HEADER ISOMERASE 27-OCT-04 1WAM TITLE STRUCTURE OF UDP-GALACTOPYRANOSE MUTASE FROM KLEBSIELLA PNEUMONIAE TITLE 2 WITH FADH- COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GALACTOPYRANOSE MUTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.4.99.9; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: REDUCED FAD SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PEHISTEV KEYWDS FAD, FLAVOPROTEIN, ISOMERASE, LIPOPOLYSACCHARIDE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR K.BEIS,V.SRIKANNATHASAN,J.H.NAISMITH REVDAT 6 13-DEC-23 1WAM 1 REMARK REVDAT 5 28-JUN-17 1WAM 1 REMARK REVDAT 4 15-APR-15 1WAM 1 JRNL REVDAT 3 13-JUL-11 1WAM 1 VERSN REVDAT 2 24-FEB-09 1WAM 1 VERSN REVDAT 1 24-MAY-06 1WAM 0 JRNL AUTH K.BEIS,V.SRIKANNATHASAN,H.LIU,S.W.B.FULLERTON,V.A.BAMFORD, JRNL AUTH 2 D.A.R.SANDERS,C.WHITFIELD,M.R.MCNEIL,J.H.NAISMITH JRNL TITL CRYSTAL STRUCTURES OF MYCOBACTERIA TUBERCULOSIS AND JRNL TITL 2 KLEBSIELLA PNEUMONIAE UDP-GALACTOPYRANOSE MUTASE IN THE JRNL TITL 3 OXIDISED STATE AND KLEBSIELLA PNEUMONIAE UDP-GALACTOPYRANOSE JRNL TITL 4 MUTASE IN THE (ACTIVE) REDUCED STATE. JRNL REF J.MOL.BIOL. V. 348 971 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15843027 JRNL DOI 10.1016/J.JMB.2005.02.057 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0007 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 17405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 914 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1265 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3077 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : -0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.411 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.277 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.976 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3217 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4366 ; 1.630 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 375 ; 7.406 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;36.577 ;24.036 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 525 ;20.002 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.210 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 452 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2494 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1407 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2101 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 157 ; 0.208 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.154 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.210 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1916 ; 0.657 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3031 ; 1.133 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1503 ; 1.820 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1335 ; 2.706 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 383 REMARK 3 ORIGIN FOR THE GROUP (A): -28.4242 -1.3982 -11.6798 REMARK 3 T TENSOR REMARK 3 T11: -0.0637 T22: -0.0529 REMARK 3 T33: -0.0633 T12: 0.0643 REMARK 3 T13: -0.0353 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.5659 L22: 0.4977 REMARK 3 L33: 1.3050 L12: -0.3411 REMARK 3 L13: -0.8980 L23: 0.1919 REMARK 3 S TENSOR REMARK 3 S11: -0.1724 S12: -0.2265 S13: -0.1172 REMARK 3 S21: 0.1371 S22: 0.1142 S23: 0.0026 REMARK 3 S31: 0.0943 S32: 0.2212 S33: 0.0582 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES MET1, LYS2, SER127, THR128, ILE129, ALA130 REMARK 3 WERE OMITTED FROM THE BUILDING DUE TO POOR DENSITY REMARK 4 REMARK 4 1WAM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1290021427. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 93.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CU REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18331 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 28.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1USJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH6.5, 50MM CACL2, 30% REMARK 280 PEG550, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.20600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.60300 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.60300 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.20600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 FUNCTION: INVOLVED IN THE CONVERSION OF UDP-GALP INTO UDP-GALF REMARK 400 THROUGH A 2-KETO INTERMEDIATE. REMARK 400 CATALYTIC ACTIVITY: UDP-D-GALACTOPYRANOSE = UDP-D-GALACTO-1,4- REMARK 400 FURANOSE. REMARK 400 PATHWAY: LIPOPOLYSACCHARIDE O ANTIGEN BIOSYNTHESIS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 SER A 127 REMARK 465 THR A 128 REMARK 465 ILE A 129 REMARK 465 ALA A 130 REMARK 465 ARG A 384 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 372 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 272 O HOH A 2074 2.06 REMARK 500 O HOH A 2092 O HOH A 2099 2.13 REMARK 500 O GLY A 125 O HOH A 2036 2.17 REMARK 500 O ASP A 47 O THR A 50 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 51 33.34 -90.48 REMARK 500 VAL A 90 143.78 -176.99 REMARK 500 SER A 109 62.75 32.85 REMARK 500 PRO A 132 -86.43 -10.02 REMARK 500 SER A 170 178.67 -55.14 REMARK 500 ILE A 171 -14.24 69.42 REMARK 500 PHE A 179 45.77 -93.34 REMARK 500 HIS A 229 147.96 -171.36 REMARK 500 SER A 288 64.62 -119.82 REMARK 500 GLU A 307 -163.99 -73.83 REMARK 500 ASN A 309 3.63 95.47 REMARK 500 TYR A 313 -73.09 -115.61 REMARK 500 GLU A 372 -130.23 -84.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 141 PHE A 142 144.80 REMARK 500 ASN A 373 GLN A 374 -137.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1384 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BI7 RELATED DB: PDB REMARK 900 UDP-GALACTOPYRANOSE MUTASE FROM KLEBSIELLA PNEUMONIAE OXIDISED FAD REMARK 900 RELATED ID: 2BI8 RELATED DB: PDB REMARK 900 UDP-GALACTOPYRANOSE MUTASE FROM KLEBSIELLA PNEUMONIAE WITH REDUCED REMARK 900 FAD DBREF 1WAM A 1 384 UNP Q48485 GLF1_KLEPN 1 384 SEQADV 1WAM GLU A 138 UNP Q48485 GLN 138 CONFLICT SEQADV 1WAM GLN A 262 UNP Q48485 ASP 262 CONFLICT SEQRES 1 A 384 MET LYS SER LYS LYS ILE LEU ILE VAL GLY ALA GLY PHE SEQRES 2 A 384 SER GLY ALA VAL ILE GLY ARG GLN LEU ALA GLU LYS GLY SEQRES 3 A 384 HIS GLN VAL HIS ILE ILE ASP GLN ARG ASP HIS ILE GLY SEQRES 4 A 384 GLY ASN SER TYR ASP ALA ARG ASP SER GLU THR ASN VAL SEQRES 5 A 384 MET VAL HIS VAL TYR GLY PRO HIS ILE PHE HIS THR ASP SEQRES 6 A 384 ASN GLU THR VAL TRP ASN TYR VAL ASN LYS HIS ALA GLU SEQRES 7 A 384 MET MET PRO TYR VAL ASN ARG VAL LYS ALA THR VAL ASN SEQRES 8 A 384 GLY GLN VAL PHE SER LEU PRO ILE ASN LEU HIS THR ILE SEQRES 9 A 384 ASN GLN PHE PHE SER LYS THR CYS SER PRO ASP GLU ALA SEQRES 10 A 384 ARG ALA LEU ILE ALA GLU LYS GLY ASP SER THR ILE ALA SEQRES 11 A 384 ASP PRO GLN THR PHE GLU GLU GLU ALA LEU ARG PHE ILE SEQRES 12 A 384 GLY LYS GLU LEU TYR GLU ALA PHE PHE LYS GLY TYR THR SEQRES 13 A 384 ILE LYS GLN TRP GLY MET GLN PRO SER GLU LEU PRO ALA SEQRES 14 A 384 SER ILE LEU LYS ARG LEU PRO VAL ARG PHE ASN TYR ASP SEQRES 15 A 384 ASP ASN TYR PHE ASN HIS LYS PHE GLN GLY MET PRO LYS SEQRES 16 A 384 CYS GLY TYR THR GLN MET ILE LYS SER ILE LEU ASN HIS SEQRES 17 A 384 GLU ASN ILE LYS VAL ASP LEU GLN ARG GLU PHE ILE VAL SEQRES 18 A 384 GLU GLU ARG THR HIS TYR ASP HIS VAL PHE TYR SER GLY SEQRES 19 A 384 PRO LEU ASP ALA PHE TYR GLY TYR GLN TYR GLY ARG LEU SEQRES 20 A 384 GLY TYR ARG THR LEU ASP PHE LYS LYS PHE THR TYR GLN SEQRES 21 A 384 GLY GLN TYR GLN GLY CYS ALA VAL MET ASN TYR CYS SER SEQRES 22 A 384 VAL ASP VAL PRO TYR THR ARG ILE THR GLU HIS LYS TYR SEQRES 23 A 384 PHE SER PRO TRP GLU GLN HIS ASP GLY SER VAL CYS TYR SEQRES 24 A 384 LYS GLU TYR SER ARG ALA CYS GLU GLU ASN ASP ILE PRO SEQRES 25 A 384 TYR TYR PRO ILE ARG GLN MET GLY GLU MET ALA LEU LEU SEQRES 26 A 384 GLU LYS TYR LEU SER LEU ALA GLU ASN GLU THR ASN ILE SEQRES 27 A 384 THR PHE VAL GLY ARG LEU GLY THR TYR ARG TYR LEU ASP SEQRES 28 A 384 MET ASP VAL THR ILE ALA GLU ALA LEU LYS THR ALA GLU SEQRES 29 A 384 VAL TYR LEU ASN SER LEU THR GLU ASN GLN PRO MET PRO SEQRES 30 A 384 VAL PHE THR VAL SER VAL ARG HET FAD A1384 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *116(H2 O) HELIX 1 1 GLY A 12 LYS A 25 1 14 HELIX 2 2 GLY A 39 SER A 42 5 4 HELIX 3 3 ASN A 66 LYS A 75 1 10 HELIX 4 4 ASN A 100 PHE A 108 1 9 HELIX 5 5 SER A 113 GLU A 123 1 11 HELIX 6 6 GLY A 144 PHE A 152 1 9 HELIX 7 7 PHE A 152 GLY A 161 1 10 HELIX 8 8 CYS A 196 LEU A 206 1 11 HELIX 9 9 ILE A 220 TYR A 227 5 8 HELIX 10 10 PRO A 235 TYR A 240 1 6 HELIX 11 11 LYS A 285 SER A 288 5 4 HELIX 12 12 GLN A 318 GLU A 333 1 16 HELIX 13 13 VAL A 341 THR A 346 1 6 HELIX 14 14 ASP A 351 GLU A 372 1 22 SHEET 1 AA 5 ILE A 211 ASP A 214 0 SHEET 2 AA 5 GLN A 28 ILE A 32 1 O VAL A 29 N LYS A 212 SHEET 3 AA 5 LYS A 5 VAL A 9 1 O ILE A 6 N HIS A 30 SHEET 4 AA 5 HIS A 229 TYR A 232 1 O HIS A 229 N LEU A 7 SHEET 5 AA 5 ILE A 338 PHE A 340 1 O THR A 339 N TYR A 232 SHEET 1 AB 2 ASP A 44 ARG A 46 0 SHEET 2 AB 2 MET A 53 HIS A 55 -1 O VAL A 54 N ALA A 45 SHEET 1 AC 3 PHE A 62 THR A 64 0 SHEET 2 AC 3 PHE A 190 PRO A 194 -1 O PHE A 190 N THR A 64 SHEET 3 AC 3 MET A 79 PRO A 81 -1 O MET A 80 N MET A 193 SHEET 1 AD 7 GLN A 93 LEU A 97 0 SHEET 2 AD 7 VAL A 86 VAL A 90 -1 O VAL A 86 N LEU A 97 SHEET 3 AD 7 VAL A 268 TYR A 271 1 O VAL A 268 N LYS A 87 SHEET 4 AD 7 ARG A 280 GLU A 283 -1 O ILE A 281 N MET A 269 SHEET 5 AD 7 GLY A 295 ALA A 305 -1 O TYR A 299 N THR A 282 SHEET 6 AD 7 TYR A 249 GLN A 260 -1 O THR A 251 N ARG A 304 SHEET 7 AD 7 TYR A 314 PRO A 315 -1 O TYR A 314 N ARG A 250 CISPEP 1 LEU A 97 PRO A 98 0 -5.82 SITE 1 AC1 35 VAL A 9 GLY A 10 GLY A 12 PHE A 13 SITE 2 AC1 35 SER A 14 ASP A 33 GLN A 34 ARG A 35 SITE 3 AC1 35 GLY A 40 ASN A 41 SER A 42 PRO A 59 SITE 4 AC1 35 HIS A 60 ILE A 61 ARG A 217 GLU A 218 SITE 5 AC1 35 PHE A 219 SER A 233 GLY A 234 LEU A 252 SITE 6 AC1 35 TYR A 313 TYR A 314 GLY A 342 ARG A 343 SITE 7 AC1 35 TYR A 349 LEU A 350 ASP A 351 MET A 352 SITE 8 AC1 35 THR A 355 HOH A2005 HOH A2007 HOH A2009 SITE 9 AC1 35 HOH A2015 HOH A2069 HOH A2116 CRYST1 85.997 85.997 100.809 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011628 0.006714 0.000000 0.00000 SCALE2 0.000000 0.013427 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009920 0.00000