HEADER SIGNALING PROTEIN 27-MAY-04 1WG7 TITLE SOLUTION STRUCTURE OF PLECKSTRIN HOMOLOGY DOMAIN FROM HUMAN KIAA1058 TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEDICATOR OF CYTOKINESIS PROTEIN 9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PH DOMAIN; COMPND 5 SYNONYM: KIAA1058 PROTEIN, CDC42 GUANINE NUCLEOTIDE EXCHANGE FACTOR COMPND 6 ZIZIMIN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA HH12146S1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030428-80; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS PLECKSTRIN HOMOLOGY DOMAIN, ZIZIMIN1, STRUCTURAL GENOMICS, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.SUETAKE,K.INOUE,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WG7 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WG7 1 VERSN REVDAT 1 27-NOV-04 1WG7 0 JRNL AUTH T.SUETAKE,K.INOUE,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF PLECKSTRIN HOMOLOGY DOMAIN FROM HUMAN JRNL TITL 2 KIAA1058 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7 REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WG7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023546. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.69MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM PHOSPHATE BUFFER; 100MM REMARK 210 NACL; 1MM D10-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2002045, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.860, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATION, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 74 H SER A 77 1.47 REMARK 500 O ASN A 120 H GLN A 124 1.48 REMARK 500 O LYS A 121 H LEU A 125 1.49 REMARK 500 O VAL A 110 H GLU A 114 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -59.21 -143.38 REMARK 500 1 SER A 5 74.43 -119.08 REMARK 500 1 SER A 6 75.50 39.92 REMARK 500 1 LYS A 15 170.54 54.71 REMARK 500 1 THR A 19 170.04 170.10 REMARK 500 1 LYS A 20 147.95 176.00 REMARK 500 1 MET A 29 127.62 67.27 REMARK 500 1 ASN A 30 -179.12 -170.83 REMARK 500 1 SER A 31 -81.97 -52.83 REMARK 500 1 ALA A 32 176.44 -49.34 REMARK 500 1 ARG A 38 47.07 34.31 REMARK 500 1 SER A 39 72.45 74.95 REMARK 500 1 ASP A 52 -43.80 -165.39 REMARK 500 1 LYS A 64 99.04 -63.65 REMARK 500 1 ILE A 65 -142.14 -97.32 REMARK 500 1 SER A 66 -50.37 81.75 REMARK 500 1 CYS A 78 127.78 -39.60 REMARK 500 1 ASN A 84 -80.00 -75.52 REMARK 500 1 ASN A 85 -43.85 86.83 REMARK 500 1 VAL A 87 -71.58 -48.57 REMARK 500 1 ASP A 98 39.14 -89.82 REMARK 500 1 LYS A 99 88.86 51.95 REMARK 500 1 SER A 100 175.06 157.39 REMARK 500 1 ARG A 135 54.99 -104.08 REMARK 500 1 ASN A 136 105.92 -167.26 REMARK 500 1 SER A 139 147.76 -170.46 REMARK 500 1 GLU A 144 99.96 -177.88 REMARK 500 1 SER A 148 165.50 178.76 REMARK 500 2 SER A 2 -61.36 -151.20 REMARK 500 2 SER A 3 140.54 -172.55 REMARK 500 2 SER A 5 109.99 57.37 REMARK 500 2 ALA A 9 121.66 61.77 REMARK 500 2 LEU A 11 124.19 65.38 REMARK 500 2 SER A 13 171.99 174.38 REMARK 500 2 GLN A 14 170.33 62.68 REMARK 500 2 LYS A 15 170.95 -47.97 REMARK 500 2 THR A 19 170.73 170.88 REMARK 500 2 LYS A 20 147.75 177.58 REMARK 500 2 ASN A 30 143.71 171.60 REMARK 500 2 ARG A 38 44.57 33.26 REMARK 500 2 SER A 39 70.53 77.79 REMARK 500 2 PHE A 40 121.85 -38.14 REMARK 500 2 LEU A 50 -175.82 -63.50 REMARK 500 2 LYS A 64 93.41 -65.03 REMARK 500 2 ILE A 65 -140.92 -92.27 REMARK 500 2 SER A 66 -54.04 78.42 REMARK 500 2 LYS A 67 -168.33 -64.72 REMARK 500 2 ASN A 84 -165.48 -108.37 REMARK 500 2 ASN A 85 -39.32 178.41 REMARK 500 2 ASP A 98 41.28 -88.65 REMARK 500 REMARK 500 THIS ENTRY HAS 563 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002101034.1 RELATED DB: TARGETDB DBREF 1WG7 A 8 144 UNP Q9BZ29 DOCK9_HUMAN 165 301 SEQADV 1WG7 GLY A 1 UNP Q9BZ29 CLONING ARTIFACT SEQADV 1WG7 SER A 2 UNP Q9BZ29 CLONING ARTIFACT SEQADV 1WG7 SER A 3 UNP Q9BZ29 CLONING ARTIFACT SEQADV 1WG7 GLY A 4 UNP Q9BZ29 CLONING ARTIFACT SEQADV 1WG7 SER A 5 UNP Q9BZ29 CLONING ARTIFACT SEQADV 1WG7 SER A 6 UNP Q9BZ29 CLONING ARTIFACT SEQADV 1WG7 GLY A 7 UNP Q9BZ29 CLONING ARTIFACT SEQADV 1WG7 SER A 145 UNP Q9BZ29 CLONING ARTIFACT SEQADV 1WG7 GLY A 146 UNP Q9BZ29 CLONING ARTIFACT SEQADV 1WG7 PRO A 147 UNP Q9BZ29 CLONING ARTIFACT SEQADV 1WG7 SER A 148 UNP Q9BZ29 CLONING ARTIFACT SEQADV 1WG7 SER A 149 UNP Q9BZ29 CLONING ARTIFACT SEQADV 1WG7 GLY A 150 UNP Q9BZ29 CLONING ARTIFACT SEQRES 1 A 150 GLY SER SER GLY SER SER GLY ALA ALA SER LEU GLY SER SEQRES 2 A 150 GLN LYS GLY GLY ILE THR LYS HIS GLY TRP LEU TYR LYS SEQRES 3 A 150 GLY ASN MET ASN SER ALA ILE SER VAL THR MET ARG SER SEQRES 4 A 150 PHE LYS ARG ARG PHE PHE HIS LEU ILE GLN LEU GLY ASP SEQRES 5 A 150 GLY SER TYR ASN LEU ASN PHE TYR LYS ASP GLU LYS ILE SEQRES 6 A 150 SER LYS GLU PRO LYS GLY SER ILE PHE LEU ASP SER CYS SEQRES 7 A 150 MET GLY VAL VAL GLN ASN ASN LYS VAL ARG ARG PHE ALA SEQRES 8 A 150 PHE GLU LEU LYS MET GLN ASP LYS SER SER TYR LEU LEU SEQRES 9 A 150 ALA ALA ASP SER GLU VAL GLU MET GLU GLU TRP ILE THR SEQRES 10 A 150 ILE LEU ASN LYS ILE LEU GLN LEU ASN PHE GLU ALA ALA SEQRES 11 A 150 MET GLN GLU LYS ARG ASN GLY ASP SER HIS GLU ASP ASP SEQRES 12 A 150 GLU SER GLY PRO SER SER GLY HELIX 1 1 ALA A 32 ARG A 38 1 7 HELIX 2 2 SER A 108 ARG A 135 1 28 SHEET 1 A 4 HIS A 21 LYS A 26 0 SHEET 2 A 4 LYS A 41 GLN A 49 -1 O ARG A 43 N LEU A 24 SHEET 3 A 4 TYR A 55 TYR A 60 -1 O ASN A 58 N HIS A 46 SHEET 4 A 4 GLY A 71 ILE A 73 -1 O ILE A 73 N LEU A 57 SHEET 1 B 3 GLY A 80 VAL A 81 0 SHEET 2 B 3 ALA A 91 LYS A 95 -1 O LYS A 95 N GLY A 80 SHEET 3 B 3 SER A 101 ALA A 105 -1 O TYR A 102 N LEU A 94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1