 'engineered mutation' 3 40 7 1W5J ILE D 6 ? UNP P03069 LEU 253 conflict 5 41 7 1W5J ARG D 9 ? UNP P03069 LYS 256 'engineered mutation' 8 42 7 1W5J LEU D 10 ? UNP P03069 VAL 257 conflict 9 43 7 1W5J ILE D 13 ? UNP P03069 LEU 260 conflict 12 44 7 1W5J LYS D 16 ? UNP P03069 ASN 264 conflict 15 45 7 1W5J ILE D 20 ? UNP P03069 LEU 267 conflict 19 46 7 1W5J CYS D 21 ? UNP P03069 GLU 268 'engineered mutation' 20 47 7 1W5J LEU D 24 ? UNP P03069 VAL 271 conflict 23 48 7 1W5J ILE D 27 ? UNP P03069 LEU 274 conflict 26 49 7 1W5J ARG D 28 ? UNP P03069 LYS 275 'engineered mutation' 27 50 7 1W5J ARG D 29 ? UNP P03069 LYS 276 'engineered mutation' 28 51 7 1W5J LEU D 31 ? UNP P03069 VAL 278 conflict 30 52 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 TYZ non-polymer . 'PARA ACETAMIDO BENZOIC ACID' ? 'C9 H9 N O3' 179.173 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1W5J _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2 _exptl_crystal.density_percent_sol 39 _exptl_crystal.description 'BEAM WAS INADVERTENTLY ALIGNED TO CU K BETA EDGE.' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.60 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;HANGING DROP, 1 UL OF 10 MG/ML PEPTIDE IN WATER TO 1UL OF 0.07M TRI-SODIUM CITRATE DIHYDRATE PH 5.6 0.7M AMMONIUM DIHYDROGEN PHOSPHATE %30 V/V GLYCEROL, HAMPTON CRYSTAL SCREEN CRYO NUMBER 11 ; # _diffrn.id 1 _diffrn.ambient_temp 93.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2003-03-19 _diffrn_detector.details CONFOCAL # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.3922 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.3922 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1W5J _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 52.000 _reflns.d_resolution_high 2.200 _reflns.number_obs 7116 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.07000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.7000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.150 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs 0.16000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 10.700 _reflns_shell.pdbx_redundancy 3.75 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1W5J _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6718 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.60 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 99.3 _refine.ls_R_factor_obs 0.231 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.228 _refine.ls_R_factor_R_free 0.285 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 330 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.919 _refine.correlation_coeff_Fo_to_Fc_free 0.894 _refine.B_iso_mean 32.90 _refine.aniso_B[1][1] 0.12000 _refine.aniso_B[2][2] 0.15000 _refine.aniso_B[3][3] -0.27000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.361 _refine.pdbx_overall_ESU_R_Free 0.261 _refine.overall_SU_ML 0.168 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.478 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1093 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 11 _refine_hist.number_atoms_total 1104 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 18.60 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.038 0.021 ? 1114 'X-RAY DIFFRACTION' ? r_bond_other_d 0.008 0.020 ? 1116 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.349 2.016 ? 1479 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.147 3.000 ? 2551 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.145 5.000 ? 132 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.177 0.200 ? 168 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.020 ? 1215 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.006 0.020 ? 239 'X-RAY DIFFRACTION' ? r_nbd_refined 0.251 0.200 ? 260 'X-RAY DIFFRACTION' ? r_nbd_other 0.278 0.200 ? 1207 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.099 0.200 ? 677 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.225 0.200 ? 15 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.255 0.200 ? 25 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.347 0.200 ? 107 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.453 0.200 ? 6 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.603 1.500 ? 672 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.517 2.000 ? 1071 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 4.282 3.000 ? 442 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 6.878 4.500 ? 408 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.26 _refine_ls_shell.number_reflns_R_work 460 _refine_ls_shell.R_factor_R_work 0.1880 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3040 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 27 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1W5J _struct.title 'AN ANTI-PARALLEL FOUR HELIX BUNDLE' _struct.pdbx_descriptor 'GENERAL CONTROL PROTEIN GCN4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1W5J _struct_keywords.pdbx_keywords 'FOUR HELIX BUNDLE' _struct_keywords.text 'FOUR HELIX BUNDLE, ANTIPARALLEL FOUR HELIX BUNDLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 2 ? GLU A 33 ? ARG A 2 GLU A 33 1 ? 32 HELX_P HELX_P2 2 ARG B 2 ? ARG B 34 ? ARG B 1 ARG B 33 1 ? 33 HELX_P HELX_P3 3 ARG C 2 ? GLU C 33 ? ARG C 1 GLU C 32 1 ? 32 HELX_P HELX_P4 4 ARG D 2 ? GLU D 33 ? ARG D 1 GLU D 32 1 ? 32 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale one ? A TYZ 1 O1 ? ? ? 1_555 A ARG 2 N ? ? A TYZ 1 A ARG 2 1_555 ? ? ? ? ? ? ? 1.825 ? covale2 covale both ? A TYZ 1 C7 ? ? ? 1_555 A ARG 2 N ? ? A TYZ 1 A ARG 2 1_555 ? ? ? ? ? ? ? 1.314 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1W5J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1W5J _atom_sites.fract_transf_matrix[1][1] 0.029682 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026888 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009616 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYZ 1 1 1 TYZ TYZ A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 TYR 18 18 18 TYR TYR A . n A 1 19 HIS 19 19 19 HIS HIS A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ARG 34 34 34 ARG ARG A . n B 1 1 TYZ 1 0 ? ? ? B . n B 1 2 ARG 2 1 1 ARG ARG B . n B 1 3 MET 3 2 2 MET MET B . n B 1 4 ARG 4 3 3 ARG ARG B . n B 1 5 GLN 5 4 4 GLN GLN B . n B 1 6 ILE 6 5 5 ILE ILE B . n B 1 7 GLU 7 6 6 GLU GLU B . n B 1 8 ASP 8 7 7 ASP ASP B . n B 1 9 ARG 9 8 8 ARG ARG B . n B 1 10 LEU 10 9 9 LEU LEU B . n B 1 11 GLU 11 10 10 GLU GLU B . n B 1 12 GLU 12 11 11 GLU GLU B . n B 1 13 ILE 13 12 12 ILE ILE B . n B 1 14 LEU 14 13 13 LEU LEU B . n B 1 15 SER 15 14 14 SER SER B . n B 1 16 LYS 16 15 15 LYS LYS B . n B 1 17 LEU 17 16 16 LEU LEU B . n B 1 18 TYR 18 17 17 TYR TYR B . n B 1 19 HIS 19 18 18 HIS HIS B . n B 1 20 ILE 20 19 19 ILE ILE B . n B 1 21 CYS 21 20 20 CYS CYS B . n B 1 22 ASN 22 21 21 ASN ASN B . n B 1 23 GLU 23 22 22 GLU GLU B . n B 1 24 LEU 24 23 23 LEU LEU B . n B 1 25 ALA 25 24 24 ALA ALA B . n B 1 26 ARG 26 25 25 ARG ARG B . n B 1 27 ILE 27 26 26 ILE ILE B . n B 1 28 ARG 28 27 27 ARG ARG B . n B 1 29 ARG 29 28 28 ARG ARG B . n B 1 30 LEU 30 29 29 LEU LEU B . n B 1 31 LEU 31 30 30 LEU LEU B . n B 1 32 GLY 32 31 31 GLY GLY B . n B 1 33 GLU 33 32 32 GLU GLU B . n B 1 34 ARG 34 33 33 ARG ARG B . n C 1 1 TYZ 1 0 ? ? ? C . n C 1 2 ARG 2 1 1 ARG ARG C . n C 1 3 MET 3 2 2 MET MET C . n C 1 4 ARG 4 3 3 ARG ARG C . n C 1 5 GLN 5 4 4 GLN GLN C . n C 1 6 ILE 6 5 5 ILE ILE C . n C 1 7 GLU 7 6 6 GLU GLU C . n C 1 8 ASP 8 7 7 ASP ASP C . n C 1 9 ARG 9 8 8 ARG ARG C . n C 1 10 LEU 10 9 9 LEU LEU C . n C 1 11 GLU 11 10 10 GLU GLU C . n C 1 12 GLU 12 11 11 GLU GLU C . n C 1 13 ILE 13 12 12 ILE ILE C . n C 1 14 LEU 14 13 13 LEU LEU C . n C 1 15 SER 15 14 14 SER SER C . n C 1 16 LYS 16 15 15 LYS LYS C . n C 1 17 LEU 17 16 16 LEU LEU C . n C 1 18 TYR 18 17 17 TYR TYR C . n C 1 19 HIS 19 18 18 HIS HIS C . n C 1 20 ILE 20 19 19 ILE ILE C . n C 1 21 CYS 21 20 20 CYS CYS C . n C 1 22 ASN 22 21 21 ASN ASN C . n C 1 23 GLU 23 22 22 GLU GLU C . n C 1 24 LEU 24 23 23 LEU LEU C . n C 1 25 ALA 25 24 24 ALA ALA C . n C 1 26 ARG 26 25 25 ARG ARG C . n C 1 27 ILE 27 26 26 ILE ILE C . n C 1 28 ARG 28 27 27 ARG ARG C . n C 1 29 ARG 29 28 28 ARG ARG C . n C 1 30 LEU 30 29 29 LEU LEU C . n C 1 31 LEU 31 30 30 LEU LEU C . n C 1 32 GLY 32 31 31 GLY GLY C . n C 1 33 GLU 33 32 32 GLU GLU C . n C 1 34 ARG 34 33 33 ARG ARG C . n D 1 1 TYZ 1 0 ? ? ? D . n D 1 2 ARG 2 1 1 ARG ARG D . n D 1 3 MET 3 2 2 MET MET D . n D 1 4 ARG 4 3 3 ARG ARG D . n D 1 5 GLN 5 4 4 GLN GLN D . n D 1 6 ILE 6 5 5 ILE ILE D . n D 1 7 GLU 7 6 6 GLU GLU D . n D 1 8 ASP 8 7 7 ASP ASP D . n D 1 9 ARG 9 8 8 ARG ARG D . n D 1 10 LEU 10 9 9 LEU LEU D . n D 1 11 GLU 11 10 10 GLU GLU D . n D 1 12 GLU 12 11 11 GLU GLU D . n D 1 13 ILE 13 12 12 ILE ILE D . n D 1 14 LEU 14 13 13 LEU LEU D . n D 1 15 SER 15 14 14 SER SER D . n D 1 16 LYS 16 15 15 LYS LYS D . n D 1 17 LEU 17 16 16 LEU LEU D . n D 1 18 TYR 18 17 17 TYR TYR D . n D 1 19 HIS 19 18 18 HIS HIS D . n D 1 20 ILE 20 19 19 ILE ILE D . n D 1 21 CYS 21 20 20 CYS CYS D . n D 1 22 ASN 22 21 21 ASN ASN D . n D 1 23 GLU 23 22 22 GLU GLU D . n D 1 24 LEU 24 23 23 LEU LEU D . n D 1 25 ALA 25 24 24 ALA ALA D . n D 1 26 ARG 26 25 25 ARG ARG D . n D 1 27 ILE 27 26 26 ILE ILE D . n D 1 28 ARG 28 27 27 ARG ARG D . n D 1 29 ARG 29 28 28 ARG ARG D . n D 1 30 LEU 30 29 29 LEU LEU D . n D 1 31 LEU 31 30 30 LEU LEU D . n D 1 32 GLY 32 31 31 GLY GLY D . n D 1 33 GLU 33 32 32 GLU GLU D . n D 1 34 ARG 34 33 33 ARG ARG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 2001 2001 HOH HOH A . E 2 HOH 2 2002 2002 HOH HOH A . E 2 HOH 3 2003 2003 HOH HOH A . F 2 HOH 1 2001 2001 HOH HOH B . F 2 HOH 2 2002 2002 HOH HOH B . F 2 HOH 3 2003 2003 HOH HOH B . G 2 HOH 1 2001 2001 HOH HOH C . G 2 HOH 2 2002 2002 HOH HOH C . G 2 HOH 3 2003 2003 HOH HOH C . H 2 HOH 1 2001 2001 HOH HOH D . H 2 HOH 2 2002 2002 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS tetrameric 4 2 author_and_software_defined_assembly PQS tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,E,F 2 1,2 C,D,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 33.6910000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-09-24 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_PDB_rev 2 4 'Structure model' database_PDB_rev_record 3 4 'Structure model' exptl_crystal_grow 4 4 'Structure model' pdbx_database_proc 5 4 'Structure model' pdbx_database_status 6 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.method' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 CrystalClear 'data reduction' '(MSC/RIGAKU)' ? 2 CrystalClear 'data scaling' '(MSC/RIGAKU)' ? 3 MOLREP phasing . ? 4 # _pdbx_entry_details.entry_id 1W5J _pdbx_entry_details.compound_details ;ENGINEERED MUTATION IN CHAINS A, B, C, D: ARG 251 TO LYS ENGINEERED MUTATION IN CHAINS A, B, C, D: ARG 256 TO LYS ENGINEERED MUTATION IN CHAINS A, B, C, D: CYS 268 TO GLU ENGINEERED MUTATION IN CHAINS A, B, C, D: ARG 275 TO LYS ENGINEERED MUTATION IN CHAINS A, B, C, D: ARG 276 TO LYS ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2003 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2003 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_655 _pdbx_validate_symm_contact.dist 1.82 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG B ARG 1 ? ? CD B ARG 1 ? ? 1.699 1.515 0.184 0.025 N 2 1 CZ B ARG 28 ? ? NH2 B ARG 28 ? ? 1.246 1.326 -0.080 0.013 N 3 1 CD C GLU 6 ? ? OE2 C GLU 6 ? ? 1.178 1.252 -0.074 0.011 N 4 1 CD C GLU 22 ? ? OE1 C GLU 22 ? ? 1.323 1.252 0.071 0.011 N 5 1 CZ D TYR 17 ? ? CE2 D TYR 17 ? ? 1.490 1.381 0.109 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 9 ? ? CZ A ARG 9 ? ? NH2 A ARG 9 ? ? 123.46 120.30 3.16 0.50 N 2 1 CB B ASP 7 ? ? CG B ASP 7 ? ? OD1 B ASP 7 ? ? 125.03 118.30 6.73 0.90 N 3 1 NE B ARG 25 ? ? CZ B ARG 25 ? ? NH1 B ARG 25 ? ? 124.17 120.30 3.87 0.50 N 4 1 NE B ARG 27 ? ? CZ B ARG 27 ? ? NH1 B ARG 27 ? ? 116.19 120.30 -4.11 0.50 N 5 1 NE B ARG 27 ? ? CZ B ARG 27 ? ? NH2 B ARG 27 ? ? 124.58 120.30 4.28 0.50 N 6 1 NE B ARG 33 ? ? CZ B ARG 33 ? ? NH1 B ARG 33 ? ? 116.35 120.30 -3.95 0.50 N 7 1 NE C ARG 1 ? ? CZ C ARG 1 ? ? NH1 C ARG 1 ? ? 124.00 120.30 3.70 0.50 N 8 1 NE C ARG 1 ? ? CZ C ARG 1 ? ? NH2 C ARG 1 ? ? 116.94 120.30 -3.36 0.50 N 9 1 CB C ASP 7 ? ? CG C ASP 7 ? ? OD2 C ASP 7 ? ? 124.10 118.30 5.80 0.90 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 29 ? CD ? A ARG 29 CD 2 1 Y 1 A ARG 29 ? NE ? A ARG 29 NE 3 1 Y 1 A ARG 29 ? CZ ? A ARG 29 CZ 4 1 Y 1 A ARG 29 ? NH1 ? A ARG 29 NH1 5 1 Y 1 A ARG 29 ? NH2 ? A ARG 29 NH2 6 1 Y 1 B ARG 1 ? NE ? B ARG 2 NE 7 1 Y 1 B ARG 1 ? CZ ? B ARG 2 CZ 8 1 Y 1 B ARG 1 ? NH1 ? B ARG 2 NH1 9 1 Y 1 B ARG 1 ? NH2 ? B ARG 2 NH2 10 1 Y 1 B ARG 3 ? CG ? B ARG 4 CG 11 1 Y 1 B ARG 3 ? CD ? B ARG 4 CD 12 1 Y 1 B ARG 3 ? NE ? B ARG 4 NE 13 1 Y 1 B ARG 3 ? CZ ? B ARG 4 CZ 14 1 Y 1 B ARG 3 ? NH1 ? B ARG 4 NH1 15 1 Y 1 B ARG 3 ? NH2 ? B ARG 4 NH2 16 1 Y 1 B HIS 18 ? ND1 ? B HIS 19 ND1 17 1 Y 1 B HIS 18 ? CD2 ? B HIS 19 CD2 18 1 Y 1 B HIS 18 ? CE1 ? B HIS 19 CE1 19 1 Y 1 B HIS 18 ? NE2 ? B HIS 19 NE2 20 1 Y 1 B GLU 22 ? CD ? B GLU 23 CD 21 1 Y 1 B GLU 22 ? OE1 ? B GLU 23 OE1 22 1 Y 1 B GLU 22 ? OE2 ? B GLU 23 OE2 23 1 Y 1 B GLU 32 ? CD ? B GLU 33 CD 24 1 Y 1 B GLU 32 ? OE1 ? B GLU 33 OE1 25 1 Y 1 B GLU 32 ? OE2 ? B GLU 33 OE2 26 1 Y 1 C ARG 3 ? CD ? C ARG 4 CD 27 1 Y 1 C ARG 3 ? NE ? C ARG 4 NE 28 1 Y 1 C ARG 3 ? CZ ? C ARG 4 CZ 29 1 Y 1 C ARG 3 ? NH1 ? C ARG 4 NH1 30 1 Y 1 C ARG 3 ? NH2 ? C ARG 4 NH2 31 1 Y 1 C GLU 11 ? CG ? C GLU 12 CG 32 1 Y 1 C GLU 11 ? CD ? C GLU 12 CD 33 1 Y 1 C GLU 11 ? OE1 ? C GLU 12 OE1 34 1 Y 1 C GLU 11 ? OE2 ? C GLU 12 OE2 35 1 Y 1 C LYS 15 ? CE ? C LYS 16 CE 36 1 Y 1 C LYS 15 ? NZ ? C LYS 16 NZ 37 1 Y 1 C ARG 28 ? CD ? C ARG 29 CD 38 1 Y 1 C ARG 28 ? NE ? C ARG 29 NE 39 1 Y 1 C ARG 28 ? CZ ? C ARG 29 CZ 40 1 Y 1 C ARG 28 ? NH1 ? C ARG 29 NH1 41 1 Y 1 C ARG 28 ? NH2 ? C ARG 29 NH2 42 1 Y 1 C LEU 29 ? CD1 ? C LEU 30 CD1 43 1 Y 1 C LEU 29 ? CD2 ? C LEU 30 CD2 44 1 Y 1 D ARG 1 ? CB ? D ARG 2 CB 45 1 Y 1 D ARG 1 ? CG ? D ARG 2 CG 46 1 Y 1 D ARG 1 ? CD ? D ARG 2 CD 47 1 Y 1 D ARG 1 ? NE ? D ARG 2 NE 48 1 Y 1 D ARG 1 ? CZ ? D ARG 2 CZ 49 1 Y 1 D ARG 1 ? NH1 ? D ARG 2 NH1 50 1 Y 1 D ARG 1 ? NH2 ? D ARG 2 NH2 51 1 Y 1 D ARG 3 ? CG ? D ARG 4 CG 52 1 Y 1 D ARG 3 ? CD ? D ARG 4 CD 53 1 Y 1 D ARG 3 ? NE ? D ARG 4 NE 54 1 Y 1 D ARG 3 ? CZ ? D ARG 4 CZ 55 1 Y 1 D ARG 3 ? NH1 ? D ARG 4 NH1 56 1 Y 1 D ARG 3 ? NH2 ? D ARG 4 NH2 57 1 Y 1 D GLN 4 ? CD ? D GLN 5 CD 58 1 Y 1 D GLN 4 ? OE1 ? D GLN 5 OE1 59 1 Y 1 D GLN 4 ? NE2 ? D GLN 5 NE2 60 1 Y 1 D ARG 8 ? CD ? D ARG 9 CD 61 1 Y 1 D ARG 8 ? NE ? D ARG 9 NE 62 1 Y 1 D ARG 8 ? CZ ? D ARG 9 CZ 63 1 Y 1 D ARG 8 ? NH1 ? D ARG 9 NH1 64 1 Y 1 D ARG 8 ? NH2 ? D ARG 9 NH2 65 1 Y 1 D ARG 27 ? NE ? D ARG 28 NE 66 1 Y 1 D ARG 27 ? CZ ? D ARG 28 CZ 67 1 Y 1 D ARG 27 ? NH1 ? D ARG 28 NH1 68 1 Y 1 D ARG 27 ? NH2 ? D ARG 28 NH2 69 1 Y 1 D GLU 32 ? CD ? D GLU 33 CD 70 1 Y 1 D GLU 32 ? OE1 ? D GLU 33 OE1 71 1 Y 1 D GLU 32 ? OE2 ? D GLU 33 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B TYZ 0 ? B TYZ 1 2 1 Y 1 C TYZ 0 ? C TYZ 1 3 1 Y 1 D TYZ 0 ? D TYZ 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #