HEADER RNA BINDING PROTEIN 25-MAY-04 1WF0 TITLE SOLUTION STRUCTURE OF RRM DOMAIN IN TAR DNA-BINDING PROTEIN-43 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAR DNA-BINDING PROTEIN-43; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM DOMAIN; COMPND 5 SYNONYM: TDP-43; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HEP00195; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS STRUCTURAL GENOMICS, RRM DOMAIN, TAR DNA-BINDING PROTEIN-43, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WF0 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WF0 1 VERSN REVDAT 1 25-NOV-04 1WF0 0 JRNL AUTH F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RRM DOMAIN IN TAR DNA-BINDING JRNL TITL 2 PROTEIN-43 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.8 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WF0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000023506. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM U-15, 13C; 20MM D-TRIS REMARK 210 -HCL(PH 7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.863, CYANA 1.0.8 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 88.81 -150.85 REMARK 500 1 VAL A 32 93.23 -65.83 REMARK 500 1 CYS A 59 107.70 -57.65 REMARK 500 1 HIS A 79 148.28 -176.17 REMARK 500 2 MET A 17 165.61 -48.14 REMARK 500 2 ALA A 43 37.61 35.82 REMARK 500 2 SER A 81 143.97 72.08 REMARK 500 2 SER A 86 -60.50 -123.82 REMARK 500 3 MET A 17 170.61 -54.08 REMARK 500 3 VAL A 32 96.49 -63.40 REMARK 500 3 ALA A 43 37.16 36.23 REMARK 500 3 SER A 81 95.05 76.10 REMARK 500 4 SER A 2 79.63 -118.50 REMARK 500 4 SER A 6 42.11 -95.71 REMARK 500 4 SER A 83 135.78 68.46 REMARK 500 5 SER A 5 -79.81 -36.11 REMARK 500 5 SER A 6 81.28 -165.35 REMARK 500 5 CYS A 13 -168.50 -112.43 REMARK 500 5 VAL A 32 95.82 -66.01 REMARK 500 5 ALA A 43 29.13 42.92 REMARK 500 5 HIS A 79 35.06 -161.85 REMARK 500 5 ASN A 80 95.30 -52.70 REMARK 500 5 PRO A 85 0.37 -69.72 REMARK 500 5 SER A 86 147.81 66.62 REMARK 500 5 SER A 87 88.29 60.78 REMARK 500 6 SER A 3 116.99 -179.30 REMARK 500 6 SER A 6 33.89 -93.78 REMARK 500 6 ASN A 82 -60.93 174.46 REMARK 500 7 SER A 3 89.22 -167.46 REMARK 500 7 SER A 5 93.32 -171.05 REMARK 500 7 SER A 6 58.64 -104.58 REMARK 500 7 SER A 81 92.21 -172.45 REMARK 500 7 ASN A 82 83.45 56.43 REMARK 500 8 SER A 6 42.29 -96.48 REMARK 500 8 MET A 17 152.38 -39.05 REMARK 500 8 PRO A 85 0.62 -69.71 REMARK 500 8 SER A 87 -68.68 -143.56 REMARK 500 9 SER A 2 95.28 62.00 REMARK 500 9 MET A 17 107.41 -56.99 REMARK 500 9 VAL A 32 96.52 -64.07 REMARK 500 9 ALA A 43 35.49 37.13 REMARK 500 9 SER A 87 -46.34 178.33 REMARK 500 10 SER A 2 65.16 -106.81 REMARK 500 10 SER A 5 83.86 62.84 REMARK 500 10 MET A 17 150.41 -42.06 REMARK 500 10 VAL A 32 99.58 -62.50 REMARK 500 10 LYS A 66 7.46 81.67 REMARK 500 10 ASN A 80 44.42 -99.76 REMARK 500 11 SER A 6 45.28 -109.83 REMARK 500 11 ARG A 12 46.38 37.94 REMARK 500 REMARK 500 THIS ENTRY HAS 120 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 AUTHOR DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 AUTHOR DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001001277.1 RELATED DB: TARGETDB DBREF 1WF0 A 8 82 UNP Q13148 TADBP_HUMAN 193 267 SEQADV 1WF0 GLY A 1 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 SER A 2 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 SER A 3 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 GLY A 4 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 SER A 5 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 SER A 6 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 GLY A 7 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 GLY A 15 UNP Q13148 GLU 200 SEE REMARK 999 SEQADV 1WF0 SER A 83 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 GLY A 84 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 PRO A 85 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 SER A 86 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 SER A 87 UNP Q13148 CLONING ARTIFACT SEQADV 1WF0 GLY A 88 UNP Q13148 CLONING ARTIFACT SEQRES 1 A 88 GLY SER SER GLY SER SER GLY VAL PHE VAL GLY ARG CYS SEQRES 2 A 88 THR GLY ASP MET THR GLU ASP GLU LEU ARG GLU PHE PHE SEQRES 3 A 88 SER GLN TYR GLY ASP VAL MET ASP VAL PHE ILE PRO LYS SEQRES 4 A 88 PRO PHE ARG ALA PHE ALA PHE VAL THR PHE ALA ASP ASP SEQRES 5 A 88 GLN ILE ALA GLN SER LEU CYS GLY GLU ASP LEU ILE ILE SEQRES 6 A 88 LYS GLY ILE SER VAL HIS ILE SER ASN ALA GLU PRO LYS SEQRES 7 A 88 HIS ASN SER ASN SER GLY PRO SER SER GLY HELIX 1 1 GLU A 19 PHE A 26 1 8 HELIX 2 2 SER A 27 TYR A 29 1 3 HELIX 3 3 ASP A 52 LEU A 58 1 7 SHEET 1 A 5 GLY A 7 GLY A 11 0 SHEET 2 A 5 ASP A 34 PHE A 36 -1 O THR A 48 N ASP A 34 SHEET 3 A 5 ALA A 45 THR A 48 -1 N VAL A 8 O VAL A 47 SHEET 4 A 5 ASP A 62 ILE A 65 -1 O SER A 73 N PHE A 9 SHEET 5 A 5 ILE A 68 SER A 73 -1 N LEU A 63 O VAL A 70 CISPEP 1 LYS A 39 PRO A 40 1 -0.17 CISPEP 2 LYS A 39 PRO A 40 2 -0.08 CISPEP 3 LYS A 39 PRO A 40 3 -0.20 CISPEP 4 LYS A 39 PRO A 40 4 -0.19 CISPEP 5 LYS A 39 PRO A 40 5 -0.09 CISPEP 6 LYS A 39 PRO A 40 6 -0.03 CISPEP 7 LYS A 39 PRO A 40 7 0.06 CISPEP 8 LYS A 39 PRO A 40 8 -0.11 CISPEP 9 LYS A 39 PRO A 40 9 0.03 CISPEP 10 LYS A 39 PRO A 40 10 -0.13 CISPEP 11 LYS A 39 PRO A 40 11 -0.14 CISPEP 12 LYS A 39 PRO A 40 12 -0.05 CISPEP 13 LYS A 39 PRO A 40 13 -0.09 CISPEP 14 LYS A 39 PRO A 40 14 -0.11 CISPEP 15 LYS A 39 PRO A 40 15 -0.27 CISPEP 16 LYS A 39 PRO A 40 16 0.03 CISPEP 17 LYS A 39 PRO A 40 17 -0.10 CISPEP 18 LYS A 39 PRO A 40 18 -0.03 CISPEP 19 LYS A 39 PRO A 40 19 -0.12 CISPEP 20 LYS A 39 PRO A 40 20 -0.07 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1