HEADER TUBERCULOSIS 25-OCT-04 1WA8 TITLE SOLUTION STRUCTURE OF THE CFP-10.ESAT-6 COMPLEX. MAJOR VIRULENCE TITLE 2 DETERMINANTS OF PATHOGENIC MYCOBACTERIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESAT-6 LIKE PROTEIN ESXB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-99; COMPND 5 SYNONYM: 10 KDA CULTURE FILTRATE ANTIGEN CFP10, SECRETED ANTIGENIC COMPND 6 PROTEIN MTSA-10; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: PRODUCED MINUS THE N-TERMINAL MET; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 6 KDA EARLY SECRETORY ANTIGENIC TARGET (ESAT-6); COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: RESIDUES 1-95; COMPND 13 SYNONYM: ESAT-6; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM BOVIS; SOURCE 3 ORGANISM_TAXID: 1765; SOURCE 4 STRAIN: AN5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 11 ORGANISM_TAXID: 83332; SOURCE 12 STRAIN: H37RV; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TUBERCULOSIS, CFP-10, ESAT-6, HELIX-TURN-HELIX, FOUR HELIX BUNDLE, KEYWDS 2 MYCOBACTERIA, PATHOGENESIS, SOLUTION STRUCTURE, PSI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC EXPDTA SOLUTION NMR NUMMDL 28 AUTHOR P.S.RENSHAW,K.L.LIGHTBODY,V.VEVERKA,F.W.MUSKETT,G.KELLY,T.A.FRENKIEL, AUTHOR 2 S.V.GORDON,R.G.HEWINSON,B.BURKE,J.NORMAN,R.A.WILLIAMSON,M.D.CARR,TB AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 5 21-AUG-19 1WA8 1 REMARK REVDAT 4 24-FEB-09 1WA8 1 VERSN REVDAT 3 08-NOV-06 1WA8 1 KEYWDS AUTHOR REMARK REVDAT 2 03-NOV-05 1WA8 1 JRNL REVDAT 1 27-JUN-05 1WA8 0 JRNL AUTH P.S.RENSHAW,K.L.LIGHTBODY,V.VEVERKA,F.W.MUSKETT,G.KELLY, JRNL AUTH 2 T.A.FRENKIEL,S.V.GORDON,R.G.HEWINSON,B.BURKE,J.NORMAN, JRNL AUTH 3 R.A.WILLIAMSON,M.D.CARR JRNL TITL STRUCTURE AND FUNCTION OF THE COMPLEX FORMED BY THE JRNL TITL 2 TUBERCULOSIS VIRULENCE FACTORS CFP-10 AND ESAT-6 JRNL REF EMBO J. V. 24 2491 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 15973432 JRNL DOI 10.1038/SJ.EMBOJ.7600732 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT,MUMENTHALER,WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 1WA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1290021408. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 90% WATER/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY REMARK 210 METHOD USED : CANDID REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 28 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 9 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED CFP-10 AND ESAT-6. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 10 H ALA A 14 1.36 REMARK 500 O ILE B 676 H ALA B 679 1.39 REMARK 500 O VAL A 31 H ALA A 35 1.50 REMARK 500 O ALA A 45 H ALA A 49 1.51 REMARK 500 O LEU B 639 H ALA B 642 1.52 REMARK 500 O GLY A 47 H GLN A 51 1.59 REMARK 500 O LEU A 38 H GLN A 41 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 -62.81 -92.67 REMARK 500 1 LYS A 4 -70.52 -101.17 REMARK 500 1 ASP A 6 124.19 -29.78 REMARK 500 1 GLU A 18 -37.29 -38.14 REMARK 500 1 ALA A 45 -81.29 66.66 REMARK 500 1 SER A 83 -54.57 -143.10 REMARK 500 1 ALA A 92 -75.40 -57.73 REMARK 500 1 TRP B 606 105.93 -173.42 REMARK 500 1 ALA B 660 -89.32 -53.23 REMARK 500 1 ALA B 662 -83.60 -53.94 REMARK 500 1 GLN B 681 -68.17 -103.86 REMARK 500 1 ALA B 682 -63.67 -99.15 REMARK 500 1 SER B 685 -79.03 -39.31 REMARK 500 1 THR B 691 -39.09 -38.62 REMARK 500 2 GLU A 2 -71.92 -119.88 REMARK 500 2 ASP A 6 139.58 -38.67 REMARK 500 2 GLU A 18 -32.56 -38.14 REMARK 500 2 ARG A 43 -90.76 -86.08 REMARK 500 2 ALA A 45 -56.96 80.46 REMARK 500 2 GLN A 51 -39.43 -39.46 REMARK 500 2 GLN A 81 10.79 -141.09 REMARK 500 2 ALA A 85 50.95 -100.09 REMARK 500 2 ALA A 92 35.46 -95.88 REMARK 500 2 MET A 97 162.80 -49.79 REMARK 500 2 GLN B 605 -38.81 -38.71 REMARK 500 2 TRP B 606 88.85 -166.10 REMARK 500 2 SER B 646 151.01 58.46 REMARK 500 2 ALA B 650 -75.83 -48.28 REMARK 500 2 ALA B 660 -89.17 -54.92 REMARK 500 2 ALA B 662 -83.91 -57.83 REMARK 500 2 MET B 683 -35.56 -39.31 REMARK 500 2 SER B 685 -85.57 -39.03 REMARK 500 2 THR B 691 -45.98 -140.72 REMARK 500 3 GLU A 2 -74.82 -95.85 REMARK 500 3 ASP A 6 150.13 -40.55 REMARK 500 3 GLU A 18 -32.09 -38.98 REMARK 500 3 ARG A 43 -82.58 -91.05 REMARK 500 3 ALA A 45 -57.81 75.78 REMARK 500 3 SER A 83 -60.62 -144.01 REMARK 500 3 SER A 95 -70.02 -41.31 REMARK 500 3 SER B 646 72.38 -113.55 REMARK 500 3 ALA B 660 -88.21 -53.34 REMARK 500 3 ALA B 662 -85.02 -54.70 REMARK 500 3 SER B 685 -86.41 -38.90 REMARK 500 3 THR B 686 139.81 179.85 REMARK 500 3 THR B 691 -29.65 -38.46 REMARK 500 3 PHE B 694 97.09 -44.24 REMARK 500 4 GLU A 2 -72.68 -100.98 REMARK 500 4 GLU A 18 -36.68 -37.79 REMARK 500 4 ALA A 45 -78.11 65.27 REMARK 500 REMARK 500 THIS ENTRY HAS 472 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV3874 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF CFP-10 IN THE UNIPROT SEQUENCE DATABASE IS REMARK 999 99 AMINO ACIDS LONG, BUT THE SEQUENCE PRESENTED IN THE REMARK 999 TUBERCULIST DATABASE AT REMARK 999 HTTP://WWW.GENOLIST.PASTEUR.FR/TUBERCULIST/ AND DESCRIBED REMARK 999 BY BERHET ET AL., MICROBIOLOGY, VOLUME 144, 3195 (1998) REMARK 999 IS 100 AMINO ACIDS LONG WITH A N-TERMINAL METHIONINE. REMARK 999 REMARK 999 THE SEQUENCE OF EAST-6 IN THE UNIPROT SEQUENCE DATABASE IS REMARK 999 94 AMINO ACIDS LONG. HOWEVER, THE DEFINING PAPER BY SORENSON REMARK 999 ET AL., INFECTION AND IMMUNITY, VOLUME 63, 1710(1995) REMARK 999 HAS A FULL LENGTH PROTEIN OF 95 AMINO ACIDS INCLUDING AN REMARK 999 N-TERMINAL METHIONINE. DBREF 1WA8 A 1 99 UNP O69739 ESXB_MYCTU 1 99 DBREF 1WA8 B 601 601 PDB 1WA8 1WA8 601 601 DBREF 1WA8 B 602 695 UNP Q57165 ESXA_MYCTU 1 94 SEQRES 1 A 99 ALA GLU MET LYS THR ASP ALA ALA THR LEU ALA GLN GLU SEQRES 2 A 99 ALA GLY ASN PHE GLU ARG ILE SER GLY ASP LEU LYS THR SEQRES 3 A 99 GLN ILE ASP GLN VAL GLU SER THR ALA GLY SER LEU GLN SEQRES 4 A 99 GLY GLN TRP ARG GLY ALA ALA GLY THR ALA ALA GLN ALA SEQRES 5 A 99 ALA VAL VAL ARG PHE GLN GLU ALA ALA ASN LYS GLN LYS SEQRES 6 A 99 GLN GLU LEU ASP GLU ILE SER THR ASN ILE ARG GLN ALA SEQRES 7 A 99 GLY VAL GLN TYR SER ARG ALA ASP GLU GLU GLN GLN GLN SEQRES 8 A 99 ALA LEU SER SER GLN MET GLY PHE SEQRES 1 B 95 MET THR GLU GLN GLN TRP ASN PHE ALA GLY ILE GLU ALA SEQRES 2 B 95 ALA ALA SER ALA ILE GLN GLY ASN VAL THR SER ILE HIS SEQRES 3 B 95 SER LEU LEU ASP GLU GLY LYS GLN SER LEU THR LYS LEU SEQRES 4 B 95 ALA ALA ALA TRP GLY GLY SER GLY SER GLU ALA TYR GLN SEQRES 5 B 95 GLY VAL GLN GLN LYS TRP ASP ALA THR ALA THR GLU LEU SEQRES 6 B 95 ASN ASN ALA LEU GLN ASN LEU ALA ARG THR ILE SER GLU SEQRES 7 B 95 ALA GLY GLN ALA MET ALA SER THR GLU GLY ASN VAL THR SEQRES 8 B 95 GLY MET PHE ALA HELIX 1 1 ALA A 7 GLN A 39 1 33 HELIX 2 2 ALA A 46 ALA A 78 1 33 HELIX 3 3 GLN B 604 TRP B 606 5 3 HELIX 4 4 PHE B 608 ALA B 640 1 33 HELIX 5 5 ALA B 641 TRP B 643 5 3 HELIX 6 6 GLU B 649 ILE B 676 1 28 HELIX 7 7 SER B 677 ALA B 679 5 3 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1