HEADER PROTEIN TRANSPORT 07-SEP-04 1W7P TITLE THE CRYSTAL STRUCTURE OF ENDOSOMAL COMPLEX ESCRT-II TITLE 2 (VPS22/VPS25/VPS36) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VPS22, YPL002C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SNF8P; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VPS25, YJR102C; COMPND 8 CHAIN: B, C; COMPND 9 SYNONYM: VPT25; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: VPS36P, YLR417W; COMPND 13 CHAIN: D; COMPND 14 SYNONYM: GRD12, VAC3, VPL11; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: POPC; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: POPC; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 19 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 20 ORGANISM_TAXID: 4932; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 22 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 23 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 24 EXPRESSION_SYSTEM_VECTOR: POPC KEYWDS ESCRT-II COMPLEX, ENDOSOMAL PROTEIN SORTING, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR H.TEO,O.PERISIC,B.GONZALEZ,R.L.WILLIAMS REVDAT 6 05-JUL-17 1W7P 1 REMARK REVDAT 5 25-MAR-15 1W7P 1 SOURCE REMARK REVDAT 4 13-JUL-11 1W7P 1 VERSN REVDAT 3 24-FEB-09 1W7P 1 VERSN REVDAT 2 21-OCT-04 1W7P 1 JRNL REVDAT 1 29-SEP-04 1W7P 0 JRNL AUTH H.TEO,O.PERISIC,B.GONZALEZ,R.L.WILLIAMS JRNL TITL ESCRT-II, AN ENDOSOME-ASSOCIATED COMPLEX REQUIRED FOR JRNL TITL 2 PROTEIN SORTING: CRYSTAL STRUCTURE AND INTERACTIONS WITH JRNL TITL 3 ESCRT-III AND MEMBRANES JRNL REF DEV.CELL V. 7 559 2004 JRNL REFN ISSN 1534-5807 JRNL PMID 15469844 JRNL DOI 10.1016/J.DEVCEL.2004.09.003 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.HIERRO,J.SUN,A.S.RUSNAK,J.KIM,G.PRAG,S.D.EMR,J.H.HURLEY REMARK 1 TITL STRUCTURE OF THE ESCRT-II ENDOSOMAL TRAFFICKING COMPLEX REMARK 1 REF NATURE V. 431 221 2004 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 15329733 REMARK 1 DOI 10.1038/NATURE02914 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 92.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 23786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.294 REMARK 3 R VALUE (WORKING SET) : 0.292 REMARK 3 FREE R VALUE : 0.330 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1216 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1629 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4890 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.4670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6134 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.14000 REMARK 3 B22 (A**2) : -2.14000 REMARK 3 B33 (A**2) : 4.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.615 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.616 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 44.696 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.910 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6258 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5651 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8454 ; 1.603 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13205 ; 1.004 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 742 ; 8.271 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 941 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6784 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1249 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1803 ; 0.264 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 7400 ; 0.245 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 4005 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 166 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.229 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 54 ; 0.273 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.341 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3729 ; 0.181 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6067 ; 0.357 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2529 ; 0.555 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2387 ; 0.924 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 6 B 47 6 REMARK 3 1 C 6 C 47 6 REMARK 3 2 B 79 B 125 6 REMARK 3 2 C 79 C 125 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 B (A): 1435 ; 0.61 ; 5.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 1435 ; 0.64 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 126 B 138 6 REMARK 3 1 C 126 C 138 6 REMARK 3 2 B 145 B 192 6 REMARK 3 2 C 145 C 192 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 2 B (A): 978 ; 1.05 ; 5.00 REMARK 3 LOOSE THERMAL 2 B (A**2): 978 ; 0.23 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 69.5049 66.8730 158.7599 REMARK 3 T TENSOR REMARK 3 T11: 1.4434 T22: 2.3604 REMARK 3 T33: 1.5720 T12: 0.7477 REMARK 3 T13: -0.2530 T23: -0.1583 REMARK 3 L TENSOR REMARK 3 L11: 2.2109 L22: 12.2810 REMARK 3 L33: 5.2702 L12: -1.4090 REMARK 3 L13: -4.4139 L23: 8.3518 REMARK 3 S TENSOR REMARK 3 S11: 0.1069 S12: -0.0748 S13: 0.5091 REMARK 3 S21: 0.7075 S22: -0.3441 S23: 1.0691 REMARK 3 S31: -0.4991 S32: -1.6998 S33: 0.2372 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 125 REMARK 3 ORIGIN FOR THE GROUP (A): 88.6585 37.3105 115.7012 REMARK 3 T TENSOR REMARK 3 T11: 2.0551 T22: 0.9265 REMARK 3 T33: 1.2505 T12: -0.3958 REMARK 3 T13: 0.1234 T23: -0.3916 REMARK 3 L TENSOR REMARK 3 L11: 9.5895 L22: 4.0688 REMARK 3 L33: 9.4594 L12: 0.8347 REMARK 3 L13: 3.4640 L23: 4.0442 REMARK 3 S TENSOR REMARK 3 S11: 0.0661 S12: 1.3938 S13: -0.7395 REMARK 3 S21: -1.5359 S22: -0.7986 S23: 0.4926 REMARK 3 S31: 0.8998 S32: -0.6805 S33: 0.7325 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 126 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): 67.5292 21.9275 113.8356 REMARK 3 T TENSOR REMARK 3 T11: 2.4315 T22: 1.4061 REMARK 3 T33: 2.5871 T12: -0.7030 REMARK 3 T13: -0.2255 T23: -0.7633 REMARK 3 L TENSOR REMARK 3 L11: 6.9679 L22: -0.7790 REMARK 3 L33: 8.2738 L12: -5.1942 REMARK 3 L13: -3.8637 L23: -3.8097 REMARK 3 S TENSOR REMARK 3 S11: -0.8201 S12: -0.1423 S13: -1.3271 REMARK 3 S21: -0.2242 S22: 0.6645 S23: 0.4587 REMARK 3 S31: -0.0698 S32: -1.8218 S33: 0.1556 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 396 D 493 REMARK 3 ORIGIN FOR THE GROUP (A): 86.7018 39.7446 159.6250 REMARK 3 T TENSOR REMARK 3 T11: 0.6800 T22: 0.7274 REMARK 3 T33: 0.7474 T12: -0.1747 REMARK 3 T13: 0.2866 T23: 0.1094 REMARK 3 L TENSOR REMARK 3 L11: 17.6583 L22: 6.1677 REMARK 3 L33: 12.2308 L12: -2.1202 REMARK 3 L13: -1.3068 L23: 1.1071 REMARK 3 S TENSOR REMARK 3 S11: -0.6435 S12: -0.5549 S13: -1.0020 REMARK 3 S21: 0.0729 S22: 0.0233 S23: 0.2985 REMARK 3 S31: 0.8265 S32: -0.7466 S33: 0.6202 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 165 A 232 REMARK 3 ORIGIN FOR THE GROUP (A): 104.1567 57.4548 126.9101 REMARK 3 T TENSOR REMARK 3 T11: 1.4228 T22: 0.3510 REMARK 3 T33: 0.6438 T12: -0.1593 REMARK 3 T13: 0.3724 T23: 0.0831 REMARK 3 L TENSOR REMARK 3 L11: 7.9122 L22: 11.5851 REMARK 3 L33: 12.6722 L12: 4.1496 REMARK 3 L13: -2.9596 L23: -2.8057 REMARK 3 S TENSOR REMARK 3 S11: 0.1136 S12: -0.0080 S13: 0.2703 REMARK 3 S21: -1.7373 S22: -0.2829 S23: -0.6980 REMARK 3 S31: -0.8287 S32: 0.8385 S33: 0.1693 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 494 D 566 REMARK 3 ORIGIN FOR THE GROUP (A): 107.3723 35.7516 144.8605 REMARK 3 T TENSOR REMARK 3 T11: 0.9073 T22: 0.5311 REMARK 3 T33: 1.3215 T12: 0.1037 REMARK 3 T13: 0.5247 T23: 0.1636 REMARK 3 L TENSOR REMARK 3 L11: 10.5441 L22: 10.2595 REMARK 3 L33: 14.4466 L12: -0.9621 REMARK 3 L13: -6.2727 L23: -1.9376 REMARK 3 S TENSOR REMARK 3 S11: -0.6778 S12: -0.2917 S13: -1.5599 REMARK 3 S21: -0.2790 S22: -0.0512 S23: -0.7872 REMARK 3 S31: 0.8235 S32: 0.2510 S33: 0.7290 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 125 REMARK 3 ORIGIN FOR THE GROUP (A): 131.3815 47.6863 134.1777 REMARK 3 T TENSOR REMARK 3 T11: 1.0479 T22: 1.7911 REMARK 3 T33: 1.7607 T12: -0.3743 REMARK 3 T13: 1.1546 T23: 0.4875 REMARK 3 L TENSOR REMARK 3 L11: 13.0109 L22: 4.9237 REMARK 3 L33: 6.3074 L12: 0.9882 REMARK 3 L13: -0.9788 L23: 1.5852 REMARK 3 S TENSOR REMARK 3 S11: 0.1453 S12: 0.8204 S13: -0.0148 REMARK 3 S21: -0.5297 S22: -0.0902 S23: -1.4700 REMARK 3 S31: -0.9529 S32: 1.8236 S33: -0.0550 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 126 C 201 REMARK 3 ORIGIN FOR THE GROUP (A): 156.8581 54.0194 133.4906 REMARK 3 T TENSOR REMARK 3 T11: 1.5035 T22: 2.7676 REMARK 3 T33: 2.6653 T12: -0.7283 REMARK 3 T13: 0.7542 T23: 0.3521 REMARK 3 L TENSOR REMARK 3 L11: 1.3736 L22: 2.6316 REMARK 3 L33: 7.4659 L12: -5.9381 REMARK 3 L13: 4.3911 L23: 0.0583 REMARK 3 S TENSOR REMARK 3 S11: 0.3136 S12: 0.0019 S13: 0.1409 REMARK 3 S21: 1.1393 S22: 0.2747 S23: -0.5320 REMARK 3 S31: 0.4088 S32: 0.5705 S33: -0.5882 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): 86.9465 53.6120 141.2572 REMARK 3 T TENSOR REMARK 3 T11: 0.9977 T22: 0.4357 REMARK 3 T33: 0.4949 T12: -0.0301 REMARK 3 T13: -0.0299 T23: -0.0986 REMARK 3 L TENSOR REMARK 3 L11: 16.2947 L22: 8.4020 REMARK 3 L33: 13.5011 L12: 0.5520 REMARK 3 L13: -9.3739 L23: -3.3176 REMARK 3 S TENSOR REMARK 3 S11: -0.3887 S12: 0.1141 S13: -0.2649 REMARK 3 S21: -0.9872 S22: 0.1477 S23: 0.5968 REMARK 3 S31: -0.4591 S32: -1.0808 S33: 0.2410 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1W7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1290020998. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.055 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24861 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 92.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SNB, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.1% PEG35000, 0.1 M TRIS ACETATE PH REMARK 280 8.5, 1.36 M SODIUM FORMIATE, 19% GLYCEROL, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.07600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 139.61400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.53800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.07600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.53800 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 139.61400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLN A 3 REMARK 465 PHE A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 PHE A 9 REMARK 465 ASP A 10 REMARK 465 GLU A 11 REMARK 465 LEU A 12 REMARK 465 LYS A 13 REMARK 465 ASP A 14 REMARK 465 GLY A 15 REMARK 465 LYS A 16 REMARK 465 TYR A 17 REMARK 465 ASN A 18 REMARK 465 ASP A 19 REMARK 465 LEU A 233 REMARK 465 ASP B 55 REMARK 465 ASN B 56 REMARK 465 GLU B 57 REMARK 465 LEU B 58 REMARK 465 ASP B 59 REMARK 465 SER B 60 REMARK 465 GLY B 61 REMARK 465 SER B 62 REMARK 465 THR B 63 REMARK 465 ASP B 64 REMARK 465 ASN B 65 REMARK 465 ASP B 66 REMARK 465 ASP B 67 REMARK 465 SER B 68 REMARK 465 LYS B 69 REMARK 465 LYS B 70 REMARK 465 ILE B 71 REMARK 465 LYS B 200 REMARK 465 VAL B 201 REMARK 465 VAL B 202 REMARK 465 ASP C 55 REMARK 465 ASN C 56 REMARK 465 GLU C 57 REMARK 465 LEU C 58 REMARK 465 ASP C 59 REMARK 465 SER C 60 REMARK 465 GLY C 61 REMARK 465 SER C 62 REMARK 465 THR C 63 REMARK 465 ASP C 64 REMARK 465 ASN C 65 REMARK 465 ASP C 66 REMARK 465 ASP C 67 REMARK 465 SER C 68 REMARK 465 LYS C 69 REMARK 465 LYS C 70 REMARK 465 ILE C 71 REMARK 465 LYS C 200 REMARK 465 VAL C 201 REMARK 465 VAL C 202 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 TYR D 3 REMARK 465 TRP D 4 REMARK 465 HIS D 5 REMARK 465 TYR D 6 REMARK 465 VAL D 7 REMARK 465 GLU D 8 REMARK 465 THR D 9 REMARK 465 THR D 10 REMARK 465 SER D 11 REMARK 465 SER D 12 REMARK 465 GLY D 13 REMARK 465 GLN D 14 REMARK 465 PRO D 15 REMARK 465 LEU D 16 REMARK 465 LEU D 17 REMARK 465 ARG D 18 REMARK 465 GLU D 19 REMARK 465 GLY D 20 REMARK 465 GLU D 21 REMARK 465 LYS D 22 REMARK 465 ASP D 23 REMARK 465 ILE D 24 REMARK 465 PHE D 25 REMARK 465 ILE D 26 REMARK 465 ASP D 27 REMARK 465 GLN D 28 REMARK 465 SER D 29 REMARK 465 VAL D 30 REMARK 465 GLY D 31 REMARK 465 LEU D 32 REMARK 465 TYR D 33 REMARK 465 HIS D 34 REMARK 465 GLY D 35 REMARK 465 LYS D 36 REMARK 465 SER D 37 REMARK 465 LYS D 38 REMARK 465 ILE D 39 REMARK 465 LEU D 40 REMARK 465 GLN D 41 REMARK 465 ARG D 42 REMARK 465 GLN D 43 REMARK 465 ARG D 44 REMARK 465 GLY D 45 REMARK 465 ARG D 46 REMARK 465 ILE D 47 REMARK 465 PHE D 48 REMARK 465 LEU D 49 REMARK 465 THR D 50 REMARK 465 SER D 51 REMARK 465 GLN D 52 REMARK 465 ARG D 53 REMARK 465 ILE D 54 REMARK 465 ILE D 55 REMARK 465 TYR D 56 REMARK 465 ILE D 57 REMARK 465 ASP D 58 REMARK 465 ASP D 59 REMARK 465 ALA D 60 REMARK 465 LYS D 61 REMARK 465 PRO D 62 REMARK 465 THR D 63 REMARK 465 GLN D 64 REMARK 465 ASN D 65 REMARK 465 SER D 66 REMARK 465 LEU D 67 REMARK 465 GLY D 68 REMARK 465 LEU D 69 REMARK 465 GLU D 70 REMARK 465 LEU D 71 REMARK 465 ASP D 72 REMARK 465 ASP D 73 REMARK 465 LEU D 74 REMARK 465 ALA D 75 REMARK 465 TYR D 76 REMARK 465 VAL D 77 REMARK 465 ASN D 78 REMARK 465 TYR D 79 REMARK 465 SER D 80 REMARK 465 SER D 81 REMARK 465 GLY D 82 REMARK 465 PHE D 83 REMARK 465 LEU D 84 REMARK 465 THR D 85 REMARK 465 ARG D 86 REMARK 465 SER D 87 REMARK 465 PRO D 88 REMARK 465 ARG D 89 REMARK 465 LEU D 90 REMARK 465 ILE D 91 REMARK 465 LEU D 92 REMARK 465 PHE D 93 REMARK 465 PHE D 94 REMARK 465 LYS D 95 REMARK 465 ASP D 96 REMARK 465 PRO D 97 REMARK 465 SER D 98 REMARK 465 SER D 99 REMARK 465 LYS D 100 REMARK 465 ASP D 101 REMARK 465 GLU D 102 REMARK 465 LEU D 103 REMARK 465 GLY D 104 REMARK 465 LYS D 105 REMARK 465 SER D 106 REMARK 465 ALA D 107 REMARK 465 GLU D 108 REMARK 465 THR D 109 REMARK 465 ALA D 110 REMARK 465 SER D 111 REMARK 465 ALA D 112 REMARK 465 ASP D 113 REMARK 465 VAL D 114 REMARK 465 VAL D 115 REMARK 465 SER D 116 REMARK 465 THR D 117 REMARK 465 TRP D 118 REMARK 465 VAL D 119 REMARK 465 CYS D 120 REMARK 465 PRO D 121 REMARK 465 ILE D 122 REMARK 465 CYS D 123 REMARK 465 MET D 124 REMARK 465 VAL D 125 REMARK 465 SER D 126 REMARK 465 ASN D 127 REMARK 465 GLU D 128 REMARK 465 THR D 129 REMARK 465 GLN D 130 REMARK 465 GLY D 131 REMARK 465 GLU D 132 REMARK 465 PHE D 133 REMARK 465 THR D 134 REMARK 465 LYS D 135 REMARK 465 ASP D 136 REMARK 465 THR D 137 REMARK 465 LEU D 138 REMARK 465 PRO D 139 REMARK 465 THR D 140 REMARK 465 PRO D 141 REMARK 465 ILE D 142 REMARK 465 CYS D 143 REMARK 465 ILE D 144 REMARK 465 ASN D 145 REMARK 465 CYS D 146 REMARK 465 GLY D 147 REMARK 465 VAL D 148 REMARK 465 PRO D 149 REMARK 465 ALA D 150 REMARK 465 ASP D 151 REMARK 465 TYR D 152 REMARK 465 GLU D 153 REMARK 465 LEU D 154 REMARK 465 THR D 155 REMARK 465 LYS D 156 REMARK 465 SER D 157 REMARK 465 SER D 158 REMARK 465 ILE D 159 REMARK 465 ASN D 160 REMARK 465 CYS D 161 REMARK 465 SER D 162 REMARK 465 ASN D 163 REMARK 465 ALA D 164 REMARK 465 ILE D 165 REMARK 465 ASP D 166 REMARK 465 PRO D 167 REMARK 465 ASN D 168 REMARK 465 ALA D 169 REMARK 465 ASN D 170 REMARK 465 PRO D 171 REMARK 465 GLN D 172 REMARK 465 ASN D 173 REMARK 465 GLN D 174 REMARK 465 PHE D 175 REMARK 465 GLY D 176 REMARK 465 VAL D 177 REMARK 465 ASN D 178 REMARK 465 SER D 179 REMARK 465 GLU D 180 REMARK 465 ASN D 181 REMARK 465 ILE D 182 REMARK 465 CYS D 183 REMARK 465 PRO D 184 REMARK 465 ALA D 185 REMARK 465 CYS D 186 REMARK 465 THR D 187 REMARK 465 PHE D 188 REMARK 465 ALA D 189 REMARK 465 ASN D 190 REMARK 465 HIS D 191 REMARK 465 PRO D 192 REMARK 465 GLN D 193 REMARK 465 ILE D 194 REMARK 465 GLY D 195 REMARK 465 ASN D 196 REMARK 465 CYS D 197 REMARK 465 GLU D 198 REMARK 465 ILE D 199 REMARK 465 CYS D 200 REMARK 465 GLY D 201 REMARK 465 HIS D 202 REMARK 465 ARG D 203 REMARK 465 LEU D 204 REMARK 465 PRO D 205 REMARK 465 ASN D 206 REMARK 465 ALA D 207 REMARK 465 SER D 208 REMARK 465 LYS D 209 REMARK 465 VAL D 210 REMARK 465 ARG D 211 REMARK 465 SER D 212 REMARK 465 LYS D 213 REMARK 465 LEU D 214 REMARK 465 ASN D 215 REMARK 465 ARG D 216 REMARK 465 LEU D 217 REMARK 465 ASN D 218 REMARK 465 PHE D 219 REMARK 465 HIS D 220 REMARK 465 ASP D 221 REMARK 465 SER D 222 REMARK 465 ARG D 223 REMARK 465 VAL D 224 REMARK 465 HIS D 225 REMARK 465 ILE D 226 REMARK 465 GLU D 227 REMARK 465 LEU D 228 REMARK 465 GLU D 229 REMARK 465 LYS D 230 REMARK 465 ASN D 231 REMARK 465 SER D 232 REMARK 465 LEU D 233 REMARK 465 ALA D 234 REMARK 465 ARG D 235 REMARK 465 ASN D 236 REMARK 465 LYS D 237 REMARK 465 SER D 238 REMARK 465 SER D 239 REMARK 465 HIS D 240 REMARK 465 SER D 241 REMARK 465 ALA D 242 REMARK 465 LEU D 243 REMARK 465 SER D 244 REMARK 465 SER D 245 REMARK 465 SER D 246 REMARK 465 SER D 247 REMARK 465 SER D 248 REMARK 465 THR D 249 REMARK 465 GLY D 250 REMARK 465 SER D 251 REMARK 465 SER D 252 REMARK 465 THR D 253 REMARK 465 GLU D 254 REMARK 465 PHE D 255 REMARK 465 VAL D 256 REMARK 465 GLN D 257 REMARK 465 LEU D 258 REMARK 465 SER D 259 REMARK 465 PHE D 260 REMARK 465 ARG D 261 REMARK 465 LYS D 262 REMARK 465 SER D 263 REMARK 465 ASP D 264 REMARK 465 GLY D 265 REMARK 465 VAL D 266 REMARK 465 LEU D 267 REMARK 465 PHE D 268 REMARK 465 SER D 269 REMARK 465 GLN D 270 REMARK 465 ALA D 271 REMARK 465 THR D 272 REMARK 465 GLU D 273 REMARK 465 ARG D 274 REMARK 465 ALA D 275 REMARK 465 LEU D 276 REMARK 465 GLU D 277 REMARK 465 ASN D 278 REMARK 465 ILE D 279 REMARK 465 LEU D 280 REMARK 465 THR D 281 REMARK 465 GLU D 282 REMARK 465 LYS D 283 REMARK 465 ASN D 284 REMARK 465 LYS D 285 REMARK 465 HIS D 286 REMARK 465 ILE D 287 REMARK 465 PHE D 288 REMARK 465 ASN D 289 REMARK 465 GLN D 290 REMARK 465 ASN D 291 REMARK 465 VAL D 292 REMARK 465 VAL D 293 REMARK 465 SER D 294 REMARK 465 VAL D 295 REMARK 465 ASN D 296 REMARK 465 GLY D 297 REMARK 465 VAL D 298 REMARK 465 ASP D 299 REMARK 465 MET D 300 REMARK 465 ARG D 301 REMARK 465 LYS D 302 REMARK 465 GLY D 303 REMARK 465 ALA D 304 REMARK 465 SER D 305 REMARK 465 SER D 306 REMARK 465 HIS D 307 REMARK 465 GLU D 308 REMARK 465 TYR D 309 REMARK 465 ASN D 310 REMARK 465 ASN D 311 REMARK 465 GLU D 312 REMARK 465 VAL D 313 REMARK 465 PRO D 314 REMARK 465 PHE D 315 REMARK 465 ILE D 316 REMARK 465 GLU D 317 REMARK 465 THR D 318 REMARK 465 LYS D 319 REMARK 465 LEU D 320 REMARK 465 SER D 321 REMARK 465 ARG D 322 REMARK 465 ILE D 323 REMARK 465 GLY D 324 REMARK 465 ILE D 325 REMARK 465 SER D 326 REMARK 465 SER D 327 REMARK 465 LEU D 328 REMARK 465 GLU D 329 REMARK 465 LYS D 330 REMARK 465 SER D 331 REMARK 465 ARG D 332 REMARK 465 GLU D 333 REMARK 465 ASN D 334 REMARK 465 GLN D 335 REMARK 465 LEU D 336 REMARK 465 LEU D 337 REMARK 465 ASN D 338 REMARK 465 ASN D 339 REMARK 465 ASP D 340 REMARK 465 ILE D 341 REMARK 465 LEU D 342 REMARK 465 PHE D 343 REMARK 465 ASN D 344 REMARK 465 ASN D 345 REMARK 465 ALA D 346 REMARK 465 LEU D 347 REMARK 465 THR D 348 REMARK 465 ASP D 349 REMARK 465 LEU D 350 REMARK 465 ASN D 351 REMARK 465 LYS D 352 REMARK 465 LEU D 353 REMARK 465 MET D 354 REMARK 465 SER D 355 REMARK 465 LEU D 356 REMARK 465 ALA D 357 REMARK 465 THR D 358 REMARK 465 SER D 359 REMARK 465 ILE D 360 REMARK 465 GLU D 361 REMARK 465 ARG D 362 REMARK 465 LEU D 363 REMARK 465 TYR D 364 REMARK 465 LYS D 365 REMARK 465 ASN D 366 REMARK 465 SER D 367 REMARK 465 ASN D 368 REMARK 465 ILE D 369 REMARK 465 THR D 370 REMARK 465 MET D 371 REMARK 465 LYS D 372 REMARK 465 THR D 373 REMARK 465 LYS D 374 REMARK 465 THR D 375 REMARK 465 LEU D 376 REMARK 465 ASN D 377 REMARK 465 LEU D 378 REMARK 465 GLN D 379 REMARK 465 ASP D 380 REMARK 465 GLU D 381 REMARK 465 SER D 382 REMARK 465 THR D 383 REMARK 465 VAL D 384 REMARK 465 ASN D 385 REMARK 465 GLU D 386 REMARK 465 PRO D 387 REMARK 465 LYS D 388 REMARK 465 THR D 389 REMARK 465 ARG D 390 REMARK 465 ARG D 391 REMARK 465 PRO D 392 REMARK 465 LEU D 393 REMARK 465 LEU D 394 REMARK 465 ILE D 395 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 168 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP C 49 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP C 107 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP D 425 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP D 501 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP D 510 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 49 -75.42 -72.39 REMARK 500 ASN A 51 37.70 -81.45 REMARK 500 CYS A 146 -70.13 -115.77 REMARK 500 ARG A 153 27.99 42.21 REMARK 500 LEU B 4 44.00 -101.68 REMARK 500 TRP B 44 -54.44 -124.00 REMARK 500 VAL B 52 118.71 -163.50 REMARK 500 ASN B 77 31.38 -160.13 REMARK 500 ILE B 81 25.51 -72.00 REMARK 500 GLN B 82 -67.95 -161.45 REMARK 500 LYS B 99 -56.08 -24.78 REMARK 500 ASP B 107 -67.41 -121.09 REMARK 500 GLN B 108 -67.07 -124.61 REMARK 500 ASN B 115 -96.97 -89.48 REMARK 500 ASN B 162 7.26 -60.96 REMARK 500 ARG B 167 13.66 89.01 REMARK 500 PRO B 169 -170.88 -67.39 REMARK 500 LEU B 180 -13.83 -49.45 REMARK 500 ASP B 182 -65.28 -104.63 REMARK 500 ARG B 183 -30.70 -132.52 REMARK 500 ARG B 185 -164.05 -164.75 REMARK 500 LYS B 195 97.49 -176.05 REMARK 500 TYR C 14 30.38 -90.06 REMARK 500 ARG C 16 97.55 -31.66 REMARK 500 TRP C 44 -54.50 -125.11 REMARK 500 ASN C 78 -7.38 -41.17 REMARK 500 GLU C 79 76.97 -66.48 REMARK 500 GLN C 82 -106.62 -124.33 REMARK 500 SER C 84 -166.35 -121.63 REMARK 500 LYS C 99 -73.85 -54.89 REMARK 500 LYS C 102 25.31 -143.93 REMARK 500 GLN C 108 -72.05 -132.97 REMARK 500 ASN C 115 -98.70 -100.23 REMARK 500 THR C 118 42.80 -140.82 REMARK 500 LYS C 144 47.98 -106.24 REMARK 500 VAL C 161 -145.70 -132.21 REMARK 500 ASN C 162 21.30 -74.23 REMARK 500 ARG C 167 24.02 81.76 REMARK 500 ARG C 183 -99.53 -97.47 REMARK 500 ASN C 193 4.07 85.74 REMARK 500 VAL C 196 144.98 177.88 REMARK 500 ASP D 397 86.96 -160.43 REMARK 500 ARG D 398 -82.24 -111.22 REMARK 500 GLU D 422 2.50 -62.96 REMARK 500 PHE D 423 -64.54 -141.55 REMARK 500 ASN D 481 -162.65 -127.89 REMARK 500 LYS D 496 -71.49 -57.45 REMARK 500 GLU D 497 -36.54 -37.12 REMARK 500 ASN D 506 63.11 -118.64 REMARK 500 THR D 515 -71.46 -64.24 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U5T RELATED DB: PDB REMARK 900 STRUCTURE OF THE ESCRT-II ENDOSOMAL TRAFFICKING COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SAMPLE USED FOR CRYSTALLIZATION INCLUDED THE FULL LENGTH REMARK 999 PROTEIN BUT IT APPEARS THAT CHAIN D WAS PROTEOLYTICALLY REMARK 999 CLEAVED DURING CRYSTALLIZATION SOLUTION AND IS ONLY VISIBLE REMARK 999 IN ELECTRON DENSITY MAPS FROM RESIDUE D396 ONWARDS DBREF 1W7P A 1 233 UNP Q12483 SNF8_YEAST 1 233 DBREF 1W7P B 1 202 UNP P47142 YJ72_YEAST 1 202 DBREF 1W7P C 1 202 UNP P47142 YJ72_YEAST 1 202 DBREF 1W7P D 1 566 UNP Q06696 VPS36_YEAST 1 566 SEQRES 1 A 233 MET LYS GLN PHE GLY LEU ALA ALA PHE ASP GLU LEU LYS SEQRES 2 A 233 ASP GLY LYS TYR ASN ASP VAL ASN LYS THR ILE LEU GLU SEQRES 3 A 233 LYS GLN SER VAL GLU LEU ARG ASP GLN LEU MET VAL PHE SEQRES 4 A 233 GLN GLU ARG LEU VAL GLU PHE ALA LYS LYS HIS ASN SER SEQRES 5 A 233 GLU LEU GLN ALA SER PRO GLU PHE ARG SER LYS PHE MET SEQRES 6 A 233 HIS MET CYS SER SER ILE GLY ILE ASP PRO LEU SER LEU SEQRES 7 A 233 PHE ASP ARG ASP LYS HIS LEU PHE THR VAL ASN ASP PHE SEQRES 8 A 233 TYR TYR GLU VAL CYS LEU LYS VAL ILE GLU ILE CYS ARG SEQRES 9 A 233 GLN THR LYS ASP MET ASN GLY GLY VAL ILE SER PHE GLN SEQRES 10 A 233 GLU LEU GLU LYS VAL HIS PHE ARG LYS LEU ASN VAL GLY SEQRES 11 A 233 LEU ASP ASP LEU GLU LYS SER ILE ASP MET LEU LYS SER SEQRES 12 A 233 LEU GLU CYS PHE GLU ILE PHE GLN ILE ARG GLY LYS LYS SEQRES 13 A 233 PHE LEU ARG SER VAL PRO ASN GLU LEU THR SER ASP GLN SEQRES 14 A 233 THR LYS ILE LEU GLU ILE CYS SER ILE LEU GLY TYR SER SEQRES 15 A 233 SER ILE SER LEU LEU LYS ALA ASN LEU GLY TRP GLU ALA SEQRES 16 A 233 VAL ARG SER LYS SER ALA LEU ASP GLU MET VAL ALA ASN SEQRES 17 A 233 GLY LEU LEU TRP ILE ASP TYR GLN GLY GLY ALA GLU ALA SEQRES 18 A 233 LEU TYR TRP ASP PRO SER TRP ILE THR ARG GLN LEU SEQRES 1 B 202 MET SER ALA LEU PRO PRO VAL TYR SER PHE PRO PRO LEU SEQRES 2 B 202 TYR THR ARG GLN PRO ASN SER LEU THR ARG ARG GLN GLN SEQRES 3 B 202 ILE SER THR TRP ILE ASP ILE ILE SER GLN TYR CYS LYS SEQRES 4 B 202 THR LYS LYS ILE TRP TYR MET SER VAL ASP GLY THR VAL SEQRES 5 B 202 ILE ASN ASP ASN GLU LEU ASP SER GLY SER THR ASP ASN SEQRES 6 B 202 ASP ASP SER LYS LYS ILE SER LYS ASN LEU PHE ASN ASN SEQRES 7 B 202 GLU ASP ILE GLN ARG SER VAL SER GLN VAL PHE ILE ASP SEQRES 8 B 202 GLU ILE TRP SER GLN MET THR LYS GLU GLY LYS CYS LEU SEQRES 9 B 202 PRO ILE ASP GLN SER GLY ARG ARG SER SER ASN THR THR SEQRES 10 B 202 THR THR ARG TYR PHE ILE LEU TRP LYS SER LEU ASP SER SEQRES 11 B 202 TRP ALA SER LEU ILE LEU GLN TRP PHE GLU ASP SER GLY SEQRES 12 B 202 LYS LEU ASN GLN VAL ILE THR LEU TYR GLU LEU SER GLU SEQRES 13 B 202 GLY ASP GLU THR VAL ASN TRP GLU PHE HIS ARG MET PRO SEQRES 14 B 202 GLU SER LEU LEU TYR TYR CYS LEU LYS PRO LEU CYS ASP SEQRES 15 B 202 ARG ASN ARG ALA THR MET LEU LYS ASP GLU ASN ASP LYS SEQRES 16 B 202 VAL ILE ALA ILE LYS VAL VAL SEQRES 1 C 202 MET SER ALA LEU PRO PRO VAL TYR SER PHE PRO PRO LEU SEQRES 2 C 202 TYR THR ARG GLN PRO ASN SER LEU THR ARG ARG GLN GLN SEQRES 3 C 202 ILE SER THR TRP ILE ASP ILE ILE SER GLN TYR CYS LYS SEQRES 4 C 202 THR LYS LYS ILE TRP TYR MET SER VAL ASP GLY THR VAL SEQRES 5 C 202 ILE ASN ASP ASN GLU LEU ASP SER GLY SER THR ASP ASN SEQRES 6 C 202 ASP ASP SER LYS LYS ILE SER LYS ASN LEU PHE ASN ASN SEQRES 7 C 202 GLU ASP ILE GLN ARG SER VAL SER GLN VAL PHE ILE ASP SEQRES 8 C 202 GLU ILE TRP SER GLN MET THR LYS GLU GLY LYS CYS LEU SEQRES 9 C 202 PRO ILE ASP GLN SER GLY ARG ARG SER SER ASN THR THR SEQRES 10 C 202 THR THR ARG TYR PHE ILE LEU TRP LYS SER LEU ASP SER SEQRES 11 C 202 TRP ALA SER LEU ILE LEU GLN TRP PHE GLU ASP SER GLY SEQRES 12 C 202 LYS LEU ASN GLN VAL ILE THR LEU TYR GLU LEU SER GLU SEQRES 13 C 202 GLY ASP GLU THR VAL ASN TRP GLU PHE HIS ARG MET PRO SEQRES 14 C 202 GLU SER LEU LEU TYR TYR CYS LEU LYS PRO LEU CYS ASP SEQRES 15 C 202 ARG ASN ARG ALA THR MET LEU LYS ASP GLU ASN ASP LYS SEQRES 16 C 202 VAL ILE ALA ILE LYS VAL VAL SEQRES 1 D 566 MET GLU TYR TRP HIS TYR VAL GLU THR THR SER SER GLY SEQRES 2 D 566 GLN PRO LEU LEU ARG GLU GLY GLU LYS ASP ILE PHE ILE SEQRES 3 D 566 ASP GLN SER VAL GLY LEU TYR HIS GLY LYS SER LYS ILE SEQRES 4 D 566 LEU GLN ARG GLN ARG GLY ARG ILE PHE LEU THR SER GLN SEQRES 5 D 566 ARG ILE ILE TYR ILE ASP ASP ALA LYS PRO THR GLN ASN SEQRES 6 D 566 SER LEU GLY LEU GLU LEU ASP ASP LEU ALA TYR VAL ASN SEQRES 7 D 566 TYR SER SER GLY PHE LEU THR ARG SER PRO ARG LEU ILE SEQRES 8 D 566 LEU PHE PHE LYS ASP PRO SER SER LYS ASP GLU LEU GLY SEQRES 9 D 566 LYS SER ALA GLU THR ALA SER ALA ASP VAL VAL SER THR SEQRES 10 D 566 TRP VAL CYS PRO ILE CYS MET VAL SER ASN GLU THR GLN SEQRES 11 D 566 GLY GLU PHE THR LYS ASP THR LEU PRO THR PRO ILE CYS SEQRES 12 D 566 ILE ASN CYS GLY VAL PRO ALA ASP TYR GLU LEU THR LYS SEQRES 13 D 566 SER SER ILE ASN CYS SER ASN ALA ILE ASP PRO ASN ALA SEQRES 14 D 566 ASN PRO GLN ASN GLN PHE GLY VAL ASN SER GLU ASN ILE SEQRES 15 D 566 CYS PRO ALA CYS THR PHE ALA ASN HIS PRO GLN ILE GLY SEQRES 16 D 566 ASN CYS GLU ILE CYS GLY HIS ARG LEU PRO ASN ALA SER SEQRES 17 D 566 LYS VAL ARG SER LYS LEU ASN ARG LEU ASN PHE HIS ASP SEQRES 18 D 566 SER ARG VAL HIS ILE GLU LEU GLU LYS ASN SER LEU ALA SEQRES 19 D 566 ARG ASN LYS SER SER HIS SER ALA LEU SER SER SER SER SEQRES 20 D 566 SER THR GLY SER SER THR GLU PHE VAL GLN LEU SER PHE SEQRES 21 D 566 ARG LYS SER ASP GLY VAL LEU PHE SER GLN ALA THR GLU SEQRES 22 D 566 ARG ALA LEU GLU ASN ILE LEU THR GLU LYS ASN LYS HIS SEQRES 23 D 566 ILE PHE ASN GLN ASN VAL VAL SER VAL ASN GLY VAL ASP SEQRES 24 D 566 MET ARG LYS GLY ALA SER SER HIS GLU TYR ASN ASN GLU SEQRES 25 D 566 VAL PRO PHE ILE GLU THR LYS LEU SER ARG ILE GLY ILE SEQRES 26 D 566 SER SER LEU GLU LYS SER ARG GLU ASN GLN LEU LEU ASN SEQRES 27 D 566 ASN ASP ILE LEU PHE ASN ASN ALA LEU THR ASP LEU ASN SEQRES 28 D 566 LYS LEU MET SER LEU ALA THR SER ILE GLU ARG LEU TYR SEQRES 29 D 566 LYS ASN SER ASN ILE THR MET LYS THR LYS THR LEU ASN SEQRES 30 D 566 LEU GLN ASP GLU SER THR VAL ASN GLU PRO LYS THR ARG SEQRES 31 D 566 ARG PRO LEU LEU ILE LEU ASP ARG GLU LYS PHE LEU ASN SEQRES 32 D 566 LYS GLU LEU PHE LEU ASP GLU ILE ALA ARG GLU ILE TYR SEQRES 33 D 566 GLU PHE THR LEU SER GLU PHE LYS ASP LEU ASN SER ASP SEQRES 34 D 566 THR ASN TYR MET ILE ILE THR LEU VAL ASP LEU TYR ALA SEQRES 35 D 566 MET TYR ASN LYS SER MET ARG ILE GLY THR GLY LEU ILE SEQRES 36 D 566 SER PRO MET GLU MET ARG GLU ALA CYS GLU ARG PHE GLU SEQRES 37 D 566 HIS LEU GLY LEU ASN GLU LEU LYS LEU VAL LYS VAL ASN SEQRES 38 D 566 LYS ARG ILE LEU CYS VAL THR SER GLU LYS PHE ASP VAL SEQRES 39 D 566 VAL LYS GLU LYS LEU VAL ASP LEU ILE GLY ASP ASN PRO SEQRES 40 D 566 GLY SER ASP LEU LEU ARG LEU THR GLN ILE LEU SER SER SEQRES 41 D 566 ASN ASN SER LYS SER ASN TRP THR LEU GLY ILE LEU MET SEQRES 42 D 566 GLU VAL LEU GLN ASN CYS VAL ASP GLU GLY ASP LEU LEU SEQRES 43 D 566 ILE ASP LYS GLN LEU SER GLY ILE TYR TYR TYR LYS ASN SEQRES 44 D 566 SER TYR TRP PRO SER HIS ILE HELIX 1 1 LEU A 25 HIS A 50 1 26 HELIX 2 2 ASN A 51 ALA A 56 5 6 HELIX 3 3 SER A 57 GLY A 72 1 16 HELIX 4 4 ASP A 74 PHE A 79 1 6 HELIX 5 5 LEU A 85 THR A 106 1 22 HELIX 6 6 PHE A 116 VAL A 122 1 7 HELIX 7 7 PHE A 124 ASN A 128 5 5 HELIX 8 8 GLY A 130 LEU A 141 1 12 HELIX 9 9 LYS A 142 GLU A 145 5 4 HELIX 10 10 THR A 166 CYS A 176 1 11 HELIX 11 11 SER A 183 LEU A 191 1 9 HELIX 12 12 ALA A 195 ASN A 208 1 14 HELIX 13 13 PRO A 226 ARG A 231 1 6 HELIX 14 14 PRO B 5 PHE B 10 5 6 HELIX 15 15 PHE B 10 THR B 15 5 6 HELIX 16 16 ASN B 19 LYS B 41 1 23 HELIX 17 17 PHE B 76 GLN B 82 5 7 HELIX 18 18 SER B 86 GLU B 100 1 15 HELIX 19 19 ASN B 115 THR B 118 5 4 HELIX 20 20 SER B 127 SER B 133 1 7 HELIX 21 21 LEU B 134 SER B 142 1 9 HELIX 22 22 LEU B 151 GLU B 156 1 6 HELIX 23 23 PRO B 169 LYS B 178 1 10 HELIX 24 24 PRO B 179 CYS B 181 5 3 HELIX 25 25 PRO C 5 SER C 9 5 5 HELIX 26 26 PHE C 10 THR C 15 5 6 HELIX 27 27 ASN C 19 LYS C 41 1 23 HELIX 28 28 SER C 86 GLU C 100 1 15 HELIX 29 29 ASN C 115 THR C 118 5 4 HELIX 30 30 SER C 127 GLY C 143 1 17 HELIX 31 31 THR C 150 GLU C 156 1 7 HELIX 32 32 PRO C 169 LEU C 177 1 9 HELIX 33 33 LYS C 178 CYS C 181 5 4 HELIX 34 34 ASN D 403 GLU D 422 1 20 HELIX 35 35 LEU D 437 MET D 448 1 12 HELIX 36 36 SER D 456 GLU D 465 1 10 HELIX 37 37 ARG D 466 GLY D 471 5 6 HELIX 38 38 LYS D 491 GLY D 504 1 14 HELIX 39 39 ASP D 510 SER D 519 1 10 HELIX 40 40 THR D 528 GLU D 542 1 15 SHEET 1 AA 3 VAL A 113 SER A 115 0 SHEET 2 AA 3 LYS A 155 ARG A 159 -1 O LEU A 158 N ILE A 114 SHEET 3 AA 3 GLU A 148 ILE A 152 -1 O GLU A 148 N ARG A 159 SHEET 1 AB 3 TYR A 181 SER A 182 0 SHEET 2 AB 3 LEU A 222 TRP A 224 -1 O TYR A 223 N SER A 182 SHEET 3 AB 3 TRP A 212 ASP A 214 -1 O TRP A 212 N TRP A 224 SHEET 1 BA 3 TYR B 45 SER B 47 0 SHEET 2 BA 3 ARG B 120 ILE B 123 -1 O TYR B 121 N MET B 46 SHEET 3 BA 3 CYS B 103 ILE B 106 -1 O LEU B 104 N PHE B 122 SHEET 1 BB 2 THR B 51 VAL B 52 0 SHEET 2 BB 2 LYS B 73 ASN B 74 -1 O LYS B 73 N VAL B 52 SHEET 1 BC 3 VAL B 148 THR B 150 0 SHEET 2 BC 3 LYS B 195 ALA B 198 -1 O ILE B 197 N ILE B 149 SHEET 3 BC 3 MET B 188 LYS B 190 -1 O LEU B 189 N VAL B 196 SHEET 1 CA 3 TYR C 45 SER C 47 0 SHEET 2 CA 3 ARG C 120 ILE C 123 -1 O TYR C 121 N MET C 46 SHEET 3 CA 3 CYS C 103 ILE C 106 -1 O LEU C 104 N PHE C 122 SHEET 1 CB 2 THR C 51 VAL C 52 0 SHEET 2 CB 2 LYS C 73 ASN C 74 -1 O LYS C 73 N VAL C 52 SHEET 1 CC 3 VAL C 148 ILE C 149 0 SHEET 2 CC 3 ASP C 194 ALA C 198 -1 O ILE C 197 N ILE C 149 SHEET 3 CC 3 MET C 188 ASP C 191 -1 O LEU C 189 N VAL C 196 SHEET 1 DA 3 ILE D 434 THR D 436 0 SHEET 2 DA 3 LEU D 485 THR D 488 -1 O VAL D 487 N ILE D 435 SHEET 3 DA 3 LYS D 476 LYS D 479 -1 O LYS D 476 N THR D 488 SHEET 1 DB 2 LEU D 545 GLN D 550 0 SHEET 2 DB 2 GLY D 553 LYS D 558 -1 O GLY D 553 N GLN D 550 CRYST1 149.908 149.908 186.152 90.00 90.00 90.00 P 43 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006671 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005372 0.00000 MTRIX1 1 -0.922800 -0.385200 0.009600 226.53290 MTRIX2 1 0.377500 -0.908700 -0.178400 68.77420 MTRIX3 1 0.077400 -0.161000 0.983900 19.57450