HEADER TRANSFERASE 30-AUG-04 1W77 TITLE 2C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE (ISPD) FROM TITLE 2 ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CYTIDYLTRANSFERASE DOMAIN, RESIDUES 76-302; COMPND 5 SYNONYM: 4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL SYNTHASE, PUTATIVE COMPND 6 SUGAR NUCLEOTIDE PHOSPHORYLASE; COMPND 7 EC: 2.7.7.60; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: CHLOROPLAST TARGETING SEQUENCE REMOVED, COMPOUND COMPND 11 STARTS AT RESIDUE 75 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15(PREP4); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNCO113 KEYWDS PLANTHERBICIDE, CYTIDYLYLTRANSFERASE, ARABIDOPSIS THALIANA, NON- KEYWDS 2 MEVALONATE PATHWAY, ISOPRENOID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GABRIELSEN,J.KAISER,F.ROHDICH,W.EISENREICH,A.BACHER,C.S.BOND, AUTHOR 2 W.N.HUNTER REVDAT 3 13-DEC-23 1W77 1 LINK REVDAT 2 24-FEB-09 1W77 1 VERSN REVDAT 1 21-FEB-06 1W77 0 JRNL AUTH M.GABRIELSEN,J.KAISER,F.ROHDICH,W.EISENREICH,R.LAUPITZ, JRNL AUTH 2 A.BACHER,C.S.BOND,W.N.HUNTER JRNL TITL THE CRYSTAL STRUCTURE OF A PLANT 2C-METHYL-D-ERYTHRITOL JRNL TITL 2 4-PHOSPHATE CYTIDYLYLTRANSFERASE EXHIBITS A DISTINCT JRNL TITL 3 QUATERNARY STRUCTURE COMPARED TO BACTERIAL HOMOLOGUES AND A JRNL TITL 4 POSSIBLE ROLE IN FEEDBACK REGULATION FOR CYTIDINE JRNL TITL 5 MONOPHOSPHATE. JRNL REF FEBS J. V. 273 1065 2006 JRNL REFN ISSN 1742-464X JRNL PMID 16478479 JRNL DOI 10.1111/J.1742-4658.2006.05133.X REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.349 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 833 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1091 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.459 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1689 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2295 ; 1.652 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 208 ; 9.782 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 68 ;32.588 ;25.882 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 294 ;21.323 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;21.091 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 276 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1228 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 888 ; 0.298 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1135 ; 0.330 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 151 ; 0.299 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 89 ; 0.324 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.269 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1083 ; 9.567 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1723 ;11.302 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 675 ;16.556 ;10.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 572 ;18.780 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1W77 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1290020919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 160.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : SI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16508 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 16.90 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BEAST REMARK 200 STARTING MODEL: PDB ENTRY 1I52 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.05 M CADMIUM REMARK 280 SULFATE, 1 M SODIUM ACETATE, 0.04 COPPER(II) CHLORIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 37.24800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 21.50514 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 74.34200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 37.24800 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 21.50514 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 74.34200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 37.24800 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 21.50514 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 74.34200 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 37.24800 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 21.50514 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 74.34200 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 37.24800 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 21.50514 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 74.34200 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 37.24800 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 21.50514 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 74.34200 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 43.01029 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 148.68400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 43.01029 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 148.68400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 43.01029 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 148.68400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 43.01029 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 148.68400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 43.01029 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 148.68400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 43.01029 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 148.68400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 74.49600 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 43.01029 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -74.34200 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED MUTATION LYS 75 MET REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 88 REMARK 465 GLY A 89 REMARK 465 LYS A 90 REMARK 465 ARG A 91 REMARK 465 MET A 92 REMARK 465 LYS A 93 REMARK 465 MET A 94 REMARK 465 LYS A 224 REMARK 465 THR A 225 REMARK 465 LEU A 226 REMARK 465 ASP A 227 REMARK 465 ARG A 228 REMARK 465 LYS A 229 REMARK 465 ASP A 261 REMARK 465 ASP A 301 REMARK 465 SER A 302 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 LEU A 257 CG CD1 CD2 REMARK 470 LEU A 292 CG CD1 CD2 REMARK 470 ARG A 296 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LYS A 270 O HOH A 2148 1.68 REMARK 500 OE1 GLU A 138 OE1 GLU A 141 1.72 REMARK 500 OD1 ASN A 171 O HOH A 2063 1.85 REMARK 500 O HOH A 2146 O HOH A 2149 1.98 REMARK 500 O TYR A 162 NE2 GLN A 166 2.11 REMARK 500 O HOH A 2050 O HOH A 2102 2.15 REMARK 500 O HOH A 2044 O HOH A 2084 2.15 REMARK 500 OD2 ASP A 169 O HOH A 2061 2.16 REMARK 500 OG SER A 220 O HOH A 2119 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2087 O HOH A 2149 2665 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 169 CB ASP A 169 CG 0.147 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 130 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 147 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 159 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 169 CB - CG - OD2 ANGL. DEV. = 12.6 DEGREES REMARK 500 ASP A 189 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 290 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 101 124.69 -39.55 REMARK 500 LEU A 104 -84.53 56.84 REMARK 500 PHE A 132 -32.63 -34.91 REMARK 500 SER A 143 41.04 -91.54 REMARK 500 SER A 180 -37.21 -38.91 REMARK 500 GLN A 235 -153.95 -119.72 REMARK 500 GLU A 255 -114.17 -90.50 REMARK 500 LEU A 257 123.69 108.67 REMARK 500 TYR A 268 -8.46 -49.27 REMARK 500 LYS A 270 -24.69 80.70 REMARK 500 THR A 286 -72.20 -130.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 262 VAL A 263 135.96 REMARK 500 VAL A 263 SER A 264 126.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2029 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A2030 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH A2031 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A2034 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH A2042 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A2047 DISTANCE = 7.72 ANGSTROMS REMARK 525 HOH A2060 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A2080 DISTANCE = 6.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1000 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 121 OE2 REMARK 620 2 GLU A 121 OE1 53.6 REMARK 620 3 GLU A 191 OE1 79.0 87.3 REMARK 620 4 GLU A 191 OE2 123.2 93.3 51.7 REMARK 620 5 HIS A 271 ND1 92.3 145.2 78.6 102.1 REMARK 620 6 HOH A2025 O 115.7 99.5 165.1 114.2 102.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1002 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 138 OE2 REMARK 620 2 GLU A 138 OE1 70.7 REMARK 620 3 GLU A 141 OE1 91.9 58.8 REMARK 620 4 ASP A 169 OD1 85.2 133.5 164.4 REMARK 620 5 ASP A 169 OD2 126.4 150.2 93.9 75.7 REMARK 620 6 HOH A2061 O 173.9 106.3 90.9 93.5 58.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1001 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 167 OE2 REMARK 620 2 GLU A 167 OE2 77.1 REMARK 620 3 GLU A 167 OE1 106.9 70.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1004 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 290 OD2 REMARK 620 2 ASP A 290 OD1 49.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5P A3001 DBREF 1W77 A 75 302 UNP O64726 O64726 75 302 SEQADV 1W77 MET A 75 UNP O64726 LYS 75 ENGINEERED MUTATION SEQRES 1 A 228 MET GLU LYS SER VAL SER VAL ILE LEU LEU ALA GLY GLY SEQRES 2 A 228 GLN GLY LYS ARG MET LYS MET SER MET PRO LYS GLN TYR SEQRES 3 A 228 ILE PRO LEU LEU GLY GLN PRO ILE ALA LEU TYR SER PHE SEQRES 4 A 228 PHE THR PHE SER ARG MET PRO GLU VAL LYS GLU ILE VAL SEQRES 5 A 228 VAL VAL CYS ASP PRO PHE PHE ARG ASP ILE PHE GLU GLU SEQRES 6 A 228 TYR GLU GLU SER ILE ASP VAL ASP LEU ARG PHE ALA ILE SEQRES 7 A 228 PRO GLY LYS GLU ARG GLN ASP SER VAL TYR SER GLY LEU SEQRES 8 A 228 GLN GLU ILE ASP VAL ASN SER GLU LEU VAL CYS ILE HIS SEQRES 9 A 228 ASP SER ALA ARG PRO LEU VAL ASN THR GLU ASP VAL GLU SEQRES 10 A 228 LYS VAL LEU LYS ASP GLY SER ALA VAL GLY ALA ALA VAL SEQRES 11 A 228 LEU GLY VAL PRO ALA LYS ALA THR ILE LYS GLU VAL ASN SEQRES 12 A 228 SER ASP SER LEU VAL VAL LYS THR LEU ASP ARG LYS THR SEQRES 13 A 228 LEU TRP GLU MET GLN THR PRO GLN VAL ILE LYS PRO GLU SEQRES 14 A 228 LEU LEU LYS LYS GLY PHE GLU LEU VAL LYS SER GLU GLY SEQRES 15 A 228 LEU GLU VAL THR ASP ASP VAL SER ILE VAL GLU TYR LEU SEQRES 16 A 228 LYS HIS PRO VAL TYR VAL SER GLN GLY SER TYR THR ASN SEQRES 17 A 228 ILE LYS VAL THR THR PRO ASP ASP LEU LEU LEU ALA GLU SEQRES 18 A 228 ARG ILE LEU SER GLU ASP SER HET CD A1000 1 HET CU A1001 1 HET CU A1002 1 HET CU A1003 1 HET CU A1004 1 HET C5P A3001 21 HETNAM CD CADMIUM ION HETNAM CU COPPER (II) ION HETNAM C5P CYTIDINE-5'-MONOPHOSPHATE FORMUL 2 CD CD 2+ FORMUL 3 CU 4(CU 2+) FORMUL 7 C5P C9 H14 N3 O8 P FORMUL 8 HOH *166(H2 O) HELIX 1 1 ILE A 108 ARG A 118 1 11 HELIX 2 2 ASP A 130 PHE A 133 5 4 HELIX 3 3 ARG A 134 GLU A 139 1 6 HELIX 4 4 GLU A 156 GLU A 167 1 12 HELIX 5 5 ASN A 186 GLY A 201 1 16 HELIX 6 6 LYS A 241 GLU A 255 1 15 HELIX 7 7 VAL A 266 LYS A 270 5 5 HELIX 8 8 THR A 287 GLU A 300 1 14 SHEET 1 AA 7 ASP A 147 ALA A 151 0 SHEET 2 AA 7 VAL A 122 VAL A 128 1 O LYS A 123 N ASP A 147 SHEET 3 AA 7 VAL A 79 LEU A 84 1 O VAL A 79 N LYS A 123 SHEET 4 AA 7 LEU A 174 ASP A 179 1 O LEU A 174 N SER A 80 SHEET 5 AA 7 TRP A 232 ILE A 240 -1 O GLN A 238 N ILE A 177 SHEET 6 AA 7 ALA A 202 PRO A 208 -1 O ALA A 203 N VAL A 239 SHEET 7 AA 7 TYR A 274 GLN A 277 1 O TYR A 274 N VAL A 204 SHEET 1 AB 2 PRO A 102 LEU A 103 0 SHEET 2 AB 2 GLN A 106 PRO A 107 -1 O GLN A 106 N LEU A 103 LINK OE2 GLU A 121 CD CD A1000 1555 1555 1.79 LINK OE1 GLU A 121 CD CD A1000 1555 1555 2.70 LINK OE2 GLU A 138 CU CU A1002 1555 1555 2.19 LINK OE1 GLU A 138 CU CU A1002 1555 1555 1.44 LINK OE1 GLU A 141 CU CU A1002 1555 1555 1.95 LINK OE2 GLU A 167 CU CU A1001 1555 1555 2.43 LINK OE2 GLU A 167 CU CU A1001 5675 1555 1.70 LINK OE1 GLU A 167 CU CU A1001 5675 1555 2.02 LINK OD1 ASP A 169 CU CU A1002 5675 1555 1.89 LINK OD2 ASP A 169 CU CU A1002 5675 1555 1.66 LINK OE1 GLU A 191 CD CD A1000 1555 1555 2.63 LINK OE2 GLU A 191 CD CD A1000 1555 1555 2.39 LINK ND1 HIS A 271 CD CD A1000 2665 1555 2.31 LINK OD2 ASP A 290 CU CU A1004 1555 1555 2.33 LINK OD1 ASP A 290 CU CU A1004 1555 1555 2.75 LINK CD CD A1000 O HOH A2025 1555 1555 2.46 LINK CU CU A1002 O HOH A2061 1555 5675 2.49 CISPEP 1 THR A 236 PRO A 237 0 13.31 SITE 1 AC1 4 GLU A 121 GLU A 191 HIS A 271 HOH A2025 SITE 1 AC2 1 GLU A 167 SITE 1 AC3 4 GLU A 138 GLU A 141 ASP A 169 HOH A2061 SITE 1 AC4 1 HOH A2162 SITE 1 AC5 2 THR A 286 ASP A 290 SITE 1 AC6 11 LEU A 84 ALA A 85 GLY A 86 GLY A 87 SITE 2 AC6 11 GLY A 154 LYS A 155 GLU A 156 SER A 160 SITE 3 AC6 11 ASP A 179 LYS A 284 HOH A2166 CRYST1 74.496 74.496 223.026 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013424 0.007750 0.000000 0.00000 SCALE2 0.000000 0.015500 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004484 0.00000