data_1WHC # _entry.id 1WHC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WHC pdb_00001whc 10.2210/pdb1whc/pdb RCSB RCSB023582 ? ? WWPDB D_1000023582 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt007006534.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WHC _pdbx_database_status.recvd_initial_deposition_date 2004-05-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Onuki, H.' 1 'Doi-Katayama, Y.' 2 'Hirota, H.' 3 'Tomizawa, T.' 4 'Koshiba, S.' 5 'Kigawa, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution Structure of RSGI RUH-027, a UBA domain from Mus musculus cDNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Onuki, H.' 1 ? primary 'Doi-Katayama, Y.' 2 ? primary 'Hirota, H.' 3 ? primary 'Tomizawa, T.' 4 ? primary 'Koshiba, S.' 5 ? primary 'Kigawa, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'UBA/UBX 33.3 kDa protein' _entity.formula_weight 6593.129 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UBA domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RSGI RUH-027' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLSGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt007006534.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ALA n 1 9 GLU n 1 10 LEU n 1 11 THR n 1 12 ALA n 1 13 LEU n 1 14 GLU n 1 15 SER n 1 16 LEU n 1 17 ILE n 1 18 GLU n 1 19 MET n 1 20 GLY n 1 21 PHE n 1 22 PRO n 1 23 ARG n 1 24 GLY n 1 25 ARG n 1 26 ALA n 1 27 GLU n 1 28 LYS n 1 29 ALA n 1 30 LEU n 1 31 ALA n 1 32 LEU n 1 33 THR n 1 34 GLY n 1 35 ASN n 1 36 GLN n 1 37 GLY n 1 38 ILE n 1 39 GLU n 1 40 ALA n 1 41 ALA n 1 42 MET n 1 43 ASP n 1 44 TRP n 1 45 LEU n 1 46 MET n 1 47 GLU n 1 48 HIS n 1 49 GLU n 1 50 ASP n 1 51 ASP n 1 52 PRO n 1 53 ASP n 1 54 VAL n 1 55 ASP n 1 56 GLU n 1 57 PRO n 1 58 LEU n 1 59 SER n 1 60 GLY n 1 61 PRO n 1 62 SER n 1 63 SER n 1 64 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene BC006701 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P030324-26 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis (E. coli)' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code U33K_MOUSE _struct_ref.pdbx_db_accession Q922Y1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code AELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WHC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 58 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q922Y1 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 52 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 58 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WHC GLY A 1 ? UNP Q922Y1 ? ? 'cloning artifact' 1 1 1 1WHC SER A 2 ? UNP Q922Y1 ? ? 'cloning artifact' 2 2 1 1WHC SER A 3 ? UNP Q922Y1 ? ? 'cloning artifact' 3 3 1 1WHC GLY A 4 ? UNP Q922Y1 ? ? 'cloning artifact' 4 4 1 1WHC SER A 5 ? UNP Q922Y1 ? ? 'cloning artifact' 5 5 1 1WHC SER A 6 ? UNP Q922Y1 ? ? 'cloning artifact' 6 6 1 1WHC GLY A 7 ? UNP Q922Y1 ? ? 'cloning artifact' 7 7 1 1WHC SER A 59 ? UNP Q922Y1 ? ? 'cloning artifact' 59 8 1 1WHC GLY A 60 ? UNP Q922Y1 ? ? 'cloning artifact' 60 9 1 1WHC PRO A 61 ? UNP Q922Y1 ? ? 'cloning artifact' 61 10 1 1WHC SER A 62 ? UNP Q922Y1 ? ? 'cloning artifact' 62 11 1 1WHC SER A 63 ? UNP Q922Y1 ? ? 'cloning artifact' 63 12 1 1WHC GLY A 64 ? UNP Q922Y1 ? ? 'cloning artifact' 64 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.18mM UBA domain U-15N, 13C; 20mM phosphate buffer (pH 6.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 800 # _pdbx_nmr_refine.entry_id 1WHC _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1WHC _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.6 collection Bruker 1 NMRPipe 97.027.12.56 processing 'Delaglio, F.' 2 NMRView 5.0.4 'data analysis' 'Johnson, B.A.' 3 KUJIRA 0.8993 'data analysis' 'Kobatashi, N.' 4 CYANA 1.0.8 'structure solution' 'Guentert, P.' 5 CYANA 1.0.8 refinement 'Guentert, P.' 6 # _exptl.entry_id 1WHC _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1WHC _struct.title 'Solution Structure of RSGI RUH-027, a UBA domain from Mouse cDNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WHC _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.text 'UBA domain, Mus musculus, structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, unknown function' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 11 ? GLU A 18 ? THR A 11 GLU A 18 1 ? 8 HELX_P HELX_P2 2 PRO A 22 ? GLY A 34 ? PRO A 22 GLY A 34 1 ? 13 HELX_P HELX_P3 3 GLY A 37 ? GLU A 49 ? GLY A 37 GLU A 49 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1WHC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WHC _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 MET 19 19 19 MET MET A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 MET 42 42 42 MET MET A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 TRP 44 44 44 TRP TRP A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 HIS 48 48 48 HIS HIS A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLY 64 64 64 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-28 2 'Structure model' 1 1 2008-04-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ARG 25 ? ? H A ALA 29 ? ? 1.51 2 1 O A LEU 30 ? ? H A ASN 35 ? ? 1.52 3 1 O A LYS 28 ? ? H A LEU 32 ? ? 1.53 4 1 O A LEU 16 ? ? H A MET 19 ? ? 1.54 5 1 O A ALA 29 ? ? H A THR 33 ? ? 1.57 6 1 O A LEU 30 ? ? H A GLY 34 ? ? 1.57 7 1 O A ILE 38 ? ? H A MET 42 ? ? 1.59 8 2 O A LEU 30 ? ? H A ASN 35 ? ? 1.50 9 2 O A ARG 25 ? ? H A ALA 29 ? ? 1.56 10 2 O A GLU 27 ? ? H A ALA 31 ? ? 1.60 11 3 O A ARG 25 ? ? H A ALA 29 ? ? 1.51 12 3 O A ALA 26 ? ? H A LEU 30 ? ? 1.55 13 3 O A ILE 38 ? ? H A MET 42 ? ? 1.58 14 3 O A GLU 14 ? ? H A GLU 18 ? ? 1.59 15 4 O A MET 42 ? ? H A MET 46 ? ? 1.53 16 4 O A ALA 26 ? ? H A LEU 30 ? ? 1.55 17 4 O A LEU 30 ? ? H A ASN 35 ? ? 1.56 18 4 O A ARG 25 ? ? H A ALA 29 ? ? 1.56 19 4 O A HIS 48 ? ? H A ASP 51 ? ? 1.58 20 5 O A ARG 25 ? ? H A ALA 29 ? ? 1.51 21 5 O A LEU 30 ? ? H A ASN 35 ? ? 1.53 22 5 O A ILE 38 ? ? H A MET 42 ? ? 1.57 23 6 O A ARG 25 ? ? H A ALA 29 ? ? 1.54 24 6 O A ALA 26 ? ? H A LEU 30 ? ? 1.55 25 6 O A MET 42 ? ? H A MET 46 ? ? 1.56 26 6 O A ASP 43 ? ? H A GLU 47 ? ? 1.57 27 6 O A ARG 23 ? ? H A GLU 27 ? ? 1.59 28 7 O A LYS 28 ? ? H A LEU 32 ? ? 1.52 29 7 O A MET 42 ? ? H A MET 46 ? ? 1.56 30 7 O A LEU 30 ? ? H A ASN 35 ? ? 1.57 31 7 O A HIS 48 ? ? H A ASP 51 ? ? 1.57 32 7 O A ASP 43 ? ? H A GLU 47 ? ? 1.59 33 8 O A GLY 24 ? ? H A LYS 28 ? ? 1.54 34 8 O A LEU 30 ? ? H A ASN 35 ? ? 1.54 35 8 O A MET 42 ? ? H A MET 46 ? ? 1.55 36 9 O A GLU 39 ? ? H A ASP 43 ? ? 1.51 37 9 O A ALA 29 ? ? H A THR 33 ? ? 1.54 38 9 O A MET 42 ? ? H A MET 46 ? ? 1.57 39 10 O A GLY 24 ? ? H A LYS 28 ? ? 1.50 40 10 O A MET 42 ? ? H A MET 46 ? ? 1.52 41 10 O A LEU 30 ? ? H A ASN 35 ? ? 1.54 42 10 O A ALA 29 ? ? H A THR 33 ? ? 1.56 43 10 O A GLU 27 ? ? H A ALA 31 ? ? 1.57 44 10 O A LYS 28 ? ? H A LEU 32 ? ? 1.58 45 11 O A MET 42 ? ? H A MET 46 ? ? 1.54 46 11 O A ARG 25 ? ? H A ALA 29 ? ? 1.55 47 11 O A GLY 24 ? ? H A LYS 28 ? ? 1.57 48 11 O A ILE 38 ? ? H A MET 42 ? ? 1.58 49 12 O A ARG 25 ? ? H A ALA 29 ? ? 1.59 50 12 O A ALA 26 ? ? H A LEU 30 ? ? 1.59 51 12 O A ILE 38 ? ? H A MET 42 ? ? 1.59 52 13 O A ASP 43 ? ? H A GLU 47 ? ? 1.50 53 13 O A ARG 25 ? ? H A ALA 29 ? ? 1.51 54 13 O A LEU 30 ? ? H A ASN 35 ? ? 1.54 55 13 O A MET 42 ? ? H A MET 46 ? ? 1.54 56 13 O A GLY 24 ? ? H A LYS 28 ? ? 1.56 57 13 O A ALA 26 ? ? H A LEU 30 ? ? 1.56 58 14 O A LEU 30 ? ? H A ASN 35 ? ? 1.53 59 14 O A PRO 22 ? ? H A ALA 26 ? ? 1.55 60 14 O A MET 42 ? ? H A MET 46 ? ? 1.58 61 14 O A ARG 23 ? ? H A GLU 27 ? ? 1.59 62 15 O A LYS 28 ? ? H A LEU 32 ? ? 1.52 63 15 O A LEU 30 ? ? H A ASN 35 ? ? 1.53 64 15 O A GLU 27 ? ? H A ALA 31 ? ? 1.54 65 15 O A MET 42 ? ? H A MET 46 ? ? 1.58 66 15 O A GLY 24 ? ? H A LYS 28 ? ? 1.59 67 15 O A ARG 25 ? ? H A ALA 29 ? ? 1.59 68 16 O A LEU 30 ? ? H A ASN 35 ? ? 1.52 69 16 O A PRO 22 ? ? H A ALA 26 ? ? 1.52 70 16 O A ALA 26 ? ? H A LEU 30 ? ? 1.54 71 16 O A ILE 38 ? ? H A MET 42 ? ? 1.59 72 16 O A MET 42 ? ? H A MET 46 ? ? 1.59 73 18 O A LEU 30 ? ? H A ASN 35 ? ? 1.50 74 18 O A GLY 24 ? ? H A LYS 28 ? ? 1.51 75 18 O A ARG 23 ? ? H A GLU 27 ? ? 1.55 76 18 O A ARG 25 ? ? H A ALA 29 ? ? 1.55 77 18 O A MET 42 ? ? H A MET 46 ? ? 1.56 78 18 O A ILE 38 ? ? H A MET 42 ? ? 1.59 79 19 O A LEU 30 ? ? H A ASN 35 ? ? 1.53 80 19 O A LYS 28 ? ? H A LEU 32 ? ? 1.57 81 19 O A GLY 24 ? ? H A LYS 28 ? ? 1.57 82 19 O A MET 42 ? ? H A MET 46 ? ? 1.58 83 19 O A ILE 38 ? ? H A MET 42 ? ? 1.60 84 20 O A LEU 30 ? ? H A ASN 35 ? ? 1.50 85 20 O A MET 42 ? ? H A MET 46 ? ? 1.53 86 20 O A ALA 26 ? ? H A LEU 30 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -126.89 -58.33 2 1 SER A 6 ? ? 61.09 152.97 3 1 ASP A 53 ? ? -164.24 79.96 4 1 LEU A 58 ? ? -114.96 72.76 5 1 SER A 59 ? ? 177.76 -54.56 6 1 SER A 63 ? ? 58.14 163.51 7 2 SER A 2 ? ? 65.57 114.71 8 2 ALA A 8 ? ? 46.92 77.09 9 2 MET A 42 ? ? -38.81 -36.22 10 2 ASP A 55 ? ? -157.75 60.91 11 2 SER A 62 ? ? -157.65 -57.78 12 3 SER A 3 ? ? 61.61 119.81 13 3 SER A 5 ? ? -179.11 103.35 14 3 SER A 6 ? ? -152.81 -56.77 15 3 LEU A 10 ? ? -94.72 -65.44 16 3 THR A 11 ? ? -146.08 -146.65 17 3 ASP A 53 ? ? -169.62 72.42 18 3 GLU A 56 ? ? -49.87 151.93 19 3 LEU A 58 ? ? -112.11 69.69 20 3 SER A 62 ? ? -135.65 -51.07 21 3 SER A 63 ? ? -164.66 118.46 22 4 SER A 3 ? ? -47.46 108.70 23 4 SER A 6 ? ? 49.83 77.30 24 4 ALA A 8 ? ? 52.74 175.89 25 4 THR A 33 ? ? -90.48 33.09 26 4 ASP A 53 ? ? -168.43 74.32 27 4 LEU A 58 ? ? -105.40 69.12 28 4 SER A 59 ? ? 55.97 95.70 29 4 SER A 62 ? ? 60.82 152.00 30 5 ALA A 8 ? ? 63.88 143.04 31 5 VAL A 54 ? ? 47.98 21.79 32 5 ASP A 55 ? ? -143.75 -48.35 33 5 GLU A 56 ? ? -39.46 140.05 34 5 SER A 59 ? ? -148.52 -52.93 35 5 SER A 63 ? ? 74.78 -57.92 36 6 ALA A 8 ? ? -152.34 82.15 37 6 GLU A 9 ? ? 34.25 85.20 38 6 THR A 11 ? ? -148.13 -147.76 39 6 SER A 15 ? ? -36.62 -70.75 40 6 GLU A 56 ? ? -47.08 155.12 41 7 SER A 2 ? ? 60.42 168.57 42 7 SER A 5 ? ? 41.65 79.30 43 7 GLU A 9 ? ? -154.81 87.39 44 7 THR A 33 ? ? -89.80 34.39 45 7 SER A 63 ? ? 47.71 90.44 46 8 SER A 2 ? ? 52.62 92.16 47 8 SER A 3 ? ? -168.56 96.65 48 8 SER A 6 ? ? 57.41 100.94 49 8 LYS A 28 ? ? -52.96 -73.95 50 8 MET A 42 ? ? -37.79 -39.96 51 8 ASP A 55 ? ? -160.20 56.72 52 8 GLU A 56 ? ? -48.19 153.34 53 8 SER A 59 ? ? -157.62 -52.08 54 8 SER A 62 ? ? 47.91 94.61 55 8 SER A 63 ? ? -178.38 99.11 56 9 SER A 2 ? ? -162.75 83.43 57 9 GLU A 9 ? ? 29.69 86.18 58 9 LYS A 28 ? ? -52.03 -74.04 59 9 LEU A 30 ? ? -39.02 -30.58 60 9 THR A 33 ? ? -94.47 30.77 61 9 ASP A 55 ? ? -141.97 57.88 62 9 GLU A 56 ? ? -46.50 150.94 63 9 SER A 59 ? ? 52.41 83.83 64 9 SER A 62 ? ? 46.33 82.95 65 9 SER A 63 ? ? 74.47 -59.21 66 10 SER A 2 ? ? -167.08 -58.91 67 10 ALA A 8 ? ? -47.70 173.26 68 10 ASP A 55 ? ? -153.06 68.26 69 10 SER A 59 ? ? 179.31 170.51 70 10 SER A 63 ? ? -147.22 -58.53 71 11 SER A 2 ? ? -169.83 93.83 72 11 SER A 5 ? ? -46.38 150.23 73 11 GLU A 9 ? ? 29.97 81.11 74 11 THR A 33 ? ? -88.14 41.23 75 11 LEU A 58 ? ? -101.05 77.44 76 11 SER A 59 ? ? -179.47 83.53 77 11 SER A 62 ? ? 72.87 -73.77 78 11 SER A 63 ? ? -65.73 -85.50 79 12 SER A 6 ? ? -165.43 106.85 80 12 GLU A 9 ? ? 38.44 91.83 81 12 THR A 11 ? ? -154.03 -147.63 82 12 ASP A 51 ? ? -49.36 154.46 83 12 ASP A 53 ? ? -162.35 90.94 84 12 SER A 63 ? ? -57.64 108.13 85 13 SER A 2 ? ? 65.61 108.47 86 13 SER A 5 ? ? 73.14 -59.58 87 13 MET A 42 ? ? -38.55 -29.33 88 13 ASP A 51 ? ? -48.48 165.14 89 13 ASP A 53 ? ? -168.37 91.52 90 13 ASP A 55 ? ? -92.35 54.06 91 13 PRO A 57 ? ? -75.02 -162.38 92 13 LEU A 58 ? ? -71.37 -126.14 93 14 SER A 2 ? ? -171.56 -58.43 94 14 LYS A 28 ? ? -40.39 -74.05 95 14 LEU A 30 ? ? -38.96 -38.12 96 14 ALA A 31 ? ? -73.35 -70.96 97 14 SER A 59 ? ? -171.36 148.34 98 15 SER A 2 ? ? -139.82 -58.28 99 15 THR A 11 ? ? -153.81 -145.06 100 15 MET A 42 ? ? -37.69 -33.95 101 15 ASP A 53 ? ? -127.38 -60.73 102 15 VAL A 54 ? ? 48.05 21.75 103 15 ASP A 55 ? ? -141.55 -47.56 104 15 GLU A 56 ? ? -43.68 154.08 105 15 PRO A 57 ? ? -74.99 -169.67 106 15 LEU A 58 ? ? -67.16 -125.20 107 15 SER A 62 ? ? 67.61 161.44 108 16 GLU A 9 ? ? -155.86 89.47 109 16 GLU A 56 ? ? -41.44 153.44 110 16 PRO A 57 ? ? -75.05 -161.76 111 16 LEU A 58 ? ? 77.23 86.69 112 16 SER A 59 ? ? 71.56 73.77 113 17 SER A 6 ? ? -162.98 99.35 114 17 ALA A 8 ? ? 62.03 148.37 115 17 THR A 11 ? ? -152.58 -158.01 116 17 LYS A 28 ? ? -51.47 -73.91 117 17 LEU A 30 ? ? -35.54 -35.07 118 17 VAL A 54 ? ? 47.94 22.05 119 17 ASP A 55 ? ? 82.65 43.75 120 17 PRO A 57 ? ? -75.00 -164.16 121 17 SER A 59 ? ? -175.99 -175.43 122 17 SER A 62 ? ? -179.02 117.82 123 18 SER A 3 ? ? 55.47 81.98 124 18 GLU A 9 ? ? 36.70 87.76 125 18 ASP A 53 ? ? -165.68 108.09 126 18 ASP A 55 ? ? 81.48 -46.81 127 18 GLU A 56 ? ? -36.24 150.06 128 18 PRO A 57 ? ? -75.01 -162.40 129 18 LEU A 58 ? ? -72.65 -126.09 130 18 SER A 62 ? ? -126.43 -55.11 131 18 SER A 63 ? ? 62.59 148.46 132 19 SER A 6 ? ? 62.21 162.98 133 19 GLU A 9 ? ? 36.27 81.81 134 19 VAL A 54 ? ? 28.88 -93.97 135 19 ASP A 55 ? ? -116.67 66.49 136 19 GLU A 56 ? ? -39.30 150.03 137 19 SER A 59 ? ? -172.52 95.70 138 19 SER A 63 ? ? -122.60 -56.26 139 20 SER A 3 ? ? 63.71 147.82 140 20 ALA A 8 ? ? 61.15 76.43 141 20 ASP A 51 ? ? -44.68 167.70 142 20 ASP A 53 ? ? 174.73 85.40 143 20 ASP A 55 ? ? -106.75 41.94 144 20 GLU A 56 ? ? -41.33 151.32 145 20 SER A 59 ? ? 42.62 85.97 146 20 SER A 63 ? ? 55.15 95.50 #