HEADER SH3 DOMAIN 25-OCT-04 1WA7 TITLE SH3 DOMAIN OF HUMAN LYN TYROSINE KINASE IN COMPLEX WITH A HERPESVIRAL TITLE 2 LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE LYN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN, RESIDUES 39-101; COMPND 5 EC: 2.7.1.112; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HYPOTHETICAL 28.7 KDA PROTEIN IN DHFR 3'REGION (ORF1); COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: TYROSINE KINASE INTERACTION PROTEIN, RESIDUES 170-191; COMPND 11 SYNONYM: TIP; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: INTRACELLULAR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-2; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SAIMIRIINE HERPESVIRUS 2; SOURCE 12 ORGANISM_COMMON: HUMAN SAIMIRIINE HERPESVIRUS 2; SOURCE 13 ORGANISM_TAXID: 10381; SOURCE 14 STRAIN: 488; SOURCE 15 VARIANT: SUBGROUP C; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS SH3 DOMAIN, LIGAND, TYROSINE KINASE, SIGNAL TRANSDUCTION, LYN, TIP, KEYWDS 2 PROTO-ONCOGENE, HYPOTHETICAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.BAUER,K.SCHWEIMER,S.HOFFMANN,P.ROESCH,H.STICHT REVDAT 4 15-MAY-24 1WA7 1 REMARK REVDAT 3 24-FEB-09 1WA7 1 VERSN REVDAT 2 13-JUL-05 1WA7 1 JRNL REVDAT 1 07-JUL-05 1WA7 0 JRNL AUTH K.SCHWEIMER,S.HOFFMANN,F.BAUER,U.FRIEDRICH,C.KARDINAL, JRNL AUTH 2 S.M.FELLER,B.BIESINGER,H.STICHT JRNL TITL STRUCTURAL INVESTIGATION OF THE BINDING OF A HERPESVIRAL JRNL TITL 2 PROTEIN TO THE SH3 DOMAIN OF TYROSINE KINASE LCK. JRNL REF BIOCHEMISTRY V. 41 5120 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 11955060 JRNL DOI 10.1021/BI015986J REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WA7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1290021410. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0; 298.0 REMARK 210 PH : 6.4; 6.4 REMARK 210 IONIC STRENGTH : 150; 150 REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% WATER/10% D2O, 2.5 MMOL/L; REMARK 210 90% WATER/10% D2O, 1.5 MMOL/L REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 13C-EDITED NOESY; 3D 15N- REMARK 210 EDITED NOESY; 3D 13C- EDITED REMARK 210 NOESY; 3D 15N-EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW REMARK 210 METHOD USED : XPLOR REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED LYNSH3 AND TIP REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 PRO A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER A 49 O LYS A 54 1.46 REMARK 500 O TRP A 45 H ILE A 58 1.54 REMARK 500 O ALA A 15 H GLY A 32 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 20 70.94 122.79 REMARK 500 1 HIS A 41 -98.32 -79.08 REMARK 500 1 GLU A 43 -25.57 -148.50 REMARK 500 1 THR A 52 29.47 -161.30 REMARK 500 1 LYS A 53 44.00 86.31 REMARK 500 1 ASN A 67 -94.22 -77.29 REMARK 500 1 ASP B 171 -57.30 -167.25 REMARK 500 1 PRO B 172 -89.71 -67.51 REMARK 500 1 MET B 174 77.35 -154.92 REMARK 500 1 THR B 176 101.09 173.47 REMARK 500 1 ARG B 182 95.62 78.41 REMARK 500 1 LEU B 186 -78.09 -65.36 REMARK 500 1 GLU B 188 -87.43 -81.20 REMARK 500 1 GLN B 190 99.67 -66.88 REMARK 500 2 ASP A 20 -53.67 107.57 REMARK 500 2 HIS A 41 -105.56 -87.57 REMARK 500 2 GLU A 43 -12.80 -157.24 REMARK 500 2 THR A 52 28.57 -160.13 REMARK 500 2 LYS A 53 44.86 86.32 REMARK 500 2 ASN A 67 -84.50 -97.35 REMARK 500 2 ASP B 171 -54.86 -172.63 REMARK 500 2 PRO B 172 -89.10 -66.87 REMARK 500 2 MET B 174 99.75 -162.14 REMARK 500 2 PRO B 175 -161.16 -77.00 REMARK 500 2 THR B 176 113.73 164.58 REMARK 500 2 LEU B 179 160.78 -47.20 REMARK 500 2 ARG B 182 81.66 80.59 REMARK 500 2 ALA B 184 62.70 37.74 REMARK 500 2 LEU B 186 -79.71 -64.54 REMARK 500 2 GLU B 188 -80.06 -75.57 REMARK 500 3 ASP A 11 -167.29 64.09 REMARK 500 3 ASP A 20 79.07 -109.80 REMARK 500 3 HIS A 41 -105.78 -85.00 REMARK 500 3 GLU A 43 -17.80 -153.92 REMARK 500 3 THR A 52 29.54 -161.38 REMARK 500 3 LYS A 53 44.91 86.45 REMARK 500 3 LEU A 66 -158.05 -75.86 REMARK 500 3 ASN A 67 121.78 76.70 REMARK 500 3 ASP B 171 -56.27 -170.48 REMARK 500 3 PRO B 172 -89.79 -67.97 REMARK 500 3 MET B 174 91.35 51.13 REMARK 500 3 PRO B 175 -161.35 -77.52 REMARK 500 3 THR B 176 102.54 -177.24 REMARK 500 3 PRO B 180 -175.00 -69.92 REMARK 500 3 ARG B 182 94.33 78.71 REMARK 500 3 LEU B 186 -80.54 -71.72 REMARK 500 3 GLU B 188 -82.86 -75.69 REMARK 500 3 ARG B 189 85.64 72.50 REMARK 500 4 HIS A 41 -106.49 -92.28 REMARK 500 4 GLU A 43 -17.04 -154.21 REMARK 500 REMARK 500 THIS ENTRY HAS 300 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG B 182 0.30 SIDE CHAIN REMARK 500 1 ARG B 189 0.24 SIDE CHAIN REMARK 500 2 ARG B 182 0.22 SIDE CHAIN REMARK 500 2 ARG B 189 0.16 SIDE CHAIN REMARK 500 3 ARG B 182 0.28 SIDE CHAIN REMARK 500 3 ARG B 189 0.27 SIDE CHAIN REMARK 500 4 ARG B 182 0.29 SIDE CHAIN REMARK 500 4 ARG B 189 0.15 SIDE CHAIN REMARK 500 5 ARG B 189 0.31 SIDE CHAIN REMARK 500 6 ARG B 189 0.18 SIDE CHAIN REMARK 500 7 ARG B 182 0.19 SIDE CHAIN REMARK 500 7 ARG B 189 0.31 SIDE CHAIN REMARK 500 8 ARG B 182 0.32 SIDE CHAIN REMARK 500 8 ARG B 189 0.31 SIDE CHAIN REMARK 500 9 ARG B 182 0.31 SIDE CHAIN REMARK 500 9 ARG B 189 0.15 SIDE CHAIN REMARK 500 10 ARG B 182 0.24 SIDE CHAIN REMARK 500 10 ARG B 189 0.27 SIDE CHAIN REMARK 500 11 ARG B 182 0.24 SIDE CHAIN REMARK 500 11 ARG B 189 0.21 SIDE CHAIN REMARK 500 12 ARG B 182 0.28 SIDE CHAIN REMARK 500 12 ARG B 189 0.19 SIDE CHAIN REMARK 500 13 ARG B 182 0.21 SIDE CHAIN REMARK 500 13 ARG B 189 0.32 SIDE CHAIN REMARK 500 14 ARG B 182 0.25 SIDE CHAIN REMARK 500 14 ARG B 189 0.30 SIDE CHAIN REMARK 500 15 ARG B 182 0.29 SIDE CHAIN REMARK 500 15 ARG B 189 0.22 SIDE CHAIN REMARK 500 16 ARG B 182 0.18 SIDE CHAIN REMARK 500 16 ARG B 189 0.32 SIDE CHAIN REMARK 500 17 ARG B 182 0.26 SIDE CHAIN REMARK 500 17 ARG B 189 0.25 SIDE CHAIN REMARK 500 18 ARG B 182 0.28 SIDE CHAIN REMARK 500 18 ARG B 189 0.30 SIDE CHAIN REMARK 500 19 ARG B 182 0.19 SIDE CHAIN REMARK 500 19 ARG B 189 0.31 SIDE CHAIN REMARK 500 20 ARG B 182 0.29 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W1F RELATED DB: PDB REMARK 900 SH3 DOMAIN OF HUMAN LYN TYROSINE KINASE REMARK 900 RELATED ID: 6456 RELATED DB: BMRB DBREF 1WA7 A 4 5 PDB 1WA7 1WA7 4 5 DBREF 1WA7 A 6 68 UNP P07948 LYN_HUMAN 39 101 DBREF 1WA7 B 170 191 UNP P22575 YDH1_SHV2C 170 191 SEQRES 1 A 65 GLY SER PRO GLU GLU GLN GLY ASP ILE VAL VAL ALA LEU SEQRES 2 A 65 TYR PRO TYR ASP GLY ILE HIS PRO ASP ASP LEU SER PHE SEQRES 3 A 65 LYS LYS GLY GLU LYS MET LYS VAL LEU GLU GLU HIS GLY SEQRES 4 A 65 GLU TRP TRP LYS ALA LYS SER LEU LEU THR LYS LYS GLU SEQRES 5 A 65 GLY PHE ILE PRO SER ASN TYR VAL ALA LYS LEU ASN THR SEQRES 1 B 22 TRP ASP PRO GLY MET PRO THR PRO PRO LEU PRO PRO ARG SEQRES 2 B 22 PRO ALA ASN LEU GLY GLU ARG GLN ALA SHEET 1 AA 5 LYS A 54 PRO A 59 0 SHEET 2 AA 5 TRP A 44 SER A 49 -1 O TRP A 45 N ILE A 58 SHEET 3 AA 5 LYS A 34 GLU A 39 -1 O LYS A 36 N LYS A 48 SHEET 4 AA 5 ILE A 12 ALA A 15 -1 O VAL A 13 N MET A 35 SHEET 5 AA 5 VAL A 63 LYS A 65 -1 O ALA A 64 N VAL A 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1