data_1WD5 # _entry.id 1WD5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1WD5 RCSB RCSB023449 WWPDB D_1000023449 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ttk003001426 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WD5 _pdbx_database_status.recvd_initial_deposition_date 2004-05-11 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shibata, R.' 1 'Kukimoto-Niino, M.' 2 'Murayama, K.' 3 'Shirouzu, M.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Crystal structure of a predicted phosphoribosyltransferase (TT1426) from Thermus thermophilus HB8 at 2.01 A resolution' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 14 _citation.page_first 823 _citation.page_last 827 _citation.year 2005 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15689504 _citation.pdbx_database_id_DOI 10.1110/ps.041229405 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kukimoto-Niino, M.' 1 primary 'Shibata, R.' 2 primary 'Murayama, K.' 3 primary 'Hamana, H.' 4 primary 'Nishimoto, M.' 5 primary 'Bessho, Y.' 6 primary 'Terada, T.' 7 primary 'Shirouzu, M.' 8 primary 'Kuramitsu, S.' 9 primary 'Yokoyama, S.' 10 # _cell.entry_id 1WD5 _cell.length_a 103.970 _cell.length_b 103.970 _cell.length_c 51.287 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WD5 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein TT1426' 22551.406 1 ? ? ? ? 2 non-polymer syn '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 195.237 1 ? ? ? ? 3 water nat water 18.015 224 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)RFRDRRHAGALLAEALAPLGLEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAPGNPEFALGAVGEGGEL VL(MSE)PYALRYADQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRDVVLVDDGVATGAS(MSE)EAALSVVFQEGP RRVVVAVPVASPEAVERLKARAEVVALSVPQDFAAVGAYYLDFGEVTDEDVEAILLEWAG ; _entity_poly.pdbx_seq_one_letter_code_can ;MRFRDRRHAGALLAEALAPLGLEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAPGNPEFALGAVGEGGELVLMP YALRYADQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPVASP EAVERLKARAEVVALSVPQDFAAVGAYYLDFGEVTDEDVEAILLEWAG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ttk003001426 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ARG n 1 3 PHE n 1 4 ARG n 1 5 ASP n 1 6 ARG n 1 7 ARG n 1 8 HIS n 1 9 ALA n 1 10 GLY n 1 11 ALA n 1 12 LEU n 1 13 LEU n 1 14 ALA n 1 15 GLU n 1 16 ALA n 1 17 LEU n 1 18 ALA n 1 19 PRO n 1 20 LEU n 1 21 GLY n 1 22 LEU n 1 23 GLU n 1 24 ALA n 1 25 PRO n 1 26 VAL n 1 27 VAL n 1 28 LEU n 1 29 GLY n 1 30 LEU n 1 31 PRO n 1 32 ARG n 1 33 GLY n 1 34 GLY n 1 35 VAL n 1 36 VAL n 1 37 VAL n 1 38 ALA n 1 39 ASP n 1 40 GLU n 1 41 VAL n 1 42 ALA n 1 43 ARG n 1 44 ARG n 1 45 LEU n 1 46 GLY n 1 47 GLY n 1 48 GLU n 1 49 LEU n 1 50 ASP n 1 51 VAL n 1 52 VAL n 1 53 LEU n 1 54 VAL n 1 55 ARG n 1 56 LYS n 1 57 VAL n 1 58 GLY n 1 59 ALA n 1 60 PRO n 1 61 GLY n 1 62 ASN n 1 63 PRO n 1 64 GLU n 1 65 PHE n 1 66 ALA n 1 67 LEU n 1 68 GLY n 1 69 ALA n 1 70 VAL n 1 71 GLY n 1 72 GLU n 1 73 GLY n 1 74 GLY n 1 75 GLU n 1 76 LEU n 1 77 VAL n 1 78 LEU n 1 79 MSE n 1 80 PRO n 1 81 TYR n 1 82 ALA n 1 83 LEU n 1 84 ARG n 1 85 TYR n 1 86 ALA n 1 87 ASP n 1 88 GLN n 1 89 SER n 1 90 TYR n 1 91 LEU n 1 92 GLU n 1 93 ARG n 1 94 GLU n 1 95 ALA n 1 96 ALA n 1 97 ARG n 1 98 GLN n 1 99 ARG n 1 100 ASP n 1 101 VAL n 1 102 LEU n 1 103 ARG n 1 104 LYS n 1 105 ARG n 1 106 ALA n 1 107 GLU n 1 108 ARG n 1 109 TYR n 1 110 ARG n 1 111 ARG n 1 112 VAL n 1 113 ARG n 1 114 PRO n 1 115 LYS n 1 116 ALA n 1 117 ALA n 1 118 ARG n 1 119 LYS n 1 120 GLY n 1 121 ARG n 1 122 ASP n 1 123 VAL n 1 124 VAL n 1 125 LEU n 1 126 VAL n 1 127 ASP n 1 128 ASP n 1 129 GLY n 1 130 VAL n 1 131 ALA n 1 132 THR n 1 133 GLY n 1 134 ALA n 1 135 SER n 1 136 MSE n 1 137 GLU n 1 138 ALA n 1 139 ALA n 1 140 LEU n 1 141 SER n 1 142 VAL n 1 143 VAL n 1 144 PHE n 1 145 GLN n 1 146 GLU n 1 147 GLY n 1 148 PRO n 1 149 ARG n 1 150 ARG n 1 151 VAL n 1 152 VAL n 1 153 VAL n 1 154 ALA n 1 155 VAL n 1 156 PRO n 1 157 VAL n 1 158 ALA n 1 159 SER n 1 160 PRO n 1 161 GLU n 1 162 ALA n 1 163 VAL n 1 164 GLU n 1 165 ARG n 1 166 LEU n 1 167 LYS n 1 168 ALA n 1 169 ARG n 1 170 ALA n 1 171 GLU n 1 172 VAL n 1 173 VAL n 1 174 ALA n 1 175 LEU n 1 176 SER n 1 177 VAL n 1 178 PRO n 1 179 GLN n 1 180 ASP n 1 181 PHE n 1 182 ALA n 1 183 ALA n 1 184 VAL n 1 185 GLY n 1 186 ALA n 1 187 TYR n 1 188 TYR n 1 189 LEU n 1 190 ASP n 1 191 PHE n 1 192 GLY n 1 193 GLU n 1 194 VAL n 1 195 THR n 1 196 ASP n 1 197 GLU n 1 198 ASP n 1 199 VAL n 1 200 GLU n 1 201 ALA n 1 202 ILE n 1 203 LEU n 1 204 LEU n 1 205 GLU n 1 206 TRP n 1 207 ALA n 1 208 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5SIB2_THET8 _struct_ref.pdbx_db_accession Q5SIB2 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WD5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 208 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5SIB2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 208 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 208 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MES non-polymer . '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' ? 'C6 H13 N O4 S' 195.237 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1WD5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.1 _exptl_crystal.density_percent_sol 59.8 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2004-04-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97910 1.0 2 0.97938 1.0 3 0.97400 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97910, 0.97938, 0.97400' # _reflns.entry_id 1WD5 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.00 _reflns.number_obs 31382 _reflns.number_all ? _reflns.percent_possible_obs 95.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.107 _reflns.pdbx_netI_over_sigmaI 15.37 _reflns.B_iso_Wilson_estimate 6.6 _reflns.pdbx_redundancy 7.38 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.08 _reflns_shell.percent_possible_all 67.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.303 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1WD5 _refine.ls_number_reflns_obs 18107 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 219596.22 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.76 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 88.1 _refine.ls_R_factor_obs 0.195 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.195 _refine.ls_R_factor_R_free 0.227 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 1530 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 21.9 _refine.aniso_B[1][1] 4.50 _refine.aniso_B[2][2] 4.50 _refine.aniso_B[3][3] -8.99 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.36348 _refine.solvent_model_param_bsol 57.8 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1WD5 _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.20 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.20 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1578 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 224 _refine_hist.number_atoms_total 1814 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 36.76 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.74 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.22 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.89 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.37 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.46 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 2561 _refine_ls_shell.R_factor_R_work 0.252 _refine_ls_shell.percent_reflns_obs 44.4 _refine_ls_shell.R_factor_R_free 0.297 _refine_ls_shell.R_factor_R_free_error 0.028 _refine_ls_shell.percent_reflns_R_free 4.2 _refine_ls_shell.number_reflns_R_free 113 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 MES.PARAM MES.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1WD5 _struct.title 'Crystal structure of TT1426 from Thermus thermophilus HB8' _struct.pdbx_descriptor 'hypothetical protein TT1426' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WD5 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'structural genomics, hypothetical protein, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 5 ? ALA A 18 ? ASP A 5 ALA A 18 1 ? 14 HELX_P HELX_P2 2 PRO A 19 ? GLY A 21 ? PRO A 19 GLY A 21 5 ? 3 HELX_P HELX_P3 3 ARG A 32 ? GLY A 46 ? ARG A 32 GLY A 46 1 ? 15 HELX_P HELX_P4 4 TYR A 81 ? ALA A 86 ? TYR A 81 ALA A 86 1 ? 6 HELX_P HELX_P5 5 ASP A 87 ? ARG A 113 ? ASP A 87 ARG A 113 1 ? 27 HELX_P HELX_P6 6 GLY A 133 ? GLN A 145 ? GLY A 133 GLN A 145 1 ? 13 HELX_P HELX_P7 7 SER A 159 ? ALA A 168 ? SER A 159 ALA A 168 1 ? 10 HELX_P HELX_P8 8 ALA A 183 ? TYR A 188 ? ALA A 183 TYR A 188 5 ? 6 HELX_P HELX_P9 9 THR A 195 ? GLU A 205 ? THR A 195 GLU A 205 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 1 C ? ? ? 1_555 A ARG 2 N ? ? A MSE 1 A ARG 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A LEU 78 C ? ? ? 1_555 A MSE 79 N ? ? A LEU 78 A MSE 79 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A MSE 79 C ? ? ? 1_555 A PRO 80 N ? ? A MSE 79 A PRO 80 1_555 ? ? ? ? ? ? ? 1.343 ? covale4 covale ? ? A SER 135 C ? ? ? 1_555 A MSE 136 N ? ? A SER 135 A MSE 136 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? A MSE 136 C ? ? ? 1_555 A GLU 137 N ? ? A MSE 136 A GLU 137 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 31 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 31 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ARG _struct_mon_prot_cis.pdbx_label_seq_id_2 32 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ARG _struct_mon_prot_cis.pdbx_auth_seq_id_2 32 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 48 ? VAL A 51 ? GLU A 48 VAL A 51 A 2 VAL A 26 ? GLY A 29 ? VAL A 26 GLY A 29 A 3 ASP A 122 ? VAL A 126 ? ASP A 122 VAL A 126 A 4 ARG A 150 ? VAL A 157 ? ARG A 150 VAL A 157 A 5 GLU A 171 ? SER A 176 ? GLU A 171 SER A 176 B 1 VAL A 54 ? ALA A 59 ? VAL A 54 ALA A 59 B 2 ASN A 62 ? GLY A 71 ? ASN A 62 GLY A 71 B 3 LEU A 76 ? LEU A 78 ? LEU A 76 LEU A 78 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 48 ? O GLU A 48 N VAL A 27 ? N VAL A 27 A 2 3 N LEU A 28 ? N LEU A 28 O VAL A 124 ? O VAL A 124 A 3 4 N LEU A 125 ? N LEU A 125 O ALA A 154 ? O ALA A 154 A 4 5 N VAL A 153 ? N VAL A 153 O VAL A 173 ? O VAL A 173 B 1 2 N VAL A 57 ? N VAL A 57 O LEU A 67 ? O LEU A 67 B 2 3 N ALA A 69 ? N ALA A 69 O VAL A 77 ? O VAL A 77 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MES A 2955' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LEU A 12 ? LEU A 12 . ? 1_555 ? 2 AC1 6 GLU A 15 ? GLU A 15 . ? 1_555 ? 3 AC1 6 TYR A 90 ? TYR A 90 . ? 1_554 ? 4 AC1 6 ARG A 93 ? ARG A 93 . ? 1_554 ? 5 AC1 6 ARG A 97 ? ARG A 97 . ? 1_554 ? 6 AC1 6 HOH C . ? HOH A 1170 . ? 1_555 ? # _database_PDB_matrix.entry_id 1WD5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WD5 _atom_sites.fract_transf_matrix[1][1] 0.009618 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009618 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019498 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 MSE 79 79 79 MSE MSE A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 TYR 109 109 109 TYR TYR A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 ASP 122 122 122 ASP ASP A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 VAL 124 124 124 VAL VAL A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 THR 132 132 132 THR THR A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 SER 135 135 135 SER SER A . n A 1 136 MSE 136 136 136 MSE MSE A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 ALA 138 138 138 ALA ALA A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 GLN 145 145 145 GLN GLN A . n A 1 146 GLU 146 146 146 GLU GLU A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 PRO 156 156 156 PRO PRO A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 SER 159 159 159 SER SER A . n A 1 160 PRO 160 160 160 PRO PRO A . n A 1 161 GLU 161 161 161 GLU GLU A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 GLU 164 164 164 GLU GLU A . n A 1 165 ARG 165 165 165 ARG ARG A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 LYS 167 167 167 LYS LYS A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 ARG 169 169 169 ARG ARG A . n A 1 170 ALA 170 170 170 ALA ALA A . n A 1 171 GLU 171 171 171 GLU GLU A . n A 1 172 VAL 172 172 172 VAL VAL A . n A 1 173 VAL 173 173 173 VAL VAL A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 SER 176 176 176 SER SER A . n A 1 177 VAL 177 177 177 VAL VAL A . n A 1 178 PRO 178 178 178 PRO PRO A . n A 1 179 GLN 179 179 179 GLN GLN A . n A 1 180 ASP 180 180 180 ASP ASP A . n A 1 181 PHE 181 181 181 PHE PHE A . n A 1 182 ALA 182 182 182 ALA ALA A . n A 1 183 ALA 183 183 183 ALA ALA A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 GLY 185 185 185 GLY GLY A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 TYR 187 187 187 TYR TYR A . n A 1 188 TYR 188 188 188 TYR TYR A . n A 1 189 LEU 189 189 189 LEU LEU A . n A 1 190 ASP 190 190 190 ASP ASP A . n A 1 191 PHE 191 191 191 PHE PHE A . n A 1 192 GLY 192 192 192 GLY GLY A . n A 1 193 GLU 193 193 193 GLU GLU A . n A 1 194 VAL 194 194 194 VAL VAL A . n A 1 195 THR 195 195 195 THR THR A . n A 1 196 ASP 196 196 196 ASP ASP A . n A 1 197 GLU 197 197 197 GLU GLU A . n A 1 198 ASP 198 198 198 ASP ASP A . n A 1 199 VAL 199 199 199 VAL VAL A . n A 1 200 GLU 200 200 200 GLU GLU A . n A 1 201 ALA 201 201 201 ALA ALA A . n A 1 202 ILE 202 202 202 ILE ILE A . n A 1 203 LEU 203 203 203 LEU LEU A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 GLU 205 205 205 GLU GLU A . n A 1 206 TRP 206 206 206 TRP TRP A . n A 1 207 ALA 207 207 207 ALA ALA A . n A 1 208 GLY 208 208 208 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MES 1 2955 2955 MES MES A . C 3 HOH 1 1001 1001 HOH HOH A . C 3 HOH 2 1002 1002 HOH HOH A . C 3 HOH 3 1003 1003 HOH HOH A . C 3 HOH 4 1004 1004 HOH HOH A . C 3 HOH 5 1005 1005 HOH HOH A . C 3 HOH 6 1006 1006 HOH HOH A . C 3 HOH 7 1007 1007 HOH HOH A . C 3 HOH 8 1008 1008 HOH HOH A . C 3 HOH 9 1009 1009 HOH HOH A . C 3 HOH 10 1010 1010 HOH HOH A . C 3 HOH 11 1011 1011 HOH HOH A . C 3 HOH 12 1012 1012 HOH HOH A . C 3 HOH 13 1013 1013 HOH HOH A . C 3 HOH 14 1014 1014 HOH HOH A . C 3 HOH 15 1015 1015 HOH HOH A . C 3 HOH 16 1016 1016 HOH HOH A . C 3 HOH 17 1017 1017 HOH HOH A . C 3 HOH 18 1018 1018 HOH HOH A . C 3 HOH 19 1019 1019 HOH HOH A . C 3 HOH 20 1020 1020 HOH HOH A . C 3 HOH 21 1021 1021 HOH HOH A . C 3 HOH 22 1022 1022 HOH HOH A . C 3 HOH 23 1023 1023 HOH HOH A . C 3 HOH 24 1024 1024 HOH HOH A . C 3 HOH 25 1025 1025 HOH HOH A . C 3 HOH 26 1026 1026 HOH HOH A . C 3 HOH 27 1028 1028 HOH HOH A . C 3 HOH 28 1029 1029 HOH HOH A . C 3 HOH 29 1030 1030 HOH HOH A . C 3 HOH 30 1031 1031 HOH HOH A . C 3 HOH 31 1032 1032 HOH HOH A . C 3 HOH 32 1033 1033 HOH HOH A . C 3 HOH 33 1034 1034 HOH HOH A . C 3 HOH 34 1035 1035 HOH HOH A . C 3 HOH 35 1036 1036 HOH HOH A . C 3 HOH 36 1037 1037 HOH HOH A . C 3 HOH 37 1038 1038 HOH HOH A . C 3 HOH 38 1039 1039 HOH HOH A . C 3 HOH 39 1040 1040 HOH HOH A . C 3 HOH 40 1041 1041 HOH HOH A . C 3 HOH 41 1042 1042 HOH HOH A . C 3 HOH 42 1043 1043 HOH HOH A . C 3 HOH 43 1044 1044 HOH HOH A . C 3 HOH 44 1045 1045 HOH HOH A . C 3 HOH 45 1046 1046 HOH HOH A . C 3 HOH 46 1047 1047 HOH HOH A . C 3 HOH 47 1048 1048 HOH HOH A . C 3 HOH 48 1049 1049 HOH HOH A . C 3 HOH 49 1050 1050 HOH HOH A . C 3 HOH 50 1051 1051 HOH HOH A . C 3 HOH 51 1052 1052 HOH HOH A . C 3 HOH 52 1053 1053 HOH HOH A . C 3 HOH 53 1054 1054 HOH HOH A . C 3 HOH 54 1055 1055 HOH HOH A . C 3 HOH 55 1056 1056 HOH HOH A . C 3 HOH 56 1057 1057 HOH HOH A . C 3 HOH 57 1058 1058 HOH HOH A . C 3 HOH 58 1059 1059 HOH HOH A . C 3 HOH 59 1060 1060 HOH HOH A . C 3 HOH 60 1061 1061 HOH HOH A . C 3 HOH 61 1062 1062 HOH HOH A . C 3 HOH 62 1063 1063 HOH HOH A . C 3 HOH 63 1064 1064 HOH HOH A . C 3 HOH 64 1065 1065 HOH HOH A . C 3 HOH 65 1066 1066 HOH HOH A . C 3 HOH 66 1067 1067 HOH HOH A . C 3 HOH 67 1068 1068 HOH HOH A . C 3 HOH 68 1069 1069 HOH HOH A . C 3 HOH 69 1070 1070 HOH HOH A . C 3 HOH 70 1071 1071 HOH HOH A . C 3 HOH 71 1072 1072 HOH HOH A . C 3 HOH 72 1073 1073 HOH HOH A . C 3 HOH 73 1074 1074 HOH HOH A . C 3 HOH 74 1075 1075 HOH HOH A . C 3 HOH 75 1076 1076 HOH HOH A . C 3 HOH 76 1077 1077 HOH HOH A . C 3 HOH 77 1078 1078 HOH HOH A . C 3 HOH 78 1079 1079 HOH HOH A . C 3 HOH 79 1080 1080 HOH HOH A . C 3 HOH 80 1081 1081 HOH HOH A . C 3 HOH 81 1082 1082 HOH HOH A . C 3 HOH 82 1083 1083 HOH HOH A . C 3 HOH 83 1084 1084 HOH HOH A . C 3 HOH 84 1085 1085 HOH HOH A . C 3 HOH 85 1086 1086 HOH HOH A . C 3 HOH 86 1087 1087 HOH HOH A . C 3 HOH 87 1088 1088 HOH HOH A . C 3 HOH 88 1089 1089 HOH HOH A . C 3 HOH 89 1090 1090 HOH HOH A . C 3 HOH 90 1091 1091 HOH HOH A . C 3 HOH 91 1092 1092 HOH HOH A . C 3 HOH 92 1093 1093 HOH HOH A . C 3 HOH 93 1094 1094 HOH HOH A . C 3 HOH 94 1095 1095 HOH HOH A . C 3 HOH 95 1096 1096 HOH HOH A . C 3 HOH 96 1097 1097 HOH HOH A . C 3 HOH 97 1098 1098 HOH HOH A . C 3 HOH 98 1099 1099 HOH HOH A . C 3 HOH 99 1100 1100 HOH HOH A . C 3 HOH 100 1101 1101 HOH HOH A . C 3 HOH 101 1102 1102 HOH HOH A . C 3 HOH 102 1104 1104 HOH HOH A . C 3 HOH 103 1105 1105 HOH HOH A . C 3 HOH 104 1106 1106 HOH HOH A . C 3 HOH 105 1107 1107 HOH HOH A . C 3 HOH 106 1108 1108 HOH HOH A . C 3 HOH 107 1109 1109 HOH HOH A . C 3 HOH 108 1110 1110 HOH HOH A . C 3 HOH 109 1111 1111 HOH HOH A . C 3 HOH 110 1112 1112 HOH HOH A . C 3 HOH 111 1113 1113 HOH HOH A . C 3 HOH 112 1114 1114 HOH HOH A . C 3 HOH 113 1115 1115 HOH HOH A . C 3 HOH 114 1116 1116 HOH HOH A . C 3 HOH 115 1117 1117 HOH HOH A . C 3 HOH 116 1118 1118 HOH HOH A . C 3 HOH 117 1119 1119 HOH HOH A . C 3 HOH 118 1120 1120 HOH HOH A . C 3 HOH 119 1121 1121 HOH HOH A . C 3 HOH 120 1122 1122 HOH HOH A . C 3 HOH 121 1123 1123 HOH HOH A . C 3 HOH 122 1124 1124 HOH HOH A . C 3 HOH 123 1125 1125 HOH HOH A . C 3 HOH 124 1126 1126 HOH HOH A . C 3 HOH 125 1137 1137 HOH HOH A . C 3 HOH 126 1138 1138 HOH HOH A . C 3 HOH 127 1139 1139 HOH HOH A . C 3 HOH 128 1140 1140 HOH HOH A . C 3 HOH 129 1141 1141 HOH HOH A . C 3 HOH 130 1142 1142 HOH HOH A . C 3 HOH 131 1143 1143 HOH HOH A . C 3 HOH 132 1144 1144 HOH HOH A . C 3 HOH 133 1145 1145 HOH HOH A . C 3 HOH 134 1146 1146 HOH HOH A . C 3 HOH 135 1147 1147 HOH HOH A . C 3 HOH 136 1148 1148 HOH HOH A . C 3 HOH 137 1149 1149 HOH HOH A . C 3 HOH 138 1150 1150 HOH HOH A . C 3 HOH 139 1151 1151 HOH HOH A . C 3 HOH 140 1152 1152 HOH HOH A . C 3 HOH 141 1153 1153 HOH HOH A . C 3 HOH 142 1154 1154 HOH HOH A . C 3 HOH 143 1155 1155 HOH HOH A . C 3 HOH 144 1156 1156 HOH HOH A . C 3 HOH 145 1157 1157 HOH HOH A . C 3 HOH 146 1158 1158 HOH HOH A . C 3 HOH 147 1159 1159 HOH HOH A . C 3 HOH 148 1160 1160 HOH HOH A . C 3 HOH 149 1161 1161 HOH HOH A . C 3 HOH 150 1162 1162 HOH HOH A . C 3 HOH 151 1163 1163 HOH HOH A . C 3 HOH 152 1166 1166 HOH HOH A . C 3 HOH 153 1168 1168 HOH HOH A . C 3 HOH 154 1170 1170 HOH HOH A . C 3 HOH 155 1173 1173 HOH HOH A . C 3 HOH 156 1174 1174 HOH HOH A . C 3 HOH 157 1175 1175 HOH HOH A . C 3 HOH 158 1176 1176 HOH HOH A . C 3 HOH 159 1177 1177 HOH HOH A . C 3 HOH 160 1182 1182 HOH HOH A . C 3 HOH 161 1184 1184 HOH HOH A . C 3 HOH 162 1193 1193 HOH HOH A . C 3 HOH 163 1195 1195 HOH HOH A . C 3 HOH 164 1201 1201 HOH HOH A . C 3 HOH 165 1202 1202 HOH HOH A . C 3 HOH 166 1203 1203 HOH HOH A . C 3 HOH 167 1204 1204 HOH HOH A . C 3 HOH 168 1205 1205 HOH HOH A . C 3 HOH 169 1206 1206 HOH HOH A . C 3 HOH 170 1207 1207 HOH HOH A . C 3 HOH 171 1208 1208 HOH HOH A . C 3 HOH 172 1209 1209 HOH HOH A . C 3 HOH 173 1210 1210 HOH HOH A . C 3 HOH 174 1211 1211 HOH HOH A . C 3 HOH 175 1212 1212 HOH HOH A . C 3 HOH 176 1213 1213 HOH HOH A . C 3 HOH 177 1214 1214 HOH HOH A . C 3 HOH 178 1215 1215 HOH HOH A . C 3 HOH 179 1216 1216 HOH HOH A . C 3 HOH 180 1217 1217 HOH HOH A . C 3 HOH 181 1218 1218 HOH HOH A . C 3 HOH 182 1219 1219 HOH HOH A . C 3 HOH 183 1220 1220 HOH HOH A . C 3 HOH 184 1221 1221 HOH HOH A . C 3 HOH 185 1222 1222 HOH HOH A . C 3 HOH 186 1223 1223 HOH HOH A . C 3 HOH 187 1224 1224 HOH HOH A . C 3 HOH 188 1225 1225 HOH HOH A . C 3 HOH 189 1226 1226 HOH HOH A . C 3 HOH 190 1227 1227 HOH HOH A . C 3 HOH 191 1228 1228 HOH HOH A . C 3 HOH 192 1229 1229 HOH HOH A . C 3 HOH 193 1230 1230 HOH HOH A . C 3 HOH 194 1231 1231 HOH HOH A . C 3 HOH 195 1232 1232 HOH HOH A . C 3 HOH 196 1233 1233 HOH HOH A . C 3 HOH 197 1234 1234 HOH HOH A . C 3 HOH 198 1235 1235 HOH HOH A . C 3 HOH 199 1236 1236 HOH HOH A . C 3 HOH 200 1237 1237 HOH HOH A . C 3 HOH 201 1238 1238 HOH HOH A . C 3 HOH 202 1239 1239 HOH HOH A . C 3 HOH 203 1240 1240 HOH HOH A . C 3 HOH 204 1241 1241 HOH HOH A . C 3 HOH 205 1242 1242 HOH HOH A . C 3 HOH 206 1243 1243 HOH HOH A . C 3 HOH 207 1244 1244 HOH HOH A . C 3 HOH 208 1245 1245 HOH HOH A . C 3 HOH 209 1246 1246 HOH HOH A . C 3 HOH 210 1247 1247 HOH HOH A . C 3 HOH 211 1249 1249 HOH HOH A . C 3 HOH 212 1250 1250 HOH HOH A . C 3 HOH 213 1251 1251 HOH HOH A . C 3 HOH 214 1252 1252 HOH HOH A . C 3 HOH 215 1253 1253 HOH HOH A . C 3 HOH 216 1255 1255 HOH HOH A . C 3 HOH 217 1256 1256 HOH HOH A . C 3 HOH 218 1257 1257 HOH HOH A . C 3 HOH 219 1260 1260 HOH HOH A . C 3 HOH 220 1261 1261 HOH HOH A . C 3 HOH 221 1262 1262 HOH HOH A . C 3 HOH 222 1264 1264 HOH HOH A . C 3 HOH 223 1265 1265 HOH HOH A . C 3 HOH 224 1273 1273 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 79 A MSE 79 ? MET SELENOMETHIONINE 3 A MSE 136 A MSE 136 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-11 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 2 ? ? -171.14 100.91 2 1 ALA A 24 ? ? 36.46 61.08 3 1 ALA A 182 ? ? -95.63 -85.46 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' MES 3 water HOH #