HEADER RNA BINDING PROTEIN 25-MAY-04 1WF1 TITLE SOLUTION STRUCTURE OF RRM DOMAIN IN RNA-BINDING PROTEIN NP_057951 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN RALY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM DOMAIN; COMPND 5 SYNONYM: RNA BINDING PROTEIN NP_057951, HNRNP ASSOCIATED WITH LETHAL COMPND 6 YELLOW HOMOLOG, AUTOANTIGEN P542; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRC04171; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040223-76; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS STRUCTURAL GENOMICS, RRM DOMAIN, RNA BINDING PROTEIN, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WF1 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WF1 1 VERSN REVDAT 1 25-NOV-04 1WF1 0 JRNL AUTH F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RRM DOMAIN IN RNA-BINDING PROTEIN JRNL TITL 2 NP_057951 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.8 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WF1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000023507. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM U-15, 13C; 20MM D-TRIS REMARK 210 -HCL(PH 7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.863, CYANA 1.0.8 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 59 H PHE A 66 1.52 REMARK 500 O GLU A 46 H SER A 50 1.57 REMARK 500 O ILE A 32 H ALA A 65 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 8 -61.55 -168.41 REMARK 500 1 LEU A 12 -62.84 -98.05 REMARK 500 1 GLN A 13 168.18 65.25 REMARK 500 1 ALA A 14 83.60 58.61 REMARK 500 1 SER A 15 84.02 -157.77 REMARK 500 1 ASN A 16 161.09 177.33 REMARK 500 1 VAL A 17 138.26 62.39 REMARK 500 1 LYS A 20 63.91 -100.45 REMARK 500 1 THR A 37 24.56 45.01 REMARK 500 1 SER A 50 -30.10 -39.55 REMARK 500 1 ASN A 83 117.71 -38.44 REMARK 500 1 ALA A 88 -9.33 85.61 REMARK 500 1 PRO A 100 -162.29 -75.02 REMARK 500 1 SER A 109 -56.62 -163.86 REMARK 500 2 SER A 5 166.75 56.38 REMARK 500 2 SER A 6 89.53 -172.43 REMARK 500 2 MET A 8 -55.48 -162.36 REMARK 500 2 LEU A 12 147.41 64.92 REMARK 500 2 VAL A 17 -47.83 -171.70 REMARK 500 2 ASN A 19 93.38 67.69 REMARK 500 2 ASN A 21 -176.34 64.02 REMARK 500 2 THR A 37 24.70 44.45 REMARK 500 2 ARG A 54 128.57 -38.81 REMARK 500 2 ASN A 83 115.59 -38.05 REMARK 500 2 ALA A 88 -11.57 86.97 REMARK 500 2 PRO A 100 -162.28 -74.95 REMARK 500 2 LYS A 101 103.92 63.17 REMARK 500 3 SER A 6 152.96 60.73 REMARK 500 3 MET A 8 146.29 -179.87 REMARK 500 3 LYS A 11 137.39 -170.08 REMARK 500 3 LEU A 12 73.15 -116.99 REMARK 500 3 ASN A 16 154.05 61.72 REMARK 500 3 THR A 18 -50.16 -125.37 REMARK 500 3 ASN A 19 110.74 59.86 REMARK 500 3 THR A 37 25.22 42.74 REMARK 500 3 ASN A 83 108.91 -38.81 REMARK 500 3 ALA A 88 -2.54 85.54 REMARK 500 3 PRO A 100 -162.13 -75.03 REMARK 500 3 ASP A 103 -55.36 -175.58 REMARK 500 4 LYS A 11 60.55 60.81 REMARK 500 4 LEU A 12 112.15 -166.28 REMARK 500 4 THR A 18 -46.61 -160.34 REMARK 500 4 ASN A 21 -176.48 53.72 REMARK 500 4 ASN A 34 29.66 40.18 REMARK 500 4 THR A 37 25.70 41.60 REMARK 500 4 ASN A 83 103.69 -38.49 REMARK 500 4 ALA A 88 3.23 85.71 REMARK 500 4 PRO A 100 -162.23 -75.05 REMARK 500 5 SER A 3 92.02 -176.67 REMARK 500 5 SER A 9 -61.20 -94.07 REMARK 500 REMARK 500 THIS ENTRY HAS 262 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001001895.1 RELATED DB: TARGETDB DBREF 1WF1 A 8 104 UNP Q9UKM9 RALY_HUMAN 1 97 SEQADV 1WF1 GLY A 1 UNP Q9UKM9 CLONING ARTIFACT SEQADV 1WF1 SER A 2 UNP Q9UKM9 CLONING ARTIFACT SEQADV 1WF1 SER A 3 UNP Q9UKM9 CLONING ARTIFACT SEQADV 1WF1 GLY A 4 UNP Q9UKM9 CLONING ARTIFACT SEQADV 1WF1 SER A 5 UNP Q9UKM9 CLONING ARTIFACT SEQADV 1WF1 SER A 6 UNP Q9UKM9 CLONING ARTIFACT SEQADV 1WF1 GLY A 7 UNP Q9UKM9 CLONING ARTIFACT SEQADV 1WF1 SER A 105 UNP Q9UKM9 CLONING ARTIFACT SEQADV 1WF1 GLY A 106 UNP Q9UKM9 CLONING ARTIFACT SEQADV 1WF1 PRO A 107 UNP Q9UKM9 CLONING ARTIFACT SEQADV 1WF1 SER A 108 UNP Q9UKM9 CLONING ARTIFACT SEQADV 1WF1 SER A 109 UNP Q9UKM9 CLONING ARTIFACT SEQADV 1WF1 GLY A 110 UNP Q9UKM9 CLONING ARTIFACT SEQRES 1 A 110 GLY SER SER GLY SER SER GLY MET SER LEU LYS LEU GLN SEQRES 2 A 110 ALA SER ASN VAL THR ASN LYS ASN ASP PRO LYS SER ILE SEQRES 3 A 110 ASN SER ARG VAL PHE ILE GLY ASN LEU ASN THR ALA LEU SEQRES 4 A 110 VAL LYS LYS SER ASP VAL GLU THR ILE PHE SER LYS TYR SEQRES 5 A 110 GLY ARG VAL ALA GLY CYS SER VAL HIS LYS GLY TYR ALA SEQRES 6 A 110 PHE VAL GLN TYR SER ASN GLU ARG HIS ALA ARG ALA ALA SEQRES 7 A 110 VAL LEU GLY GLU ASN GLY ARG VAL LEU ALA GLY GLN THR SEQRES 8 A 110 LEU ASP ILE ASN MET ALA GLY GLU PRO LYS PRO ASP ARG SEQRES 9 A 110 SER GLY PRO SER SER GLY HELIX 1 1 LYS A 42 PHE A 49 1 8 HELIX 2 2 SER A 50 TYR A 52 5 3 HELIX 3 3 GLU A 72 GLU A 82 1 11 SHEET 1 A 4 GLY A 57 HIS A 61 0 SHEET 2 A 4 TYR A 64 TYR A 69 -1 SHEET 3 A 4 ARG A 29 GLY A 33 -1 SHEET 4 A 4 ILE A 94 MET A 96 -1 SHEET 1 B 2 VAL A 86 LEU A 87 0 SHEET 2 B 2 GLN A 90 THR A 91 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1