HEADER OXIDOREDUCTASE 01-SEP-04 1W7C TITLE PPLO AT 1.23 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSYL OXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PPLO HOMOLENZYME HALF DIMER, RESIDUES 41-787; COMPND 5 EC: 1.4.3.13; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: RESIDUE A478 AN ACTIVE SITE TYR RESIDUE, WAS COMPND 8 AUTOCATALYTICALLY MODIFIED TO TPQ. THE ENZYME IS GLYCOSYLATED AT ASN COMPND 9 A81, ASN A104, ASN A191, ASN A309, AND ASN A 434. RESIDUE LYS 66 IS COMPND 10 PARTIALLY CROSS-LINKED WITH RESIDUE LYS 778 TO FORM COMPND 11 DEHYDROLYSINONORLEUCINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PICHIA PASTORIS; SOURCE 3 ORGANISM_TAXID: 4922; SOURCE 4 ATCC: 28485; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: GS115; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PPIC3; SOURCE 9 OTHER_DETAILS: ISOLATION EXUDATE OF OAK, FRANCE HISTORY, ATCC, CBS, SOURCE 10 A.GUILLIERMOND KEYWDS AMINE OXIDASE, OXIDOREDUCTASE, QUINOPROTEIN, TOPAQUINONE ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR A.P.DUFF,A.E.COHEN,P.J.ELLIS,J.M.GUSS REVDAT 7 13-DEC-23 1W7C 1 REMARK HETSYN REVDAT 6 29-JUL-20 1W7C 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 30-OCT-19 1W7C 1 LINK REVDAT 4 30-JAN-19 1W7C 1 REMARK REVDAT 3 16-JAN-13 1W7C 1 COMPND SOURCE KEYWDS REMARK REVDAT 3 2 1 VERSN DBREF MODRES HET REVDAT 3 3 1 HETNAM HETSYN FORMUL LINK REVDAT 3 4 1 SITE ATOM ANISOU HETATM REVDAT 3 5 1 TER CONECT MASTER REVDAT 2 24-FEB-09 1W7C 1 VERSN REVDAT 1 31-AUG-06 1W7C 0 JRNL AUTH A.P.DUFF,A.E.COHEN,P.J.ELLIS,K.HILMER,D.B.LANGLEY, JRNL AUTH 2 D.M.DOOLEY,H.C.FREEMAN,J.M.GUSS JRNL TITL THE 1.23 A STRUCTURE OF PICHIA PASTORIS LYSYL OXIDASE JRNL TITL 2 REVEALS A LYSINE-LYSINE CROSS-LINK JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 1073 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 16929109 JRNL DOI 10.1107/S0907444906026333 REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 237810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.113 REMARK 3 R VALUE (WORKING SET) : 0.112 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4927 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 17374 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 353 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5944 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 1046 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.37000 REMARK 3 B22 (A**2) : 2.13000 REMARK 3 B33 (A**2) : -1.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.59000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.029 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.032 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.674 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.988 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.982 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6479 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5403 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8849 ; 1.473 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12650 ; 0.822 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 757 ; 7.095 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 959 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7232 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1340 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1081 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6308 ; 0.257 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3706 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 729 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 15 ; 0.081 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 241 ; 0.315 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 80 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3780 ; 6.974 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6164 ; 8.797 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2693 ;12.195 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2670 ;14.650 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. COORDINATES FOR THE UNOBSERVED TPQ 478 SIDE CHAIN REMARK 3 HAVE BEEN MODELLED, WITH ZERO OCCUPANCY, IN THE STANDARD ON- REMARK 3 COPPER CONFORMATION AS ALTERNATE CONFORMER A AND IN THE STANDARD REMARK 3 OFF-COPPER CONFORMATION AS ALTERNATE CONFORMATION B. THE B- REMARK 3 FACTORS ARE SET TO 50.00, BECAUSE THE APPARENTLY REFINED VALUES REMARK 3 WERE INAPPROPRIATE. THE COORDINATES HAVE BEEN CAREFULLY REMARK 3 MODELLED. THEY ARE REFINED IN TERMS OF STEREOCHEMISTRY BUT NOT REMARK 3 USING X-RAY DATA. THEY ARE DESCRIBED AND ILLUSTRATED IN THE REMARK 3 PAPER UNDER REVIEW. THE AUTHORS BELIEVE THAT IN THIS CASE THESE REMARK 3 COORDINATES SHOULD APPEAR AS ABOVE INTERMIXED WITH THE REFINED REMARK 3 COORDINATES. THEIR ABSENCE IS LIKELY TO BE MORE LIABLE TO REMARK 3 CONFUSE THAN THEIR PRESENCE, ESPECIALLY WHEN CONSIDERED REMARK 3 ALONGSIDE THE PUBLICATION. REMARK 4 REMARK 4 1W7C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1290020941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979805 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 272737 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.240 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 2.780 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.51200 REMARK 200 R SYM FOR SHELL (I) : 0.39400 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1N9E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% MPD, IMIDAZOLE PH 8.0, 200 REMARK 280 MILLIMOLAR MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 300K., PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.97400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.51350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.97400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.51350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -216.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 139.94800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CATALYTIC ACTIVITY: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 REMARK 400 THE TPQ SIDE CHAIN IS POORLY RESOLVED, BUT IS DEFINATELY REMARK 400 ON-COPPER WITH SIGNIFICANT OCCUPANCY, ESTIMATED 70%, REMARK 400 AND IS OFF-COPPER OTHERWISE. THE OFF COPPER STATES REMARK 400 ARE NOT RESOLVED. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 41 REMARK 465 SER A 42 REMARK 465 MET A 780 REMARK 465 THR A 781 REMARK 465 ASN A 782 REMARK 465 SER A 783 REMARK 465 ASP A 784 REMARK 465 GLU A 785 REMARK 465 VAL A 786 REMARK 465 TYR A 787 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 779 C O CB CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TPQ A 478 C1 C2 O2 C3 C4 O4 C5 REMARK 480 TPQ A 478 O5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 TPQ A 478 O HOH A 3035 0.11 REMARK 500 C4 TPQ A 478 O HOH A 3035 1.18 REMARK 500 OE2 GLU A 54 O HOH A 2020 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 175 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 240 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 310 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 521 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 LEU A 642 CA - CB - CG ANGL. DEV. = 19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 157 4.16 -152.09 REMARK 500 ARG A 406 -137.34 -111.04 REMARK 500 ASP A 430 -0.37 79.38 REMARK 500 SER A 457 21.47 -145.08 REMARK 500 SER A 526 -173.92 65.37 REMARK 500 THR A 569 -164.92 -127.12 REMARK 500 GLN A 635 44.99 -145.98 REMARK 500 GLU A 651 59.07 -116.46 REMARK 500 ALA A 709 70.44 -115.24 REMARK 500 ARG A 772 41.80 -97.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2081 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A2083 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A2089 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A2117 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A2166 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2178 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2218 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A2232 DISTANCE = 6.75 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 801 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TPQ A 478 O4 REMARK 620 2 HIS A 528 NE2 97.7 REMARK 620 3 HIS A 530 NE2 108.4 99.2 REMARK 620 4 HIS A 694 ND1 108.6 100.0 135.2 REMARK 620 5 HOH A3035 O 2.7 97.0 106.0 111.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 537 OD1 REMARK 620 2 LEU A 538 O 100.9 REMARK 620 3 ASP A 539 OD1 91.8 81.2 REMARK 620 4 ASP A 683 OD1 99.6 158.4 91.4 REMARK 620 5 ILE A 684 O 88.5 91.5 172.6 95.8 REMARK 620 6 HOH A2742 O 177.6 77.5 89.6 82.2 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 803 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 580 OE1 REMARK 620 2 GLU A 580 OE2 53.9 REMARK 620 3 PHE A 673 O 84.6 90.7 REMARK 620 4 ASP A 675 OD2 73.9 127.3 90.9 REMARK 620 5 GLU A 677 OE1 99.1 96.0 173.4 84.9 REMARK 620 6 HOH A2903 O 133.4 79.6 95.1 152.5 86.4 REMARK 620 7 HOH A2904 O 148.1 156.6 85.9 75.9 88.1 77.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 804 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2052 O REMARK 620 2 HOH A2054 O 91.0 REMARK 620 3 HOH A2059 O 91.3 177.7 REMARK 620 4 HOH A2060 O 89.7 92.1 87.5 REMARK 620 5 HOH A2645 O 177.3 88.1 89.6 87.8 REMARK 620 6 HOH A2649 O 90.8 91.5 88.9 176.4 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 805 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2097 O REMARK 620 2 HOH A2190 O 87.9 REMARK 620 3 HOH A2191 O 85.9 86.7 REMARK 620 4 HOH A2400 O 92.5 177.5 95.8 REMARK 620 5 HOH A2795 O 176.1 96.0 94.7 83.6 REMARK 620 6 HOH A2803 O 88.7 91.8 174.5 85.8 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 806 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2024 O REMARK 620 2 HOH A2252 O 115.0 REMARK 620 3 HOH A2551 O 89.2 94.8 REMARK 620 4 HOH A2552 O 71.5 173.3 86.7 REMARK 620 5 HOH A2556 O 92.0 92.6 171.3 85.5 REMARK 620 6 HOH A2561 O 170.2 74.3 87.0 99.2 90.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 807 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2100 O REMARK 620 2 HOH A2243 O 76.1 REMARK 620 3 HOH A2248 O 71.7 129.4 REMARK 620 4 HOH A2793 O 127.6 102.6 70.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 808 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2021 O REMARK 620 2 HOH A2022 O 75.8 REMARK 620 3 HOH A2888 O 75.1 133.9 REMARK 620 4 HOH A2889 O 144.7 83.4 101.1 REMARK 620 5 HOH A2890 O 69.6 69.0 67.7 76.5 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N9E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PICHIA PASTORIS LYSYL OXIDASE PPLO REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 1-40 ARE CLEAVED, AS CONFIRMED BY N-TERMINAL REMARK 999 PROTEIN SEQUENCING. NINE SEQUENCE CONFLICTS ARE MODELLED. REMARK 999 RESIDUE Y478 IS POST TRANSLATIONALLY SELF-PROCESSED REMARK 999 MODIFIED TO BECOME TPQ. SIGNIFICANT UNINTERPRETED DIFFERENCE REMARK 999 DENSITY REMAINS ASSOCIATED WITH THE TPQ SIDE CHAIN. SOME REMARK 999 SURFACE SIDE CHAINS THAT ARE COMPLETELY UNOBSERVED HAVE REMARK 999 BEEN MODELLED WITH AN OCCUPANCY OF 0.01. THE N-TERMINUS REMARK 999 IS RESIDUE 41. REMARK 999 RESIDUES 41-42 ARE UNOBSERVED. THE C-TERMINUS FROM REMARK 999 RESIDUE 770 SPLITS INTO TWO CONFORMATIONS BEFORE EACH REMARK 999 BECOMES UNOBSERVED. ONE CONFORMATION BECOMES UNOBSERVED REMARK 999 AFTER RESIDUE 772, THE OTHER BECOMES UNOBSERVED AT REMARK 999 RESIDUE 779. THE C-TERMINUS IS RESIDUE 787. REMARK 999 MICROHETEROGENEITY IS SUSPECTED AT RESIDUES 337, 362, REMARK 999 413, 469, 498 AND 618, BUT THIS HAS NOT BEEN MODELLED. REMARK 999 A PARTIAL CROSS-LINK IS OBSERVED BETWEEN LYS 66 AND LYS 778. REMARK 999 THIS CROSS-LINK IS NAMED IN THE PUBLICATION AS REMARK 999 DEHYDROLYSINONORLEUCINE KNK 778. THE FORMATION OF THE CROSS- REMARK 999 LINK INVOLVES OXIDATION OF ALYS A 778 TO AN ALLYSINE, WHICH REMARK 999 REACTS WITH ALYS A 66 TO FORM DEHYDROLYSINONORLEUCINE. IN REMARK 999 THIS PROCESS, ALYS A 778 NZ IS LOST AND A DOUBLE BOND IS REMARK 999 FORMED BETWEEN ALYS A 66 NZ AND ALYS A 778 CE. DBREF 1W7C A 41 787 UNP Q96X16 Q96X16_PICPA 41 787 SEQADV 1W7C VAL A 314 UNP Q96X16 ILE 314 CONFLICT SEQADV 1W7C ASP A 338 UNP Q96X16 GLU 338 CONFLICT SEQADV 1W7C SER A 417 UNP Q96X16 ALA 417 CONFLICT SEQADV 1W7C GLN A 549 UNP Q96X16 LYS 549 CONFLICT SEQADV 1W7C PHE A 577 UNP Q96X16 LEU 577 CONFLICT SEQADV 1W7C ASN A 579 UNP Q96X16 LYS 579 CONFLICT SEQADV 1W7C THR A 650 UNP Q96X16 GLU 650 CONFLICT SEQADV 1W7C VAL A 758 UNP Q96X16 LEU 758 CONFLICT SEQADV 1W7C ALA A 761 UNP Q96X16 PRO 761 CONFLICT SEQRES 1 A 747 ALA SER ALA GLU CYS VAL SER ASN GLU ASN VAL GLU ILE SEQRES 2 A 747 GLU ALA PRO LYS THR ASN ILE TRP THR SER LEU ALA LYS SEQRES 3 A 747 GLU GLU VAL GLN GLU VAL LEU ASP LEU LEU HIS SER THR SEQRES 4 A 747 TYR ASN ILE THR GLU VAL THR LYS ALA ASP PHE PHE SER SEQRES 5 A 747 ASN TYR VAL LEU TRP ILE GLU THR LEU LYS PRO ASN LYS SEQRES 6 A 747 THR GLU ALA LEU THR TYR LEU ASP GLU ASP GLY ASP LEU SEQRES 7 A 747 PRO PRO ARG ASN ALA ARG THR VAL VAL TYR PHE GLY GLU SEQRES 8 A 747 GLY GLU GLU GLY TYR PHE GLU GLU LEU LYS VAL GLY PRO SEQRES 9 A 747 LEU PRO VAL SER ASP GLU THR THR ILE GLU PRO LEU SER SEQRES 10 A 747 PHE TYR ASN THR ASN GLY LYS SER LYS LEU PRO PHE GLU SEQRES 11 A 747 VAL GLY HIS LEU ASP ARG ILE LYS SER ALA ALA LYS SER SEQRES 12 A 747 SER PHE LEU ASN LYS ASN LEU ASN THR THR ILE MET ARG SEQRES 13 A 747 ASP VAL LEU GLU GLY LEU ILE GLY VAL PRO TYR GLU ASP SEQRES 14 A 747 MET GLY CYS HIS SER ALA ALA PRO GLN LEU HIS ASP PRO SEQRES 15 A 747 ALA THR GLY ALA THR VAL ASP TYR GLY THR CYS ASN ILE SEQRES 16 A 747 ASN THR GLU ASN ASP ALA GLU ASN LEU VAL PRO THR GLY SEQRES 17 A 747 PHE PHE PHE LYS PHE ASP MET THR GLY ARG ASP VAL SER SEQRES 18 A 747 GLN TRP LYS MET LEU GLU TYR ILE TYR ASN ASN LYS VAL SEQRES 19 A 747 TYR THR SER ALA GLU GLU LEU TYR GLU ALA MET GLN LYS SEQRES 20 A 747 ASP ASP PHE VAL THR LEU PRO LYS ILE ASP VAL ASP ASN SEQRES 21 A 747 LEU ASP TRP THR VAL ILE GLN ARG ASN ASP SER ALA PRO SEQRES 22 A 747 VAL ARG HIS LEU ASP ASP ARG LYS SER PRO ARG LEU VAL SEQRES 23 A 747 GLU PRO GLU GLY ARG ARG TRP ALA TYR ASP GLY ASP GLU SEQRES 24 A 747 GLU TYR PHE SER TRP MET ASP TRP GLY PHE TYR THR SER SEQRES 25 A 747 TRP SER ARG ASP THR GLY ILE SER PHE TYR ASP ILE THR SEQRES 26 A 747 PHE LYS GLY GLU ARG ILE VAL TYR GLU LEU SER LEU GLN SEQRES 27 A 747 GLU LEU ILE ALA GLU TYR GLY SER ASP ASP PRO PHE ASN SEQRES 28 A 747 GLN HIS THR PHE TYR SER ASP ILE SER TYR GLY VAL GLY SEQRES 29 A 747 ASN ARG PHE SER LEU VAL PRO GLY TYR ASP CYS PRO SER SEQRES 30 A 747 THR ALA GLY TYR PHE THR THR ASP THR PHE GLU TYR ASP SEQRES 31 A 747 GLU PHE TYR ASN ARG THR LEU SER TYR CYS VAL PHE GLU SEQRES 32 A 747 ASN GLN GLU ASP TYR SER LEU LEU ARG HIS THR GLY ALA SEQRES 33 A 747 SER TYR SER ALA ILE THR GLN ASN PRO THR LEU ASN VAL SEQRES 34 A 747 ARG PHE ILE SER THR ILE GLY ASN TPQ ASP TYR ASN PHE SEQRES 35 A 747 LEU TYR LYS PHE PHE LEU ASP GLY THR LEU GLU VAL SER SEQRES 36 A 747 VAL ARG ALA ALA GLY TYR ILE GLN ALA GLY TYR TRP ASN SEQRES 37 A 747 PRO GLU THR SER ALA PRO TYR GLY LEU LYS ILE HIS ASP SEQRES 38 A 747 VAL LEU SER GLY SER PHE HIS ASP HIS VAL LEU ASN TYR SEQRES 39 A 747 LYS VAL ASP LEU ASP VAL GLY GLY THR LYS ASN ARG ALA SEQRES 40 A 747 SER GLN TYR VAL MET LYS ASP VAL ASP VAL GLU TYR PRO SEQRES 41 A 747 TRP ALA PRO GLY THR VAL TYR ASN THR LYS GLN ILE ALA SEQRES 42 A 747 ARG GLU VAL PHE GLU ASN GLU ASP PHE ASN GLY ILE ASN SEQRES 43 A 747 TRP PRO GLU ASN GLY GLN GLY ILE LEU LEU ILE GLU SER SEQRES 44 A 747 ALA GLU GLU THR ASN SER PHE GLY ASN PRO ARG ALA TYR SEQRES 45 A 747 ASN ILE MET PRO GLY GLY GLY GLY VAL HIS ARG ILE VAL SEQRES 46 A 747 LYS ASN SER ARG SER GLY PRO GLU THR GLN ASN TRP ALA SEQRES 47 A 747 ARG SER ASN LEU PHE LEU THR LYS HIS LYS ASP THR GLU SEQRES 48 A 747 LEU ARG SER SER THR ALA LEU ASN THR ASN ALA LEU TYR SEQRES 49 A 747 ASP PRO PRO VAL ASN PHE ASN ALA PHE LEU ASP ASP GLU SEQRES 50 A 747 SER LEU ASP GLY GLU ASP ILE VAL ALA TRP VAL ASN LEU SEQRES 51 A 747 GLY LEU HIS HIS LEU PRO ASN SER ASN ASP LEU PRO ASN SEQRES 52 A 747 THR ILE PHE SER THR ALA HIS ALA SER PHE MET LEU THR SEQRES 53 A 747 PRO PHE ASN TYR PHE ASP SER GLU ASN SER ARG ASP THR SEQRES 54 A 747 THR GLN GLN VAL PHE TYR THR TYR ASP ASP GLU THR GLU SEQRES 55 A 747 GLU SER ASN TRP GLU PHE TYR GLY ASN ASP TRP SER SER SEQRES 56 A 747 CYS GLY VAL GLU VAL ALA GLU PRO ASN PHE GLU ASP TYR SEQRES 57 A 747 THR TYR GLY ARG GLY THR ARG ILE ASN LYS LYS MET THR SEQRES 58 A 747 ASN SER ASP GLU VAL TYR MODRES 1W7C ASN A 81 ASN GLYCOSYLATION SITE MODRES 1W7C ASN A 104 ASN GLYCOSYLATION SITE MODRES 1W7C ASN A 191 ASN GLYCOSYLATION SITE MODRES 1W7C ASN A 309 ASN GLYCOSYLATION SITE MODRES 1W7C ASN A 434 ASN GLYCOSYLATION SITE MODRES 1W7C TPQ A 478 TYR HET TPQ A 478 31 HET NAG B 1 25 HET NAG B 2 25 HET BMA B 3 18 HET CU A 801 1 HET CA A 802 1 HET CA A 803 1 HET MG A 804 1 HET MG A 805 1 HET MG A 806 1 HET MG A 807 1 HET MG A 808 1 HET CL A 811 1 HET CL A 812 1 HET CL A 813 1 HET CL A 814 1 HET CL A 815 1 HET IMD A 821 10 HET NAG A1780 50 HET NAG A1784 25 HET NAG A1785 25 HET NAG A1786 25 HETNAM TPQ 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM CU COPPER (II) ION HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM IMD IMIDAZOLE HETSYN TPQ 5-(2-CARBOXY-2-AMINOETHYL)-4-HYDROXY-1,2-BENZOQUINONE; HETSYN 2 TPQ 2,4,5-TRIHYDROXYPHENYLALANINE QUINONE; TOPA QUINONE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 1 TPQ C9 H9 N O5 FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 3 CU CU 2+ FORMUL 4 CA 2(CA 2+) FORMUL 6 MG 5(MG 2+) FORMUL 11 CL 5(CL 1-) FORMUL 16 IMD C3 H5 N2 1+ FORMUL 21 HOH *1046(H2 O) HELIX 1 1 ALA A 65 TYR A 80 1 16 HELIX 2 2 GLU A 84 ALA A 88 5 5 HELIX 3 3 ASN A 104 GLU A 114 1 11 HELIX 4 4 GLU A 170 GLY A 172 5 3 HELIX 5 5 ASP A 175 ASN A 191 1 17 HELIX 6 6 THR A 192 GLY A 204 1 13 HELIX 7 7 PRO A 206 GLU A 208 5 3 HELIX 8 8 ALA A 241 LEU A 244 5 4 HELIX 9 9 ASP A 259 TRP A 263 5 5 HELIX 10 10 SER A 277 LYS A 287 1 11 HELIX 11 11 LEU A 301 VAL A 305 5 5 HELIX 12 12 PHE A 390 HIS A 393 5 4 HELIX 13 13 ASP A 398 GLY A 402 1 5 HELIX 14 14 SER A 512 GLY A 516 5 5 HELIX 15 15 PRO A 588 GLY A 591 5 4 HELIX 16 16 GLN A 635 SER A 640 5 6 HELIX 17 17 ASN A 669 LEU A 674 5 6 HELIX 18 18 ASN A 697 LEU A 701 5 5 HELIX 19 19 ASN A 764 TYR A 768 5 5 SHEET 1 AA 8 VAL A 51 GLU A 52 0 SHEET 2 AA 8 ALA A 334 ASP A 336 1 N TYR A 335 O VAL A 51 SHEET 3 AA 8 TYR A 341 TRP A 344 -1 O TYR A 341 N ASP A 336 SHEET 4 AA 8 TRP A 347 SER A 354 -1 O TRP A 347 N TRP A 344 SHEET 5 AA 8 GLY A 358 PHE A 366 -1 O GLY A 358 N SER A 354 SHEET 6 AA 8 GLU A 369 TYR A 384 -1 O GLU A 369 N PHE A 366 SHEET 7 AA 8 HIS A 528 LEU A 538 -1 O ASP A 529 N GLU A 383 SHEET 8 AA 8 GLU A 682 HIS A 694 -1 O ALA A 686 N VAL A 536 SHEET 1 AB 7 VAL A 51 GLU A 52 0 SHEET 2 AB 7 ALA A 334 ASP A 336 1 N TYR A 335 O VAL A 51 SHEET 3 AB 7 TYR A 341 TRP A 344 -1 O TYR A 341 N ASP A 336 SHEET 4 AB 7 TRP A 347 SER A 354 -1 O TRP A 347 N TRP A 344 SHEET 5 AB 7 GLY A 358 PHE A 366 -1 O GLY A 358 N SER A 354 SHEET 6 AB 7 GLU A 369 TYR A 384 -1 O GLU A 369 N PHE A 366 SHEET 7 AB 7 PHE A 395 SER A 397 -1 O TYR A 396 N ALA A 382 SHEET 1 AC 4 ASN A 93 LEU A 101 0 SHEET 2 AC 4 ASN A 122 PHE A 129 -1 O ASN A 122 N LEU A 101 SHEET 3 AC 4 TYR A 136 GLY A 143 -1 O TYR A 136 N PHE A 129 SHEET 4 AC 4 LYS A 166 PRO A 168 -1 O LEU A 167 N PHE A 137 SHEET 1 AD 4 ASN A 93 LEU A 101 0 SHEET 2 AD 4 ASN A 122 PHE A 129 -1 O ASN A 122 N LEU A 101 SHEET 3 AD 4 TYR A 136 GLY A 143 -1 O TYR A 136 N PHE A 129 SHEET 4 AD 4 THR A 152 PRO A 155 -1 O THR A 152 N GLY A 143 SHEET 1 AE 3 MET A 210 SER A 214 0 SHEET 2 AE 3 THR A 227 ILE A 235 -1 O THR A 232 N HIS A 213 SHEET 3 AE 3 LEU A 219 HIS A 220 -1 O LEU A 219 N VAL A 228 SHEET 1 AF 5 MET A 210 SER A 214 0 SHEET 2 AF 5 THR A 227 ILE A 235 -1 O THR A 232 N HIS A 213 SHEET 3 AF 5 PRO A 246 ASP A 254 -1 N THR A 247 O CYS A 233 SHEET 4 AF 5 LYS A 264 TYR A 270 -1 O LYS A 264 N ASP A 254 SHEET 5 AF 5 LYS A 273 TYR A 275 -1 O LYS A 273 N TYR A 270 SHEET 1 AG 4 LEU A 451 GLY A 455 0 SHEET 2 AG 4 TYR A 458 THR A 462 -1 O TYR A 458 N GLY A 455 SHEET 3 AG 4 GLN A 732 TYR A 737 -1 O VAL A 733 N ILE A 461 SHEET 4 AG 4 SER A 744 GLU A 747 -1 O ASN A 745 N THR A 736 SHEET 1 AH 3 GLY A 505 TYR A 506 0 SHEET 2 AH 3 LEU A 523 SER A 524 -1 O SER A 524 N GLY A 505 SHEET 3 AH 3 LYS A 518 HIS A 520 -1 N ILE A 519 O LEU A 523 SSBOND 1 CYS A 45 CYS A 756 1555 1555 2.01 SSBOND 2 CYS A 212 CYS A 233 1555 1555 2.11 SSBOND 3 CYS A 415 CYS A 440 1555 1555 2.08 LINK ND2AASN A 81 C1 ANAG A1780 1555 1555 1.45 LINK ND2BASN A 81 C1 BNAG A1780 1555 1555 1.43 LINK ND2 ASN A 104 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 191 C1 NAG A1784 1555 1555 1.44 LINK ND2 ASN A 309 C1 NAG A1785 1555 1555 1.45 LINK ND2 ASN A 434 C1 NAG A1786 1555 1555 1.44 LINK C ASN A 477 N TPQ A 478 1555 1555 1.34 LINK C ATPQ A 478 N AASP A 479 1555 1555 1.33 LINK C BTPQ A 478 N BASP A 479 1555 1555 1.32 LINK O5 BTPQ A 478 C2 IMD A 821 1555 1555 1.29 LINK O5 BTPQ A 478 N1 IMD A 821 1555 1555 1.29 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O4 ATPQ A 478 CU CU A 801 1555 1555 2.23 LINK NE2 HIS A 528 CU CU A 801 1555 1555 2.03 LINK NE2 HIS A 530 CU CU A 801 1555 1555 2.02 LINK OD1 ASP A 537 CA CA A 802 1555 1555 2.28 LINK O LEU A 538 CA CA A 802 1555 1555 2.35 LINK OD1 ASP A 539 CA CA A 802 1555 1555 2.27 LINK OE1 GLU A 580 CA CA A 803 1555 1555 2.48 LINK OE2 GLU A 580 CA CA A 803 1555 1555 2.45 LINK O PHE A 673 CA CA A 803 1555 1555 2.35 LINK OD2 ASP A 675 CA CA A 803 1555 1555 2.35 LINK OE1 GLU A 677 CA CA A 803 1555 1555 2.32 LINK OD1 ASP A 683 CA CA A 802 1555 1555 2.32 LINK O ILE A 684 CA CA A 802 1555 1555 2.36 LINK ND1 HIS A 694 CU CU A 801 1555 1555 2.02 LINK CU CU A 801 O HOH A3035 1555 1555 2.21 LINK CA CA A 802 O HOH A2742 1555 1555 2.42 LINK CA CA A 803 O HOH A2903 1555 1555 2.40 LINK CA CA A 803 O HOH A2904 1555 1555 2.42 LINK MG MG A 804 O HOH A2052 1555 1555 2.06 LINK MG MG A 804 O HOH A2054 1555 1555 2.06 LINK MG MG A 804 O HOH A2059 1555 1555 2.02 LINK MG MG A 804 O HOH A2060 1555 1555 2.14 LINK MG MG A 804 O HOH A2645 1555 1555 2.05 LINK MG MG A 804 O HOH A2649 1555 1555 2.03 LINK MG MG A 805 O HOH A2097 1555 1555 1.86 LINK MG MG A 805 O HOH A2190 1555 1555 2.04 LINK MG MG A 805 O HOH A2191 1555 1555 2.08 LINK MG MG A 805 O HOH A2400 1555 4555 2.04 LINK MG MG A 805 O HOH A2795 1555 4555 2.08 LINK MG MG A 805 O HOH A2803 1555 4555 1.97 LINK MG MG A 806 O HOH A2024 1555 1555 2.15 LINK MG MG A 806 O HOH A2252 1555 1555 2.27 LINK MG MG A 806 O HOH A2551 1555 1555 2.14 LINK MG MG A 806 O HOH A2552 1555 1555 2.33 LINK MG MG A 806 O HOH A2556 1555 1555 2.00 LINK MG MG A 806 O HOH A2561 1555 1555 2.05 LINK MG MG A 807 O HOH A2100 1555 1555 2.85 LINK MG MG A 807 O HOH A2243 1555 1555 2.81 LINK MG MG A 807 O HOH A2248 1555 1555 2.27 LINK MG MG A 807 O HOH A2793 1555 4555 2.42 LINK MG MG A 808 O HOH A2021 1555 4545 2.42 LINK MG MG A 808 O HOH A2022 1555 4545 2.30 LINK MG MG A 808 O HOH A2888 1555 1555 2.28 LINK MG MG A 808 O HOH A2889 1555 1555 2.39 LINK MG MG A 808 O HOH A2890 1555 1555 2.87 CISPEP 1 GLY A 143 PRO A 144 0 -1.16 CISPEP 2 LEU A 145 PRO A 146 0 -0.12 CISPEP 3 ALA A 216 PRO A 217 0 4.02 CISPEP 4 LEU A 701 PRO A 702 0 3.86 CRYST1 139.948 67.027 108.688 90.00 118.95 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007146 0.000000 0.003953 0.00000 SCALE2 0.000000 0.014919 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010515 0.00000