HEADER RNA BINDING PROTEIN 24-MAY-04 1WE8 TITLE SOLUTION STRUCTURE OF KH DOMAIN IN PROTEIN BAB28342 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUDOR AND KH DOMAIN CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KH DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 2700091C21; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030331-32; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS STRUCTURAL GENOMICS, KH DOMAIN, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 2 INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,F.HAYASHI, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WE8 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WE8 1 VERSN REVDAT 1 24-NOV-04 1WE8 0 JRNL AUTH F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,F.HAYASHI, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF KH DOMAIN IN PROTEIN BAB28342 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.29 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WE8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000023485. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM U-15,13C; 20MM PHOSPHATE REMARK 210 BUFFER NA; 100MM NACL; 0.02% REMARK 210 NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.863, CYANA 2.0.29 REMARK 210 METHOD USED : TORSION ANGLE DYANMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -56.55 -136.36 REMARK 500 1 SER A 6 163.11 178.99 REMARK 500 1 GLU A 11 -24.74 164.34 REMARK 500 1 ASN A 12 27.72 -174.93 REMARK 500 1 ASP A 51 157.57 -38.72 REMARK 500 1 LYS A 52 -50.83 -136.62 REMARK 500 1 LEU A 58 28.98 -175.84 REMARK 500 1 LEU A 59 -87.81 -36.22 REMARK 500 1 LEU A 60 -48.63 -146.36 REMARK 500 1 VAL A 73 -30.51 -35.76 REMARK 500 1 HIS A 96 91.26 44.37 REMARK 500 1 PRO A 101 88.47 -69.76 REMARK 500 2 SER A 2 -58.47 -155.25 REMARK 500 2 SER A 3 158.15 66.48 REMARK 500 2 THR A 10 -76.45 -112.50 REMARK 500 2 ASN A 12 33.84 162.79 REMARK 500 2 ASP A 51 158.43 -38.49 REMARK 500 2 LYS A 52 -47.29 -135.33 REMARK 500 2 GLU A 53 -32.18 -38.91 REMARK 500 2 GLU A 55 155.87 -46.87 REMARK 500 2 THR A 57 -73.23 -66.49 REMARK 500 2 LEU A 58 30.84 -153.63 REMARK 500 2 LEU A 59 179.79 -49.44 REMARK 500 2 GLN A 70 -31.51 -37.09 REMARK 500 2 VAL A 73 -27.26 -39.86 REMARK 500 2 ALA A 98 -49.44 -149.11 REMARK 500 2 SER A 103 94.48 65.02 REMARK 500 3 LEU A 9 -173.95 176.89 REMARK 500 3 GLU A 11 -29.39 178.73 REMARK 500 3 ASN A 12 20.13 -160.14 REMARK 500 3 ASP A 51 -152.64 35.02 REMARK 500 3 LYS A 52 -63.59 -148.83 REMARK 500 3 THR A 57 -72.78 -79.19 REMARK 500 3 LEU A 58 38.97 -175.70 REMARK 500 3 LEU A 59 -174.89 -52.28 REMARK 500 3 VAL A 73 -28.40 -38.74 REMARK 500 3 ALA A 98 33.97 -166.28 REMARK 500 3 SER A 102 -52.28 -152.26 REMARK 500 4 SER A 5 82.97 70.23 REMARK 500 4 ASN A 12 30.29 176.63 REMARK 500 4 THR A 13 141.25 -38.85 REMARK 500 4 ARG A 32 106.49 -53.88 REMARK 500 4 GLU A 35 -28.91 -39.46 REMARK 500 4 ASP A 51 154.15 -36.09 REMARK 500 4 LYS A 52 -46.70 -132.47 REMARK 500 4 THR A 57 -80.33 -106.83 REMARK 500 4 LEU A 59 -174.60 -51.44 REMARK 500 4 GLN A 70 -34.58 -38.69 REMARK 500 4 ALA A 98 59.83 -156.47 REMARK 500 4 SER A 99 157.07 -45.41 REMARK 500 REMARK 500 THIS ENTRY HAS 286 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMK001004200.1 RELATED DB: TARGETDB DBREF 1WE8 A 8 98 UNP Q80VL1 TDRKH_MOUSE 118 208 SEQADV 1WE8 GLY A 1 UNP Q80VL1 CLONING ARTIFACT SEQADV 1WE8 SER A 2 UNP Q80VL1 CLONING ARTIFACT SEQADV 1WE8 SER A 3 UNP Q80VL1 CLONING ARTIFACT SEQADV 1WE8 GLY A 4 UNP Q80VL1 CLONING ARTIFACT SEQADV 1WE8 SER A 5 UNP Q80VL1 CLONING ARTIFACT SEQADV 1WE8 SER A 6 UNP Q80VL1 CLONING ARTIFACT SEQADV 1WE8 GLY A 7 UNP Q80VL1 CLONING ARTIFACT SEQADV 1WE8 SER A 99 UNP Q80VL1 CLONING ARTIFACT SEQADV 1WE8 GLY A 100 UNP Q80VL1 CLONING ARTIFACT SEQADV 1WE8 PRO A 101 UNP Q80VL1 CLONING ARTIFACT SEQADV 1WE8 SER A 102 UNP Q80VL1 CLONING ARTIFACT SEQADV 1WE8 SER A 103 UNP Q80VL1 CLONING ARTIFACT SEQADV 1WE8 GLY A 104 UNP Q80VL1 CLONING ARTIFACT SEQRES 1 A 104 GLY SER SER GLY SER SER GLY ILE LEU THR GLU ASN THR SEQRES 2 A 104 PRO VAL PHE GLU GLN LEU SER VAL PRO GLN ARG SER VAL SEQRES 3 A 104 GLY ARG ILE ILE GLY ARG GLY GLY GLU THR ILE ARG SER SEQRES 4 A 104 ILE CYS LYS ALA SER GLY ALA LYS ILE THR CYS ASP LYS SEQRES 5 A 104 GLU SER GLU GLY THR LEU LEU LEU SER ARG LEU ILE LYS SEQRES 6 A 104 ILE SER GLY THR GLN LYS GLU VAL ALA ALA ALA LYS HIS SEQRES 7 A 104 LEU ILE LEU GLU LYS VAL SER GLU ASP GLU GLU LEU ARG SEQRES 8 A 104 LYS ARG ILE ALA HIS SER ALA SER GLY PRO SER SER GLY HELIX 1 1 VAL A 26 ILE A 29 1 4 HELIX 2 2 GLU A 35 SER A 44 1 10 HELIX 3 3 GLN A 70 ALA A 95 1 26 SHEET 1 A 3 PRO A 14 PRO A 22 0 SHEET 2 A 3 SER A 61 THR A 69 -1 O ILE A 66 N GLU A 17 SHEET 3 A 3 LYS A 47 CYS A 50 -1 N THR A 49 O LYS A 65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1