HEADER RNA BINDING PROTEIN 26-MAY-04 1WFQ TITLE SOLUTION STRUCTURE OF THE FIRST COLD-SHOCK DOMAIN OF THE HUMAN TITLE 2 KIAA0885 PROTEIN (UNR PROTEIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIRST COLD-SHOCK DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA HK07709; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040114-45; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BETA-BARREL, TRANSLATIONAL REGULATION, RNA CHAPERONE, RNA/DNA KEYWDS 2 BINDING, QB FOLD, GREEK-KEY TOPOLOGY, UNR PROTEIN, STRUCTURAL KEYWDS 3 GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.K.GORONCY,T.KIGAWA,S.KOSHIBA,T.TOMIZAWA,N.KOBAYASHI,N.TOCHIO, AUTHOR 2 M.INOUE,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI) REVDAT 4 01-MAY-24 1WFQ 1 REMARK SEQADV REVDAT 3 01-SEP-10 1WFQ 1 JRNL REVDAT 2 24-FEB-09 1WFQ 1 VERSN REVDAT 1 26-NOV-04 1WFQ 0 JRNL AUTH A.K.GORONCY,S.KOSHIBA,N.TOCHIO,T.TOMIZAWA,M.INOUE, JRNL AUTH 2 S.WATANABE,T.HARADA,A.TANAKA,O.OHARA,T.KIGAWA,S.YOKOYAMA JRNL TITL THE NMR SOLUTION STRUCTURES OF THE FIVE CONSTITUENT JRNL TITL 2 COLD-SHOCK DOMAINS (CSD) OF THE HUMAN UNR (UPSTREAM OF JRNL TITL 3 N-RAS) PROTEIN. JRNL REF J.STRUCT.FUNCT.GENOM. V. 11 181 2010 JRNL REFN ISSN 1345-711X JRNL PMID 20213426 JRNL DOI 10.1007/S10969-010-9081-Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WFQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023529. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.09MM COLD-SHOCK DOMAIN U-15N, REMARK 210 13C; 20MM PHOSPHATE BUFFER NA; REMARK 210 100MM NACL; 0.02% NAN3; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW REMARK 210 5.0.14, KUJIRA 0.899 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 9 156.82 -38.34 REMARK 500 1 LEU A 53 -36.33 -36.87 REMARK 500 1 ASP A 69 174.70 -58.06 REMARK 500 1 PRO A 86 3.59 -69.75 REMARK 500 1 SER A 88 175.18 -56.77 REMARK 500 2 SER A 3 100.88 -58.93 REMARK 500 2 SER A 14 172.68 -50.37 REMARK 500 2 ALA A 15 -179.11 -66.27 REMARK 500 2 LEU A 17 144.91 -171.39 REMARK 500 2 ILE A 23 92.68 -68.80 REMARK 500 2 PRO A 75 95.46 -69.71 REMARK 500 3 LEU A 17 110.60 -173.10 REMARK 500 3 LEU A 53 -35.40 -35.06 REMARK 500 3 PRO A 75 97.48 -69.72 REMARK 500 3 VAL A 81 117.79 -160.99 REMARK 500 3 SER A 84 171.44 -57.28 REMARK 500 4 SER A 5 41.49 -83.26 REMARK 500 4 ILE A 23 91.63 -64.39 REMARK 500 4 PRO A 75 99.87 -69.78 REMARK 500 4 VAL A 81 119.76 -163.40 REMARK 500 5 TYR A 9 149.17 -170.05 REMARK 500 6 THR A 13 139.81 -35.44 REMARK 500 6 ALA A 15 167.14 -44.54 REMARK 500 6 ILE A 23 92.74 -56.12 REMARK 500 6 SER A 88 87.21 -58.92 REMARK 500 7 SER A 2 29.02 47.88 REMARK 500 7 PRO A 10 -176.34 -69.77 REMARK 500 7 ILE A 23 94.32 -61.20 REMARK 500 7 ASP A 69 171.66 -58.07 REMARK 500 8 SER A 2 89.20 -69.78 REMARK 500 8 SER A 14 41.96 -89.63 REMARK 500 8 ASP A 69 170.53 -48.54 REMARK 500 9 SER A 3 109.05 -44.37 REMARK 500 9 ASN A 11 131.36 -34.45 REMARK 500 9 ILE A 23 95.06 -62.69 REMARK 500 9 CYS A 35 132.64 -37.82 REMARK 500 9 ASP A 69 175.50 -48.10 REMARK 500 10 ASN A 11 98.38 -57.69 REMARK 500 10 SER A 14 104.94 -37.20 REMARK 500 10 LEU A 53 -39.17 -39.19 REMARK 500 10 ASP A 69 178.79 -55.46 REMARK 500 11 SER A 5 41.57 -98.70 REMARK 500 11 ARG A 71 -60.68 -100.13 REMARK 500 11 PRO A 75 98.19 -69.83 REMARK 500 11 SER A 88 -63.02 -95.39 REMARK 500 12 SER A 5 82.51 -63.99 REMARK 500 12 ILE A 23 95.75 -62.17 REMARK 500 12 VAL A 81 118.81 -164.65 REMARK 500 12 SER A 87 114.58 -36.23 REMARK 500 13 SER A 5 42.01 -93.94 REMARK 500 REMARK 500 THIS ENTRY HAS 78 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000864.2 RELATED DB: TARGETDB DBREF 1WFQ A 8 83 UNP O75534 CSDE1_HUMAN 15 90 SEQADV 1WFQ GLY A 1 UNP O75534 CLONING ARTIFACT SEQADV 1WFQ SER A 2 UNP O75534 CLONING ARTIFACT SEQADV 1WFQ SER A 3 UNP O75534 CLONING ARTIFACT SEQADV 1WFQ GLY A 4 UNP O75534 CLONING ARTIFACT SEQADV 1WFQ SER A 5 UNP O75534 CLONING ARTIFACT SEQADV 1WFQ SER A 6 UNP O75534 CLONING ARTIFACT SEQADV 1WFQ GLY A 7 UNP O75534 CLONING ARTIFACT SEQADV 1WFQ SER A 84 UNP O75534 CLONING ARTIFACT SEQADV 1WFQ GLY A 85 UNP O75534 CLONING ARTIFACT SEQADV 1WFQ PRO A 86 UNP O75534 CLONING ARTIFACT SEQADV 1WFQ SER A 87 UNP O75534 CLONING ARTIFACT SEQADV 1WFQ SER A 88 UNP O75534 CLONING ARTIFACT SEQADV 1WFQ GLY A 89 UNP O75534 CLONING ARTIFACT SEQRES 1 A 89 GLY SER SER GLY SER SER GLY GLY TYR PRO ASN GLY THR SEQRES 2 A 89 SER ALA ALA LEU ARG GLU THR GLY VAL ILE GLU LYS LEU SEQRES 3 A 89 LEU THR SER TYR GLY PHE ILE GLN CYS SER GLU ARG GLN SEQRES 4 A 89 ALA ARG LEU PHE PHE HIS CYS SER GLN TYR ASN GLY ASN SEQRES 5 A 89 LEU GLN ASP LEU LYS VAL GLY ASP ASP VAL GLU PHE GLU SEQRES 6 A 89 VAL SER SER ASP ARG ARG THR GLY LYS PRO ILE ALA VAL SEQRES 7 A 89 LYS LEU VAL LYS ILE SER GLY PRO SER SER GLY SHEET 1 A 6 ARG A 18 LEU A 26 0 SHEET 2 A 6 TYR A 30 CYS A 35 -1 O GLN A 34 N VAL A 22 SHEET 3 A 6 ALA A 40 HIS A 45 -1 O LEU A 42 N ILE A 33 SHEET 4 A 6 PRO A 75 LYS A 82 1 O ALA A 77 N PHE A 43 SHEET 5 A 6 VAL A 62 SER A 68 -1 N GLU A 63 O VAL A 81 SHEET 6 A 6 ARG A 18 LEU A 26 -1 N GLU A 19 O PHE A 64 CISPEP 1 TYR A 9 PRO A 10 1 -0.07 CISPEP 2 TYR A 9 PRO A 10 2 -0.11 CISPEP 3 TYR A 9 PRO A 10 3 -0.04 CISPEP 4 TYR A 9 PRO A 10 4 -0.15 CISPEP 5 TYR A 9 PRO A 10 5 0.03 CISPEP 6 TYR A 9 PRO A 10 6 -0.05 CISPEP 7 TYR A 9 PRO A 10 7 -0.06 CISPEP 8 TYR A 9 PRO A 10 8 -0.12 CISPEP 9 TYR A 9 PRO A 10 9 -0.09 CISPEP 10 TYR A 9 PRO A 10 10 -0.03 CISPEP 11 TYR A 9 PRO A 10 11 0.02 CISPEP 12 TYR A 9 PRO A 10 12 -0.07 CISPEP 13 TYR A 9 PRO A 10 13 -0.07 CISPEP 14 TYR A 9 PRO A 10 14 -0.01 CISPEP 15 TYR A 9 PRO A 10 15 -0.07 CISPEP 16 TYR A 9 PRO A 10 16 -0.07 CISPEP 17 TYR A 9 PRO A 10 17 -0.08 CISPEP 18 TYR A 9 PRO A 10 18 -0.17 CISPEP 19 TYR A 9 PRO A 10 19 -0.07 CISPEP 20 TYR A 9 PRO A 10 20 -0.10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1