HEADER SUGAR BINDING PROTEIN 28-MAY-04 1WGQ TITLE SOLUTION STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN OF MOUSE ETHANOL TITLE 2 DECREASED 4 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FYVE, RHOGEF AND PH DOMAIN CONTAINING 6; ETHANOL DECREASED COMPND 3 4; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PLECKSTRIN HOMOLOGY DOMAIN; COMPND 6 SYNONYM: ETHANOL DECREASED 4 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 4933427A08; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030212-46; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PLECKSTRIN HOMOLOY DOMAIN, SIGNAL TRANSDUCTION, STRUCTURAL GENOMICS, KEYWDS 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SUGAR BINDING KEYWDS 3 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.LI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WGQ 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WGQ 1 VERSN REVDAT 1 28-NOV-04 1WGQ 0 JRNL AUTH H.LI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN OF JRNL TITL 2 MOUSE ETHANOL DECREASED 4 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.7 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WGQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023561. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.22MM PLECKSTRIN HOMOLOGY REMARK 210 DOMAIN U-13C, 15N; 20MM REMARK 210 PHOSPHATE BUFFER NA (PH6.0); REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.897, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 73 H PHE A 80 1.52 REMARK 500 O SER A 17 H VAL A 82 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 145.88 61.41 REMARK 500 1 SER A 6 87.67 -158.38 REMARK 500 1 LYS A 21 -0.55 78.29 REMARK 500 1 ALA A 40 -46.03 -132.31 REMARK 500 1 GLU A 43 43.93 -94.34 REMARK 500 1 LEU A 53 36.30 -92.75 REMARK 500 1 ASP A 63 171.40 59.21 REMARK 500 1 SER A 68 35.02 -161.85 REMARK 500 1 LYS A 76 -6.65 84.12 REMARK 500 1 ASP A 86 -78.21 -44.81 REMARK 500 1 ILE A 95 -70.49 -53.66 REMARK 500 1 SER A 104 16.24 -140.87 REMARK 500 2 SER A 2 -58.14 -132.58 REMARK 500 2 SER A 3 89.96 50.60 REMARK 500 2 SER A 5 -82.01 65.21 REMARK 500 2 SER A 6 81.95 71.46 REMARK 500 2 SER A 11 133.13 -172.66 REMARK 500 2 LYS A 32 -102.90 -76.26 REMARK 500 2 LYS A 34 19.49 56.33 REMARK 500 2 ALA A 40 -46.29 -135.18 REMARK 500 2 ASP A 63 156.02 71.52 REMARK 500 2 GLU A 67 -44.09 -130.29 REMARK 500 2 SER A 68 34.07 -151.59 REMARK 500 2 SER A 107 88.95 52.70 REMARK 500 3 SER A 3 169.07 179.91 REMARK 500 3 SER A 6 -53.48 -148.09 REMARK 500 3 SER A 8 155.76 -49.08 REMARK 500 3 SER A 11 148.57 -178.40 REMARK 500 3 ALA A 40 -46.13 -130.23 REMARK 500 3 GLU A 43 46.07 -101.64 REMARK 500 3 ASP A 44 170.36 -58.02 REMARK 500 3 PHE A 56 -177.12 -64.51 REMARK 500 3 ASP A 63 176.44 52.46 REMARK 500 3 SER A 68 30.47 -163.56 REMARK 500 3 LYS A 76 -55.40 75.38 REMARK 500 4 SER A 2 81.47 62.04 REMARK 500 4 SER A 6 -58.35 -140.30 REMARK 500 4 SER A 11 145.01 -171.84 REMARK 500 4 GLU A 43 53.22 -110.05 REMARK 500 4 LEU A 53 39.85 -93.08 REMARK 500 4 PHE A 56 178.61 -58.08 REMARK 500 4 GLU A 67 58.84 -142.07 REMARK 500 4 SER A 68 -25.71 158.72 REMARK 500 4 LYS A 76 -2.95 83.58 REMARK 500 4 ASP A 86 -74.92 -56.34 REMARK 500 5 SER A 2 124.83 178.97 REMARK 500 5 SER A 11 125.40 -172.46 REMARK 500 5 LYS A 21 -3.42 80.25 REMARK 500 5 ASN A 33 -77.62 67.11 REMARK 500 5 LYS A 34 17.61 -143.81 REMARK 500 REMARK 500 THIS ENTRY HAS 222 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007011951.1 RELATED DB: TARGETDB DBREF 1WGQ A 8 103 UNP Q69ZL1 FGD6_MOUSE 1302 1397 SEQADV 1WGQ GLY A 1 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ SER A 2 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ SER A 3 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ GLY A 4 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ SER A 5 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ SER A 6 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ GLY A 7 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ SER A 104 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ GLY A 105 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ PRO A 106 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ SER A 107 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ SER A 108 UNP Q69ZL1 CLONING ARTIFACT SEQADV 1WGQ GLY A 109 UNP Q69ZL1 CLONING ARTIFACT SEQRES 1 A 109 GLY SER SER GLY SER SER GLY SER THR MET SER GLY TYR SEQRES 2 A 109 LEU TYR ARG SER LYS GLY SER LYS LYS PRO TRP LYS HIS SEQRES 3 A 109 LEU TRP PHE VAL ILE LYS ASN LYS VAL LEU TYR THR TYR SEQRES 4 A 109 ALA ALA SER GLU ASP VAL ALA ALA LEU GLU SER GLN PRO SEQRES 5 A 109 LEU LEU GLY PHE THR VAL THR LEU VAL LYS ASP GLU ASN SEQRES 6 A 109 SER GLU SER LYS VAL PHE GLN LEU LEU HIS LYS GLY MET SEQRES 7 A 109 VAL PHE TYR VAL PHE LYS ALA ASP ASP ALA HIS SER THR SEQRES 8 A 109 GLN ARG TRP ILE ASP ALA PHE GLN GLU GLY THR VAL SER SEQRES 9 A 109 GLY PRO SER SER GLY HELIX 1 1 ALA A 88 THR A 102 1 15 SHEET 1 A 7 GLU A 49 PRO A 52 0 SHEET 2 A 7 VAL A 35 TYR A 39 -1 N THR A 38 O GLU A 49 SHEET 3 A 7 LYS A 25 LYS A 32 -1 N LYS A 32 O VAL A 35 SHEET 4 A 7 SER A 11 SER A 17 -1 N LEU A 14 O LEU A 27 SHEET 5 A 7 MET A 78 LYS A 84 -1 O VAL A 82 N SER A 17 SHEET 6 A 7 VAL A 70 HIS A 75 -1 N LEU A 73 O PHE A 80 SHEET 7 A 7 PHE A 56 LEU A 60 -1 N THR A 57 O LEU A 74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1