HEADER TRANSFERASE 26-OCT-04 1WAK TITLE X-RAY STRUCTURE OF SRPK1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE SPRK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 42-256,474-655; COMPND 5 SYNONYM: SRPK1, SRPK1A PROTEIN KINASE, SERINE/ARGININE-RICH PROTEIN COMPND 6 SPECIFIC KINASE 1, SR-PROTEIN-SPECIFIC KINASE 1, SFRS PROTEIN KINASE COMPND 7 1; COMPND 8 EC: 2.7.1.37, 2.7.11.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS SRPK, KINASE, SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE, KEYWDS 2 ALTERNATIVE SPLICING, ATP-BINDING, CHROMOSOME PARTITION, KEYWDS 3 DIFFERENTIATION, MRNA PROCESSING, MRNA SPLICING, NUCLEAR PROTEIN, KEYWDS 4 NUCLEOTIDE-BINDING, PHOSPHORYLATION EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NGO,J.GULLINGSRUD,S.CHAKRABARTI,B.NOLEN,B.E.AUBOL,X.D.FU, AUTHOR 2 J.A.ADAMS,J.A.MCCAMMON,G.GHOSH REVDAT 4 08-MAY-24 1WAK 1 REMARK REVDAT 3 24-FEB-09 1WAK 1 VERSN REVDAT 2 20-FEB-07 1WAK 1 AUTHOR JRNL REVDAT 1 11-JUL-06 1WAK 0 JRNL AUTH J.C.NGO,J.GULLINGSRUD,K.GIANG,M.J.YEH,X.D.FU,J.A.ADAMS, JRNL AUTH 2 J.A.MCCAMMON,G.GHOSH JRNL TITL SR PROTEIN KINASE 1 IS RESILIENT TO INACTIVATION. JRNL REF STRUCTURE V. 15 123 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17223538 JRNL DOI 10.1016/J.STR.2006.11.011 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 388359.150 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 50704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2556 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6281 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 323 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2863 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.28000 REMARK 3 B22 (A**2) : 2.28000 REMARK 3 B33 (A**2) : -4.56000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.840 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.100 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.630 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.570 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.210 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 50.30 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ALL.PAR REMARK 3 PARAMETER FILE 4 : ACETATE.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ALL.TOP REMARK 3 TOPOLOGY FILE 4 : ACETATE.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WAK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1290021429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 105.0 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 562787 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE(PH5.6), 200 MM REMARK 280 AMMONIUM ACETATE, 15%PEG 3350, PH 5.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 208.88667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.44333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 156.66500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.22167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 261.10833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 208.88667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 104.44333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.22167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 156.66500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 261.10833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 INVOLVED IN THE REGULATORY NETWORK FOR SPLICING, CONTROLLING REMARK 400 THE INTRANUCLEAR DISTRIBUTION OF SPLICING FACTORS IN REMARK 400 INTERPHASE CELLS AND THE REORGANIZATION OF NUCLEAR SPECKLES REMARK 400 DURING MITOSIS REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 42 REMARK 465 GLU A 43 REMARK 465 GLN A 44 REMARK 465 GLU A 45 REMARK 465 GLU A 46 REMARK 465 GLU A 47 REMARK 465 ILE A 48 REMARK 465 LEU A 49 REMARK 465 GLY A 50 REMARK 465 SER A 51 REMARK 465 ASP A 52 REMARK 465 ASP A 53 REMARK 465 ASP A 54 REMARK 465 GLU A 55 REMARK 465 GLN A 56 REMARK 465 GLU A 57 REMARK 465 ASP A 58 REMARK 465 PRO A 59 REMARK 465 ASN A 60 REMARK 465 ASP A 61 REMARK 465 TYR A 62 REMARK 465 GLY A 65 REMARK 465 GLY A 66 REMARK 465 GLU A 237 REMARK 465 TRP A 238 REMARK 465 GLN A 239 REMARK 465 ARG A 240 REMARK 465 SER A 241 REMARK 465 GLY A 242 REMARK 465 ALA A 243 REMARK 465 PRO A 244 REMARK 465 PRO A 245 REMARK 465 PRO A 246 REMARK 465 SER A 247 REMARK 465 GLY A 248 REMARK 465 SER A 249 REMARK 465 ALA A 250 REMARK 465 VAL A 251 REMARK 465 SER A 252 REMARK 465 THR A 253 REMARK 465 ALA A 254 REMARK 465 PRO A 255 REMARK 465 ALA A 256 REMARK 465 THR A 474 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 515 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 515 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 79 -13.25 -159.39 REMARK 500 ASP A 135 84.62 -156.49 REMARK 500 THR A 212 -4.62 69.99 REMARK 500 ASP A 213 46.74 -143.21 REMARK 500 GLN A 513 141.75 70.72 REMARK 500 ASN A 529 -159.73 -158.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1656 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1657 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1658 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1659 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1660 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WBP RELATED DB: PDB REMARK 900 SRPK1 BOUND TO 9MER DOCKING MOTIF PEPTIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN SEQUENCE FROM NCBI (PROTEIN) DBREF 1WAK A 42 256 UNP Q96SB4 SRPK1_HUMAN 42 256 DBREF 1WAK A 474 655 UNP Q96SB4 SRPK1_HUMAN 474 655 SEQRES 1 A 397 PRO GLU GLN GLU GLU GLU ILE LEU GLY SER ASP ASP ASP SEQRES 2 A 397 GLU GLN GLU ASP PRO ASN ASP TYR CYS LYS GLY GLY TYR SEQRES 3 A 397 HIS LEU VAL LYS ILE GLY ASP LEU PHE ASN GLY ARG TYR SEQRES 4 A 397 HIS VAL ILE ARG LYS LEU GLY TRP GLY HIS PHE SER THR SEQRES 5 A 397 VAL TRP LEU SER TRP ASP ILE GLN GLY LYS LYS PHE VAL SEQRES 6 A 397 ALA MET LYS VAL VAL LYS SER ALA GLU HIS TYR THR GLU SEQRES 7 A 397 THR ALA LEU ASP GLU ILE ARG LEU LEU LYS SER VAL ARG SEQRES 8 A 397 ASN SER ASP PRO ASN ASP PRO ASN ARG GLU MET VAL VAL SEQRES 9 A 397 GLN LEU LEU ASP ASP PHE LYS ILE SER GLY VAL ASN GLY SEQRES 10 A 397 THR HIS ILE CYS MET VAL PHE GLU VAL LEU GLY HIS HIS SEQRES 11 A 397 LEU LEU LYS TRP ILE ILE LYS SER ASN TYR GLN GLY LEU SEQRES 12 A 397 PRO LEU PRO CYS VAL LYS LYS ILE ILE GLN GLN VAL LEU SEQRES 13 A 397 GLN GLY LEU ASP TYR LEU HIS THR LYS CYS ARG ILE ILE SEQRES 14 A 397 HIS THR ASP ILE LYS PRO GLU ASN ILE LEU LEU SER VAL SEQRES 15 A 397 ASN GLU GLN TYR ILE ARG ARG LEU ALA ALA GLU ALA THR SEQRES 16 A 397 GLU TRP GLN ARG SER GLY ALA PRO PRO PRO SER GLY SER SEQRES 17 A 397 ALA VAL SER THR ALA PRO ALA THR ALA GLY ASN PHE LEU SEQRES 18 A 397 VAL ASN PRO LEU GLU PRO LYS ASN ALA GLU LYS LEU LYS SEQRES 19 A 397 VAL LYS ILE ALA ASP LEU GLY ASN ALA CYS TRP VAL HIS SEQRES 20 A 397 LYS HIS PHE THR GLU ASP ILE GLN THR ARG GLN TYR ARG SEQRES 21 A 397 SER LEU GLU VAL LEU ILE GLY SER GLY TYR ASN THR PRO SEQRES 22 A 397 ALA ASP ILE TRP SER THR ALA CYS MET ALA PHE GLU LEU SEQRES 23 A 397 ALA THR GLY ASP TYR LEU PHE GLU PRO HIS SER GLY GLU SEQRES 24 A 397 GLU TYR THR ARG ASP GLU ASP HIS ILE ALA LEU ILE ILE SEQRES 25 A 397 GLU LEU LEU GLY LYS VAL PRO ARG LYS LEU ILE VAL ALA SEQRES 26 A 397 GLY LYS TYR SER LYS GLU PHE PHE THR LYS LYS GLY ASP SEQRES 27 A 397 LEU LYS HIS ILE THR LYS LEU LYS PRO TRP GLY LEU PHE SEQRES 28 A 397 GLU VAL LEU VAL GLU LYS TYR GLU TRP SER GLN GLU GLU SEQRES 29 A 397 ALA ALA GLY PHE THR ASP PHE LEU LEU PRO MET LEU GLU SEQRES 30 A 397 LEU ILE PRO GLU LYS ARG ALA THR ALA ALA GLU CYS LEU SEQRES 31 A 397 ARG HIS PRO TRP LEU ASN SER HET EDO A1656 4 HET EDO A1657 4 HET EDO A1658 4 HET EDO A1659 4 HET EDO A1660 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 5(C2 H6 O2) FORMUL 7 HOH *297(H2 O) HELIX 1 1 ALA A 114 SER A 134 1 21 HELIX 2 2 ASP A 138 MET A 143 5 6 HELIX 3 3 HIS A 171 SER A 179 1 9 HELIX 4 4 PRO A 185 LYS A 206 1 22 HELIX 5 5 LYS A 215 GLU A 217 5 3 HELIX 6 6 ASN A 224 THR A 236 1 13 HELIX 7 7 GLU A 484 LEU A 491 5 8 HELIX 8 8 ASP A 497 ALA A 501 5 5 HELIX 9 9 THR A 514 ARG A 518 5 5 HELIX 10 10 SER A 519 GLY A 525 1 7 HELIX 11 11 THR A 530 GLY A 547 1 18 HELIX 12 12 THR A 560 GLY A 574 1 15 HELIX 13 13 PRO A 577 GLY A 584 1 8 HELIX 14 14 TYR A 586 PHE A 590 5 5 HELIX 15 15 GLY A 607 LYS A 615 1 9 HELIX 16 16 SER A 619 LEU A 631 1 13 HELIX 17 17 PRO A 632 GLU A 635 5 4 HELIX 18 18 ILE A 637 ARG A 641 5 5 HELIX 19 19 THR A 643 ARG A 649 1 7 HELIX 20 20 HIS A 650 SER A 655 5 6 SHEET 1 AA 6 LEU A 75 PHE A 76 0 SHEET 2 AA 6 TYR A 80 TRP A 88 -1 O TYR A 80 N PHE A 76 SHEET 3 AA 6 SER A 92 ASP A 99 -1 O VAL A 94 N LEU A 86 SHEET 4 AA 6 LYS A 104 VAL A 111 -1 O LYS A 104 N ASP A 99 SHEET 5 AA 6 GLY A 158 PHE A 165 -1 O ILE A 161 N VAL A 111 SHEET 6 AA 6 LEU A 147 GLY A 155 -1 N LEU A 148 O VAL A 164 SHEET 1 AB 2 ILE A 209 ILE A 210 0 SHEET 2 AB 2 CYS A 502 TRP A 503 -1 O CYS A 502 N ILE A 210 SHEET 1 AC 2 ILE A 219 LEU A 221 0 SHEET 2 AC 2 VAL A 493 ILE A 495 -1 O LYS A 494 N LEU A 220 SITE 1 AC1 5 TYR A 67 HIS A 68 LEU A 69 GLY A 155 SITE 2 AC1 5 VAL A 156 SITE 1 AC2 3 ASP A 564 LEU A 568 GLU A 571 SITE 1 AC3 6 PHE A 542 TYR A 549 LEU A 550 TRP A 606 SITE 2 AC3 6 LYS A 615 TYR A 616 SITE 1 AC4 4 GLN A 198 LEU A 648 HOH A2080 HOH A2294 SITE 1 AC5 4 HIS A 81 PHE A 609 VAL A 613 GLN A 620 CRYST1 75.113 75.113 313.330 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013313 0.007686 0.000000 0.00000 SCALE2 0.000000 0.015373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003192 0.00000