HEADER HYDROLASE 28-MAY-04 1WH0 TITLE SOLUTION STRUCTURE OF THE CS DOMAIN OF HUMAN USP19 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CS DOMAIN; COMPND 5 SYNONYM: UBIQUITIN SPECIFIC PROTEASE 19, UBIQUITIN THIOLESTERASE 19, COMPND 6 UBIQUITIN-SPECIFIC PROCESSING PROTEASE 19, DEUBIQUITINATING ENZYME COMPND 7 19, ZINC FINGER MYND DOMAIN CONTAINING PROTEIN 9; COMPND 8 EC: 3.1.2.15; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA HK08201; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040114-29; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS USP, CS DOMAIN, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAKANISHI,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WH0 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WH0 1 VERSN REVDAT 1 28-NOV-04 1WH0 0 JRNL AUTH T.NAKANISHI,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE CS DOMAIN OF HUMAN USP19 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WH0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023570. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.15MM CS DOMAIN U-15N, 13C; REMARK 210 20MM NAPI; 100MM NACL; 2MM D-DTT; REMARK 210 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 20030801, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.8999, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 11 5.51 -69.70 REMARK 500 1 VAL A 38 146.37 -172.44 REMARK 500 1 ASP A 54 -178.73 -171.33 REMARK 500 1 PHE A 55 117.54 -164.31 REMARK 500 1 ALA A 100 -75.39 -39.62 REMARK 500 1 PRO A 121 -173.02 -69.71 REMARK 500 1 ALA A 123 138.09 -38.27 REMARK 500 1 SER A 132 100.20 -36.60 REMARK 500 2 SER A 6 -179.90 -69.20 REMARK 500 2 GLU A 10 155.80 -41.70 REMARK 500 2 PRO A 11 3.52 -69.67 REMARK 500 2 LYS A 21 104.21 -56.00 REMARK 500 2 ASP A 54 -178.05 -172.37 REMARK 500 2 PHE A 55 115.53 -164.97 REMARK 500 2 ALA A 100 -75.18 -39.97 REMARK 500 2 SER A 112 53.58 -90.54 REMARK 500 2 PRO A 121 -174.04 -69.83 REMARK 500 2 ALA A 128 173.53 -48.38 REMARK 500 2 PRO A 131 -179.66 -69.76 REMARK 500 3 SER A 3 96.80 -62.54 REMARK 500 3 GLU A 10 138.40 -34.54 REMARK 500 3 PRO A 11 5.40 -69.77 REMARK 500 3 VAL A 38 148.32 -173.65 REMARK 500 3 ASP A 54 -177.42 -171.49 REMARK 500 3 PHE A 55 115.88 -161.95 REMARK 500 3 ALA A 100 -76.56 -39.89 REMARK 500 3 PRO A 121 -173.05 -69.77 REMARK 500 3 ARG A 124 41.27 34.07 REMARK 500 4 GLU A 10 145.41 -37.74 REMARK 500 4 PRO A 11 3.72 -69.75 REMARK 500 4 LYS A 21 103.35 -58.36 REMARK 500 4 ASP A 54 -175.18 -175.84 REMARK 500 4 ALA A 100 -76.18 -40.58 REMARK 500 4 PRO A 121 -173.70 -69.75 REMARK 500 4 ALA A 122 48.29 73.76 REMARK 500 4 ALA A 123 122.67 -170.46 REMARK 500 4 PRO A 131 -176.45 -69.77 REMARK 500 5 ASP A 9 50.82 -98.11 REMARK 500 5 PRO A 11 2.47 -69.77 REMARK 500 5 VAL A 38 146.02 -170.19 REMARK 500 5 ASP A 54 -178.57 -172.57 REMARK 500 5 PHE A 55 114.82 -166.79 REMARK 500 5 ALA A 100 -75.10 -47.85 REMARK 500 5 LEU A 118 -73.37 -38.61 REMARK 500 5 PRO A 121 -176.73 -69.72 REMARK 500 6 SER A 2 40.86 -105.85 REMARK 500 6 SER A 6 50.51 39.96 REMARK 500 6 GLU A 10 145.20 -35.15 REMARK 500 6 PRO A 11 5.50 -69.82 REMARK 500 6 LYS A 21 106.39 -57.23 REMARK 500 REMARK 500 THIS ENTRY HAS 200 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 AUTHOR DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 AUTHOR DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000870.1 RELATED DB: TARGETDB DBREF 1WH0 A 8 128 UNP O94966 UBP19_HUMAN 326 446 SEQADV 1WH0 GLY A 1 UNP O94966 CLONING ARTIFACT SEQADV 1WH0 SER A 2 UNP O94966 CLONING ARTIFACT SEQADV 1WH0 SER A 3 UNP O94966 CLONING ARTIFACT SEQADV 1WH0 GLY A 4 UNP O94966 CLONING ARTIFACT SEQADV 1WH0 SER A 5 UNP O94966 CLONING ARTIFACT SEQADV 1WH0 SER A 6 UNP O94966 CLONING ARTIFACT SEQADV 1WH0 GLY A 7 UNP O94966 CLONING ARTIFACT SEQADV 1WH0 SER A 129 UNP O94966 CLONING ARTIFACT SEQADV 1WH0 GLY A 130 UNP O94966 CLONING ARTIFACT SEQADV 1WH0 PRO A 131 UNP O94966 CLONING ARTIFACT SEQADV 1WH0 SER A 132 UNP O94966 CLONING ARTIFACT SEQADV 1WH0 SER A 133 UNP O94966 CLONING ARTIFACT SEQADV 1WH0 GLY A 134 UNP O94966 CLONING ARTIFACT SEQRES 1 A 134 GLY SER SER GLY SER SER GLY VAL ASP GLU PRO GLU SER SEQRES 2 A 134 MET VAL ASN LEU ALA PHE VAL LYS ASN ASP SER TYR GLU SEQRES 3 A 134 LYS GLY PRO ASP SER VAL VAL VAL HIS VAL TYR VAL LYS SEQRES 4 A 134 GLU ILE CYS ARG ASP THR SER ARG VAL LEU PHE ARG GLU SEQRES 5 A 134 GLN ASP PHE THR LEU ILE PHE GLN THR ARG ASP GLY ASN SEQRES 6 A 134 PHE LEU ARG LEU HIS PRO GLY CYS GLY PRO HIS THR THR SEQRES 7 A 134 PHE ARG TRP GLN VAL LYS LEU ARG ASN LEU ILE GLU PRO SEQRES 8 A 134 GLU GLN CYS THR PHE CYS PHE THR ALA SER ARG ILE ASP SEQRES 9 A 134 ILE CYS LEU ARG LYS ARG GLN SER GLN ARG TRP GLY GLY SEQRES 10 A 134 LEU GLU ALA PRO ALA ALA ARG VAL GLY GLY ALA SER GLY SEQRES 11 A 134 PRO SER SER GLY HELIX 1 1 PRO A 11 SER A 13 5 3 HELIX 2 2 GLY A 64 LEU A 69 1 6 SHEET 1 A 8 VAL A 15 LEU A 17 0 SHEET 2 A 8 ASN A 22 LYS A 27 0 SHEET 3 A 8 SER A 31 TYR A 37 -1 O HIS A 35 N ASP A 23 SHEET 4 A 8 ARG A 47 PHE A 50 -1 N LEU A 49 O THR A 56 SHEET 5 A 8 ASP A 54 ILE A 58 -1 N LEU A 57 O TRP A 81 SHEET 6 A 8 PHE A 79 LYS A 84 1 O ARG A 80 N VAL A 15 SHEET 7 A 8 THR A 95 PHE A 98 -1 N CYS A 97 O ASP A 104 SHEET 8 A 8 ARG A 102 ARG A 108 -1 O LEU A 107 N VAL A 32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1