data_1WH8 # _entry.id 1WH8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WH8 pdb_00001wh8 10.2210/pdb1wh8/pdb RCSB RCSB023578 ? ? WWPDB D_1000023578 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002100285.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WH8 _pdbx_database_status.recvd_initial_deposition_date 2004-05-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nameki, N.' 1 'Tochio, N.' 2 'Koshiba, S.' 3 'Kigawa, T.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structure of the third CUT domain of human Homeobox protein Cux-2' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nameki, N.' 1 ? primary 'Tochio, N.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Homeobox protein Cux-2' _entity.formula_weight 12097.705 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'CUT domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cut-like 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGYSGSQAPGGIQEIVAMSPELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGR EPFVRMQLWLNDPHNVEKLRDMKKLSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGYSGSQAPGGIQEIVAMSPELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGR EPFVRMQLWLNDPHNVEKLRDMKKLSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002100285.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 TYR n 1 9 SER n 1 10 GLY n 1 11 SER n 1 12 GLN n 1 13 ALA n 1 14 PRO n 1 15 GLY n 1 16 GLY n 1 17 ILE n 1 18 GLN n 1 19 GLU n 1 20 ILE n 1 21 VAL n 1 22 ALA n 1 23 MET n 1 24 SER n 1 25 PRO n 1 26 GLU n 1 27 LEU n 1 28 ASP n 1 29 THR n 1 30 TYR n 1 31 SER n 1 32 ILE n 1 33 THR n 1 34 LYS n 1 35 ARG n 1 36 VAL n 1 37 LYS n 1 38 GLU n 1 39 VAL n 1 40 LEU n 1 41 THR n 1 42 ASP n 1 43 ASN n 1 44 ASN n 1 45 LEU n 1 46 GLY n 1 47 GLN n 1 48 ARG n 1 49 LEU n 1 50 PHE n 1 51 GLY n 1 52 GLU n 1 53 SER n 1 54 ILE n 1 55 LEU n 1 56 GLY n 1 57 LEU n 1 58 THR n 1 59 GLN n 1 60 GLY n 1 61 SER n 1 62 VAL n 1 63 SER n 1 64 ASP n 1 65 LEU n 1 66 LEU n 1 67 SER n 1 68 ARG n 1 69 PRO n 1 70 LYS n 1 71 PRO n 1 72 TRP n 1 73 HIS n 1 74 LYS n 1 75 LEU n 1 76 SER n 1 77 LEU n 1 78 LYS n 1 79 GLY n 1 80 ARG n 1 81 GLU n 1 82 PRO n 1 83 PHE n 1 84 VAL n 1 85 ARG n 1 86 MET n 1 87 GLN n 1 88 LEU n 1 89 TRP n 1 90 LEU n 1 91 ASN n 1 92 ASP n 1 93 PRO n 1 94 HIS n 1 95 ASN n 1 96 VAL n 1 97 GLU n 1 98 LYS n 1 99 LEU n 1 100 ARG n 1 101 ASP n 1 102 MET n 1 103 LYS n 1 104 LYS n 1 105 LEU n 1 106 SER n 1 107 GLY n 1 108 PRO n 1 109 SER n 1 110 SER n 1 111 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'KAZUSA cDNA hg03205' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040114-59 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CUTL2_HUMAN _struct_ref.pdbx_db_accession O14529 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;YSGSQAPGGIQEIVAMSPELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQ LWLNDPHNVEKLRDMKKL ; _struct_ref.pdbx_align_begin 1047 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WH8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 105 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O14529 _struct_ref_seq.db_align_beg 1047 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1144 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 105 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WH8 GLY A 1 ? UNP O14529 ? ? 'cloning artifact' 1 1 1 1WH8 SER A 2 ? UNP O14529 ? ? 'cloning artifact' 2 2 1 1WH8 SER A 3 ? UNP O14529 ? ? 'cloning artifact' 3 3 1 1WH8 GLY A 4 ? UNP O14529 ? ? 'cloning artifact' 4 4 1 1WH8 SER A 5 ? UNP O14529 ? ? 'cloning artifact' 5 5 1 1WH8 SER A 6 ? UNP O14529 ? ? 'cloning artifact' 6 6 1 1WH8 GLY A 7 ? UNP O14529 ? ? 'cloning artifact' 7 7 1 1WH8 SER A 106 ? UNP O14529 ? ? 'cloning artifact' 106 8 1 1WH8 GLY A 107 ? UNP O14529 ? ? 'cloning artifact' 107 9 1 1WH8 PRO A 108 ? UNP O14529 ? ? 'cloning artifact' 108 10 1 1WH8 SER A 109 ? UNP O14529 ? ? 'cloning artifact' 109 11 1 1WH8 SER A 110 ? UNP O14529 ? ? 'cloning artifact' 110 12 1 1WH8 GLY A 111 ? UNP O14529 ? ? 'cloning artifact' 111 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_15N-separated_NOESY 2 1 1 3D_13C-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '120 mM' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.1mM CUT domain U-15N, 13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 700 # _pdbx_nmr_refine.entry_id 1WH8 _pdbx_nmr_refine.method 'torsion angle dynamics, restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1WH8 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1WH8 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 3.5 collection Bruker 1 NMRPipe 20020425 processing 'Delaglio, F.' 2 NMRView 5.0.4 'data analysis' 'Johnson, B.A.' 3 KUJIRA 0.901 'data analysis' 'Kobayashi, N.' 4 CYANA 1.0.7 'structure solution' 'Guentert, P.' 5 OPALp ? refinement 'Koradi, R.,Billeter, M.,Guentert, P.' 6 # _exptl.entry_id 1WH8 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1WH8 _struct.title 'Solution structure of the third CUT domain of human Homeobox protein Cux-2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WH8 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'CUT domain, Structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSCRIPTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 16 ? SER A 24 ? GLY A 16 SER A 24 1 ? 9 HELX_P HELX_P2 2 ASP A 28 ? ASN A 43 ? ASP A 28 ASN A 43 1 ? 16 HELX_P HELX_P3 3 GLY A 46 ? ILE A 54 ? GLY A 46 ILE A 54 1 ? 9 HELX_P HELX_P4 4 THR A 58 ? ARG A 68 ? THR A 58 ARG A 68 1 ? 11 HELX_P HELX_P5 5 SER A 76 ? ASP A 92 ? SER A 76 ASP A 92 1 ? 17 HELX_P HELX_P6 6 HIS A 94 ? LYS A 104 ? HIS A 94 LYS A 104 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1WH8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WH8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 TYR 8 8 8 TYR TYR A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 MET 23 23 23 MET MET A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 TRP 72 72 72 TRP TRP A . n A 1 73 HIS 73 73 73 HIS HIS A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 MET 86 86 86 MET MET A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 TRP 89 89 89 TRP TRP A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 MET 102 102 102 MET MET A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 GLY 111 111 111 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 17 _pdbx_validate_close_contact.auth_atom_id_1 OE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 52 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 HG1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 58 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.58 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD A ARG 35 ? ? NE A ARG 35 ? ? CZ A ARG 35 ? ? 133.30 123.60 9.70 1.40 N 2 1 NE A ARG 35 ? ? CZ A ARG 35 ? ? NH1 A ARG 35 ? ? 123.58 120.30 3.28 0.50 N 3 1 NE A ARG 35 ? ? CZ A ARG 35 ? ? NH2 A ARG 35 ? ? 116.28 120.30 -4.02 0.50 N 4 1 NE A ARG 80 ? ? CZ A ARG 80 ? ? NH1 A ARG 80 ? ? 123.90 120.30 3.60 0.50 N 5 9 NE A ARG 80 ? ? CZ A ARG 80 ? ? NH2 A ARG 80 ? ? 117.11 120.30 -3.19 0.50 N 6 10 NE A ARG 80 ? ? CZ A ARG 80 ? ? NH2 A ARG 80 ? ? 117.06 120.30 -3.24 0.50 N 7 11 NE A ARG 80 ? ? CZ A ARG 80 ? ? NH2 A ARG 80 ? ? 117.24 120.30 -3.06 0.50 N 8 15 NE A ARG 80 ? ? CZ A ARG 80 ? ? NH2 A ARG 80 ? ? 117.26 120.30 -3.04 0.50 N 9 19 NE A ARG 80 ? ? CZ A ARG 80 ? ? NH1 A ARG 80 ? ? 123.43 120.30 3.13 0.50 N 10 19 NE A ARG 80 ? ? CZ A ARG 80 ? ? NH2 A ARG 80 ? ? 116.51 120.30 -3.79 0.50 N 11 19 NE A ARG 85 ? ? CZ A ARG 85 ? ? NH2 A ARG 85 ? ? 117.20 120.30 -3.10 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 28 ? ? -53.97 97.77 2 1 LYS A 104 ? ? 33.36 -134.16 3 1 SER A 110 ? ? 53.15 -170.04 4 2 ASP A 28 ? ? -62.35 97.53 5 2 ASN A 44 ? ? 43.79 72.56 6 2 SER A 76 ? ? -78.41 -169.96 7 2 LYS A 104 ? ? 36.33 -135.96 8 2 LEU A 105 ? ? 33.08 73.65 9 3 ALA A 13 ? ? 53.81 -173.55 10 3 PRO A 14 ? ? -89.34 49.16 11 3 GLU A 52 ? ? -93.98 -65.46 12 3 LEU A 55 ? ? -89.19 -77.75 13 3 SER A 106 ? ? -138.93 -46.92 14 3 SER A 110 ? ? -173.41 -38.64 15 4 ILE A 17 ? ? -151.26 -38.74 16 4 PRO A 25 ? ? -59.98 173.14 17 4 LEU A 105 ? ? 55.33 11.74 18 5 SER A 9 ? ? 50.73 -162.29 19 5 GLU A 26 ? ? -63.47 93.75 20 5 LYS A 104 ? ? 51.15 167.04 21 5 LEU A 105 ? ? 44.71 84.77 22 5 SER A 106 ? ? -153.24 -19.69 23 5 SER A 110 ? ? 58.18 -170.54 24 6 SER A 5 ? ? -174.50 95.39 25 6 SER A 9 ? ? -96.68 -85.60 26 6 GLN A 12 ? ? 64.49 105.99 27 6 ASN A 44 ? ? 42.06 81.12 28 6 ARG A 68 ? ? -141.94 57.16 29 6 SER A 106 ? ? -158.42 -28.41 30 6 SER A 110 ? ? 58.72 -162.96 31 7 SER A 5 ? ? -158.79 88.37 32 7 SER A 9 ? ? -159.31 77.98 33 7 GLN A 12 ? ? -54.17 93.28 34 7 GLU A 26 ? ? -56.55 104.64 35 7 ASP A 28 ? ? -67.47 92.01 36 7 GLU A 52 ? ? -92.18 -63.41 37 7 LEU A 55 ? ? -86.69 -70.48 38 7 SER A 76 ? ? -69.01 -173.90 39 7 LYS A 104 ? ? 41.73 -155.81 40 7 SER A 110 ? ? 50.12 -155.28 41 8 SER A 3 ? ? 58.91 -167.92 42 8 SER A 11 ? ? 75.08 160.26 43 8 GLU A 26 ? ? -66.82 97.43 44 8 ASN A 44 ? ? 58.71 19.98 45 9 SER A 11 ? ? 65.42 166.32 46 9 GLN A 12 ? ? -151.68 -54.22 47 9 ALA A 13 ? ? 65.85 155.49 48 9 ASP A 28 ? ? -67.56 89.24 49 9 LYS A 104 ? ? 33.77 -156.71 50 9 PRO A 108 ? ? -82.38 38.66 51 9 SER A 110 ? ? 60.23 165.33 52 10 SER A 3 ? ? -139.17 -70.82 53 10 SER A 11 ? ? -170.59 126.57 54 10 ALA A 13 ? ? 55.51 169.97 55 10 ASP A 28 ? ? -65.69 91.04 56 10 LEU A 55 ? ? -91.44 -87.81 57 10 LYS A 104 ? ? 40.66 -139.07 58 10 LEU A 105 ? ? 43.75 72.12 59 10 SER A 106 ? ? 103.58 26.13 60 11 SER A 2 ? ? 67.29 -73.44 61 11 SER A 3 ? ? 69.61 -48.40 62 11 LEU A 55 ? ? -82.32 -77.01 63 11 LYS A 104 ? ? 39.91 -141.85 64 11 LEU A 105 ? ? 42.03 70.96 65 11 SER A 106 ? ? -161.87 -61.35 66 11 SER A 109 ? ? 157.72 -47.04 67 11 SER A 110 ? ? 38.84 59.45 68 12 SER A 5 ? ? 113.52 -178.56 69 12 PRO A 25 ? ? -55.58 177.90 70 12 ASP A 28 ? ? -46.88 97.36 71 12 ASN A 44 ? ? 35.46 82.54 72 12 GLU A 52 ? ? -90.69 -64.56 73 12 LEU A 55 ? ? -83.78 -99.47 74 12 LYS A 104 ? ? -69.98 -171.93 75 12 SER A 106 ? ? -145.92 -111.61 76 13 SER A 3 ? ? 56.18 -169.15 77 13 SER A 9 ? ? 152.85 169.12 78 13 LYS A 104 ? ? 41.86 -160.47 79 13 PRO A 108 ? ? -75.33 46.42 80 14 GLU A 26 ? ? -58.41 106.72 81 14 LYS A 104 ? ? 43.23 -151.75 82 14 LEU A 105 ? ? 18.10 76.53 83 14 SER A 106 ? ? -154.66 -29.22 84 14 SER A 109 ? ? 66.68 -51.31 85 15 SER A 2 ? ? -178.29 101.20 86 15 SER A 5 ? ? -160.22 88.16 87 15 TYR A 8 ? ? 54.18 81.89 88 15 SER A 11 ? ? 64.08 72.53 89 16 SER A 2 ? ? -146.58 -70.69 90 16 SER A 3 ? ? 59.88 -172.39 91 16 SER A 11 ? ? -66.66 95.39 92 16 LEU A 55 ? ? -83.87 -80.02 93 16 LYS A 104 ? ? 51.13 169.82 94 16 LEU A 105 ? ? 58.39 2.77 95 17 GLU A 26 ? ? -69.41 79.02 96 17 LYS A 104 ? ? 39.73 -120.23 97 17 LEU A 105 ? ? -44.86 98.64 98 17 PRO A 108 ? ? -69.17 85.87 99 18 SER A 6 ? ? 175.03 160.00 100 18 GLN A 12 ? ? 52.13 -157.53 101 18 GLU A 26 ? ? -57.48 100.53 102 18 ASP A 28 ? ? -66.49 94.06 103 18 LYS A 104 ? ? -76.78 -159.75 104 18 SER A 106 ? ? -171.30 -66.86 105 18 SER A 110 ? ? -76.27 -105.38 106 19 SER A 3 ? ? -176.52 131.26 107 19 ASP A 28 ? ? -68.98 86.98 108 20 SER A 9 ? ? -69.81 -71.26 109 20 SER A 11 ? ? 58.35 -174.32 110 20 GLN A 12 ? ? 62.66 163.79 111 20 GLU A 26 ? ? -68.04 83.46 112 20 LYS A 104 ? ? 41.55 -156.43 113 20 LEU A 105 ? ? 36.34 57.93 114 20 SER A 106 ? ? -151.71 -4.13 115 20 SER A 110 ? ? 52.15 -160.93 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 5 SER A 6 ? ? GLY A 7 ? ? 149.11 2 5 SER A 110 ? ? GLY A 111 ? ? -147.59 3 6 PRO A 108 ? ? SER A 109 ? ? 149.46 4 10 SER A 109 ? ? SER A 110 ? ? 132.72 5 15 GLY A 1 ? ? SER A 2 ? ? -141.56 6 15 SER A 110 ? ? GLY A 111 ? ? 141.72 7 18 SER A 110 ? ? GLY A 111 ? ? 133.33 8 20 SER A 109 ? ? SER A 110 ? ? -146.12 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR A 30 ? ? 0.065 'SIDE CHAIN' 2 3 ARG A 48 ? ? 0.078 'SIDE CHAIN' 3 4 ARG A 85 ? ? 0.140 'SIDE CHAIN' 4 5 ARG A 85 ? ? 0.133 'SIDE CHAIN' 5 6 TYR A 8 ? ? 0.083 'SIDE CHAIN' 6 7 ARG A 68 ? ? 0.091 'SIDE CHAIN' 7 7 ARG A 85 ? ? 0.077 'SIDE CHAIN' 8 9 TYR A 30 ? ? 0.089 'SIDE CHAIN' 9 9 ARG A 48 ? ? 0.094 'SIDE CHAIN' 10 10 TYR A 30 ? ? 0.078 'SIDE CHAIN' 11 10 HIS A 94 ? ? 0.090 'SIDE CHAIN' 12 11 ARG A 100 ? ? 0.086 'SIDE CHAIN' 13 13 ARG A 48 ? ? 0.091 'SIDE CHAIN' 14 15 ARG A 35 ? ? 0.076 'SIDE CHAIN' 15 15 HIS A 73 ? ? 0.101 'SIDE CHAIN' 16 17 ARG A 85 ? ? 0.084 'SIDE CHAIN' 17 18 TYR A 8 ? ? 0.070 'SIDE CHAIN' 18 18 ARG A 35 ? ? 0.088 'SIDE CHAIN' 19 19 ARG A 68 ? ? 0.082 'SIDE CHAIN' 20 20 ARG A 35 ? ? 0.097 'SIDE CHAIN' #