HEADER TRANSFERASE 27-MAY-04 1WFX TITLE CRYSTAL STRUCTURE OF APE0204 FROM AEROPYRUM PERNIX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE RNA 2'-PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-186; COMPND 5 SYNONYM: RNA 2'-PHOSPHOTRANSFERASE, APE0204 PROTEIN; COMPND 6 EC: 2.7.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX; SOURCE 3 ORGANISM_TAXID: 56636; SOURCE 4 GENE: APE0204; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS RNA 2'-PHOSPHOTRANSFERASE, TRNA SPLICING, NAD, STRUCTURAL GENOMICS, KEYWDS 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KATO-MURAYAMA,Y.BESSHO,M.SHIROUZU,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 13-NOV-24 1WFX 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1WFX 1 VERSN REVDAT 3 24-FEB-09 1WFX 1 VERSN REVDAT 2 19-APR-05 1WFX 1 AUTHOR JRNL KEYWDS REMARK REVDAT 1 27-NOV-04 1WFX 0 JRNL AUTH M.KATO-MURAYAMA,Y.BESSHO,M.SHIROUZU,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF THE RNA 2'-PHOSPHOTRANSFERASE FROM JRNL TITL 2 AEROPYRUM PERNIX K1 JRNL REF J.MOL.BIOL. V. 348 295 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15811369 JRNL DOI 10.1016/J.JMB.2005.02.049 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1574085.550 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 5213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 536 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 775 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE : 0.4180 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 75 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.048 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1442 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 114.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 3.89000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.61 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.930 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 42.03 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WFX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789, 0.9791, 0.970 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5217 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 44.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 51.33350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.63741 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 33.82967 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 51.33350 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.63741 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 33.82967 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 51.33350 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.63741 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 33.82967 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 51.33350 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.63741 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.82967 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 51.33350 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.63741 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 33.82967 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 51.33350 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.63741 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.82967 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.27482 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 67.65933 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 59.27482 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 67.65933 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 59.27482 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 67.65933 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 59.27482 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.65933 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 59.27482 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 67.65933 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 59.27482 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 67.65933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -186.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 51.33350 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 88.91223 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -51.33350 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 88.91223 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 316 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 183 REMARK 465 ARG A 184 REMARK 465 SER A 185 REMARK 465 LEU A 186 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 15 -33.78 -133.09 REMARK 500 ARG A 67 142.47 -174.07 REMARK 500 ASN A 68 74.06 7.08 REMARK 500 THR A 98 -166.26 -175.87 REMARK 500 LEU A 138 60.04 77.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 58 NE2 REMARK 620 2 HIS A 58 NE2 104.3 REMARK 620 3 HIS A 58 NE2 104.3 103.4 REMARK 620 4 HOH A 316 O 114.8 113.8 114.9 REMARK 620 5 HOH A 316 O 116.1 113.6 113.9 1.3 REMARK 620 6 HOH A 316 O 115.0 114.8 113.7 1.3 1.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APE001000204 RELATED DB: TARGETDB DBREF 1WFX A 1 186 UNP Q9YFP5 KPTA_AERPE 35 220 SEQADV 1WFX MSE A 1 UNP Q9YFP5 MET 35 MODIFIED RESIDUE SEQADV 1WFX MSE A 107 UNP Q9YFP5 MET 141 MODIFIED RESIDUE SEQADV 1WFX MSE A 112 UNP Q9YFP5 MET 146 MODIFIED RESIDUE SEQADV 1WFX MSE A 159 UNP Q9YFP5 MET 193 MODIFIED RESIDUE SEQRES 1 A 186 MSE ARG VAL ARG LEU SER LYS THR LEU ALA GLY ILE LEU SEQRES 2 A 186 ARG HIS HIS PRO GLY ARG TYR GLY VAL ARG LEU THR ARG SEQRES 3 A 186 GLU GLY TRP ALA ARG VAL SER GLU VAL VAL GLU GLY LEU SEQRES 4 A 186 ARG LYS ALA GLY TRP SER TRP VAL GLU GLU TRP HIS ILE SEQRES 5 A 186 VAL GLY VAL ALA LEU HIS ASP PRO LYS GLY ARG TYR GLU SEQRES 6 A 186 LEU ARG ASN GLY GLU ILE ARG ALA ARG TYR GLY HIS SER SEQRES 7 A 186 ILE PRO VAL ASN VAL GLU PRO LEU PRO GLY GLU PRO PRO SEQRES 8 A 186 PRO ILE LEU TYR HIS GLY THR THR GLU GLU ALA LEU PRO SEQRES 9 A 186 LEU ILE MSE GLU ARG GLY ILE MSE ARG GLY ARG ARG LEU SEQRES 10 A 186 LYS VAL HIS LEU THR SER SER LEU GLU ASP ALA VAL SER SEQRES 11 A 186 THR GLY ARG ARG HIS GLY ASN LEU VAL ALA VAL LEU LEU SEQRES 12 A 186 VAL ASP VAL GLU CYS LEU ARG ARG ARG GLY LEU LYS VAL SEQRES 13 A 186 GLU ARG MSE SER LYS THR VAL TYR THR VAL ASP TRP VAL SEQRES 14 A 186 PRO PRO GLU CYS ILE ALA GLU VAL ARG ARG GLU SER LEU SEQRES 15 A 186 GLY ARG SER LEU MODRES 1WFX MSE A 107 MET SELENOMETHIONINE MODRES 1WFX MSE A 112 MET SELENOMETHIONINE MODRES 1WFX MSE A 159 MET SELENOMETHIONINE HET MSE A 107 8 HET MSE A 112 8 HET MSE A 159 8 HET ZN A 201 1 HET CL A 202 1 HET CL A 203 1 HET CL A 204 1 HET CL A 205 1 HET CL A 206 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 CL 5(CL 1-) FORMUL 8 HOH *16(H2 O) HELIX 1 1 ARG A 4 HIS A 15 1 12 HELIX 2 2 PRO A 17 GLY A 21 5 5 HELIX 3 3 VAL A 32 ALA A 42 1 11 HELIX 4 4 GLU A 48 ASP A 59 1 12 HELIX 5 5 THR A 99 GLU A 101 5 3 HELIX 6 6 ALA A 102 GLY A 110 1 9 HELIX 7 7 SER A 124 ARG A 133 1 10 HELIX 8 8 VAL A 146 ARG A 152 1 7 HELIX 9 9 PRO A 170 GLU A 172 5 3 SHEET 1 A 3 ALA A 30 ARG A 31 0 SHEET 2 A 3 GLU A 70 ALA A 73 -1 O ILE A 71 N ALA A 30 SHEET 3 A 3 TYR A 64 ARG A 67 -1 N ARG A 67 O GLU A 70 SHEET 1 B 3 ILE A 93 HIS A 96 0 SHEET 2 B 3 ALA A 140 ASP A 145 -1 O VAL A 144 N LEU A 94 SHEET 3 B 3 ILE A 174 ARG A 179 -1 O GLU A 176 N LEU A 143 SHEET 1 C 3 VAL A 119 THR A 122 0 SHEET 2 C 3 VAL A 163 VAL A 166 -1 O TYR A 164 N LEU A 121 SHEET 3 C 3 GLU A 157 ARG A 158 -1 N GLU A 157 O THR A 165 SSBOND 1 CYS A 148 CYS A 173 1555 1555 2.04 LINK C ILE A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N GLU A 108 1555 1555 1.33 LINK C ILE A 111 N MSE A 112 1555 1555 1.33 LINK C MSE A 112 N ARG A 113 1555 1555 1.33 LINK C ARG A 158 N MSE A 159 1555 1555 1.33 LINK C MSE A 159 N SER A 160 1555 1555 1.33 LINK NE2 HIS A 58 ZN ZN A 201 1555 1555 2.19 LINK NE2 HIS A 58 ZN ZN A 201 2665 1555 2.22 LINK NE2 HIS A 58 ZN ZN A 201 3565 1555 2.22 LINK ZN ZN A 201 O HOH A 316 1555 1555 2.05 LINK ZN ZN A 201 O HOH A 316 1555 2665 2.06 LINK ZN ZN A 201 O HOH A 316 1555 3565 2.05 SITE 1 AC1 2 HIS A 58 HOH A 316 SITE 1 AC2 3 ARG A 14 LYS A 61 ARG A 63 SITE 1 AC3 1 ARG A 150 SITE 1 AC4 2 HIS A 15 ARG A 115 SITE 1 AC5 1 ARG A 158 CRYST1 102.667 102.667 101.489 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009740 0.005624 0.000000 0.00000 SCALE2 0.000000 0.011247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009853 0.00000