data_1WHD # _entry.id 1WHD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WHD pdb_00001whd 10.2210/pdb1whd/pdb RCSB RCSB023583 ? ? WWPDB D_1000023583 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt007012264.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WHD _pdbx_database_status.recvd_initial_deposition_date 2004-05-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nakanishi, T.' 1 'Nemoto, N.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the PDZ domain of RGS3' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nakanishi, T.' 1 ? primary 'Nemoto, N.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'regulator of G-protein signaling 3' _entity.formula_weight 10714.950 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PDZ domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name RGS3 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGEGDPENGEKLQITIRRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEI RSCPSEIILLVWRVSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGEGDPENGEKLQITIRRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEI RSCPSEIILLVWRVSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt007012264.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLU n 1 9 GLY n 1 10 ASP n 1 11 PRO n 1 12 GLU n 1 13 ASN n 1 14 GLY n 1 15 GLU n 1 16 LYS n 1 17 LEU n 1 18 GLN n 1 19 ILE n 1 20 THR n 1 21 ILE n 1 22 ARG n 1 23 ARG n 1 24 GLY n 1 25 LYS n 1 26 ASP n 1 27 GLY n 1 28 PHE n 1 29 GLY n 1 30 PHE n 1 31 THR n 1 32 ILE n 1 33 CYS n 1 34 CYS n 1 35 ASP n 1 36 SER n 1 37 PRO n 1 38 VAL n 1 39 ARG n 1 40 VAL n 1 41 GLN n 1 42 ALA n 1 43 VAL n 1 44 ASP n 1 45 SER n 1 46 GLY n 1 47 GLY n 1 48 PRO n 1 49 ALA n 1 50 GLU n 1 51 ARG n 1 52 ALA n 1 53 GLY n 1 54 LEU n 1 55 GLN n 1 56 GLN n 1 57 LEU n 1 58 ASP n 1 59 THR n 1 60 VAL n 1 61 LEU n 1 62 GLN n 1 63 LEU n 1 64 ASN n 1 65 GLU n 1 66 ARG n 1 67 PRO n 1 68 VAL n 1 69 GLU n 1 70 HIS n 1 71 TRP n 1 72 LYS n 1 73 CYS n 1 74 VAL n 1 75 GLU n 1 76 LEU n 1 77 ALA n 1 78 HIS n 1 79 GLU n 1 80 ILE n 1 81 ARG n 1 82 SER n 1 83 CYS n 1 84 PRO n 1 85 SER n 1 86 GLU n 1 87 ILE n 1 88 ILE n 1 89 LEU n 1 90 LEU n 1 91 VAL n 1 92 TRP n 1 93 ARG n 1 94 VAL n 1 95 SER n 1 96 GLY n 1 97 PRO n 1 98 SER n 1 99 SER n 1 100 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'RIKEN cDNA 4930506N09' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P030714-81 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RGS3_MOUSE _struct_ref.pdbx_db_accession Q9DC04 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EGDPENGEKLQITIRRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEI ILLVWRV ; _struct_ref.pdbx_align_begin 185 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WHD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 94 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9DC04 _struct_ref_seq.db_align_beg 185 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 271 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 94 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WHD GLY A 1 ? UNP Q9DC04 ? ? 'cloning artifact' 1 1 1 1WHD SER A 2 ? UNP Q9DC04 ? ? 'cloning artifact' 2 2 1 1WHD SER A 3 ? UNP Q9DC04 ? ? 'cloning artifact' 3 3 1 1WHD GLY A 4 ? UNP Q9DC04 ? ? 'cloning artifact' 4 4 1 1WHD SER A 5 ? UNP Q9DC04 ? ? 'cloning artifact' 5 5 1 1WHD SER A 6 ? UNP Q9DC04 ? ? 'cloning artifact' 6 6 1 1WHD GLY A 7 ? UNP Q9DC04 ? ? 'cloning artifact' 7 7 1 1WHD SER A 95 ? UNP Q9DC04 ? ? 'cloning artifact' 95 8 1 1WHD GLY A 96 ? UNP Q9DC04 ? ? 'cloning artifact' 96 9 1 1WHD PRO A 97 ? UNP Q9DC04 ? ? 'cloning artifact' 97 10 1 1WHD SER A 98 ? UNP Q9DC04 ? ? 'cloning artifact' 98 11 1 1WHD SER A 99 ? UNP Q9DC04 ? ? 'cloning artifact' 99 12 1 1WHD GLY A 100 ? UNP Q9DC04 ? ? 'cloning artifact' 100 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_15N-separated_NOESY 2 1 1 3D_13C-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.04mM PDZ domain U-15N, 13C; 20mM NaPi; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer JEOL _pdbx_nmr_spectrometer.model ECA _pdbx_nmr_spectrometer.field_strength 920 # _pdbx_nmr_ensemble.entry_id 1WHD _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1WHD _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal Delta 4.2 collection JEOL 1 NMRPipe 20030801 processing 'Delaglio, F.' 2 NMRView 5.0.4 'data analysis' 'Johnson, B.A.' 3 KUJIRA 0.8999 'data analysis' 'Kobayashi, N.' 4 CYANA 2.0.17 'structure solution' 'Guntert, P.' 5 CYANA 2.0.17 refinement 'Guntert, P.' 6 # _exptl.entry_id 1WHD _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1WHD _struct.title 'Solution structure of the PDZ domain of RGS3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WHD _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;Regulator of G-protein signaling, PDZ domain, Structural Genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 49 ? ALA A 52 ? ALA A 49 ALA A 52 1 ? 4 HELX_P HELX_P2 2 CYS A 73 ? SER A 82 ? CYS A 73 SER A 82 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 1 -0.03 2 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 2 -0.03 3 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 3 -0.01 4 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 4 -0.01 5 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 5 -0.07 6 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 6 -0.05 7 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 7 0.05 8 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 8 -0.05 9 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 9 0.03 10 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 10 -0.05 11 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 11 0.02 12 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 12 -0.03 13 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 13 -0.01 14 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 14 -0.05 15 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 15 -0.09 16 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 16 -0.06 17 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 17 -0.04 18 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 18 -0.04 19 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 19 0.01 20 SER 36 A . ? SER 36 A PRO 37 A ? PRO 37 A 20 0.06 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 15 ? ARG A 22 ? GLU A 15 ARG A 22 A 2 PHE A 30 ? ILE A 32 ? PHE A 30 ILE A 32 A 3 VAL A 40 ? VAL A 43 ? VAL A 40 VAL A 43 A 4 VAL A 60 ? LEU A 63 ? VAL A 60 LEU A 63 A 5 ARG A 66 ? PRO A 67 ? ARG A 66 PRO A 67 A 6 GLU A 86 ? ARG A 93 ? GLU A 86 ARG A 93 # _database_PDB_matrix.entry_id 1WHD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WHD _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 CYS 33 33 33 CYS CYS A . n A 1 34 CYS 34 34 34 CYS CYS A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 GLN 55 55 55 GLN GLN A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 TRP 71 71 71 TRP TRP A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 CYS 73 73 73 CYS CYS A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 HIS 78 78 78 HIS HIS A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 CYS 83 83 83 CYS CYS A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 TRP 92 92 92 TRP TRP A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 GLY 100 100 100 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_sheet # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_sheet.number_strands' # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX AUTHOR DETERMINATION METHOD: AUTHOR DETERMINED ; 700 ;SHEET AUTHOR DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? -174.23 143.29 2 1 ASN A 13 ? ? -86.42 -74.16 3 1 LYS A 25 ? ? -165.66 111.87 4 1 ASP A 26 ? ? 34.86 38.84 5 1 CYS A 34 ? ? -173.25 -179.26 6 1 SER A 36 ? ? -32.53 121.91 7 1 ALA A 77 ? ? -38.90 -37.65 8 1 SER A 85 ? ? -87.07 -72.47 9 1 PRO A 97 ? ? -69.84 2.79 10 1 SER A 98 ? ? -34.41 101.68 11 2 PRO A 11 ? ? -69.83 -173.92 12 2 ASP A 26 ? ? -175.17 105.05 13 2 CYS A 34 ? ? -177.85 148.93 14 2 SER A 36 ? ? -32.75 124.50 15 2 ALA A 77 ? ? -32.49 -38.56 16 2 PRO A 97 ? ? -69.82 4.39 17 2 SER A 98 ? ? -34.38 100.23 18 3 SER A 2 ? ? -85.27 49.15 19 3 SER A 3 ? ? 34.45 45.82 20 3 LYS A 25 ? ? -173.25 134.48 21 3 SER A 36 ? ? -34.44 122.67 22 3 ALA A 77 ? ? -34.66 -37.39 23 3 SER A 85 ? ? -92.34 -72.97 24 4 GLU A 8 ? ? 36.97 41.86 25 4 PHE A 28 ? ? -66.24 91.81 26 4 SER A 36 ? ? -30.78 120.60 27 4 ALA A 42 ? ? -171.18 147.85 28 4 GLU A 65 ? ? 47.25 29.99 29 4 ALA A 77 ? ? -33.74 -39.07 30 4 SER A 85 ? ? -42.95 -75.19 31 4 PRO A 97 ? ? -69.76 89.96 32 5 SER A 6 ? ? -45.72 153.96 33 5 ARG A 23 ? ? -47.15 97.30 34 5 PHE A 28 ? ? -51.61 87.76 35 5 CYS A 34 ? ? -175.82 -176.25 36 5 SER A 36 ? ? -30.57 119.97 37 5 SER A 85 ? ? -39.90 -75.17 38 6 PRO A 11 ? ? -69.74 -176.63 39 6 ARG A 23 ? ? -53.61 101.11 40 6 PHE A 28 ? ? -97.19 -60.95 41 6 SER A 36 ? ? -32.14 120.63 42 6 SER A 45 ? ? -76.65 48.54 43 6 ALA A 77 ? ? -33.46 -39.57 44 6 SER A 82 ? ? -38.08 -36.36 45 6 PRO A 97 ? ? -69.80 2.82 46 6 SER A 98 ? ? -34.58 141.82 47 7 SER A 36 ? ? -31.39 119.49 48 7 LEU A 61 ? ? -93.88 -61.96 49 7 CYS A 73 ? ? -35.26 -31.78 50 7 VAL A 74 ? ? -66.84 -75.46 51 7 ALA A 77 ? ? -34.87 -39.16 52 7 SER A 85 ? ? -47.49 -71.56 53 7 PRO A 97 ? ? -69.75 91.27 54 8 GLU A 8 ? ? -58.87 94.82 55 8 GLU A 12 ? ? -63.80 98.43 56 8 CYS A 34 ? ? -176.68 -177.70 57 8 SER A 36 ? ? -30.95 119.70 58 8 GLN A 56 ? ? -53.84 176.07 59 8 LEU A 61 ? ? -93.15 -64.41 60 8 SER A 85 ? ? -53.57 -70.71 61 8 PRO A 97 ? ? -69.78 2.44 62 8 SER A 98 ? ? -34.61 130.75 63 9 SER A 5 ? ? -89.46 42.10 64 9 PRO A 11 ? ? -69.79 -174.68 65 9 ASN A 13 ? ? 36.36 29.51 66 9 LYS A 25 ? ? -103.06 -61.79 67 9 SER A 36 ? ? -30.40 120.44 68 9 SER A 85 ? ? -44.98 -74.38 69 10 ASN A 13 ? ? -57.23 -71.25 70 10 ARG A 23 ? ? -33.37 99.72 71 10 LYS A 25 ? ? -44.25 98.13 72 10 PHE A 28 ? ? -39.51 93.30 73 10 CYS A 34 ? ? -174.63 -177.61 74 10 SER A 36 ? ? -32.92 121.74 75 10 GLN A 41 ? ? -94.99 -70.18 76 10 GLU A 65 ? ? 45.66 26.64 77 10 ALA A 77 ? ? -32.97 -36.72 78 10 SER A 85 ? ? -45.38 -75.12 79 11 ARG A 23 ? ? -38.03 109.12 80 11 LYS A 25 ? ? -63.54 98.68 81 11 PHE A 28 ? ? -34.05 93.80 82 11 CYS A 34 ? ? -178.75 120.87 83 11 SER A 36 ? ? -32.09 126.23 84 11 GLN A 41 ? ? -96.98 -63.53 85 11 GLU A 65 ? ? 44.31 29.72 86 11 ALA A 77 ? ? -39.23 -37.95 87 11 SER A 85 ? ? -47.92 -74.99 88 11 PRO A 97 ? ? -69.77 1.57 89 12 GLU A 8 ? ? -80.17 44.88 90 12 PRO A 11 ? ? -69.76 -173.63 91 12 ARG A 23 ? ? -64.20 91.50 92 12 ASP A 26 ? ? -174.45 105.03 93 12 SER A 36 ? ? -30.13 119.76 94 12 LEU A 61 ? ? -92.43 -61.68 95 12 ALA A 77 ? ? -33.38 -36.10 96 12 SER A 85 ? ? -45.38 -75.15 97 13 SER A 6 ? ? -56.97 100.17 98 13 PHE A 28 ? ? -101.57 -62.53 99 13 CYS A 34 ? ? -176.40 -174.94 100 13 SER A 36 ? ? -29.26 119.60 101 13 GLN A 41 ? ? -90.76 -70.24 102 13 GLN A 56 ? ? -55.87 174.36 103 13 ALA A 77 ? ? -34.02 -33.49 104 13 SER A 82 ? ? -37.69 -37.43 105 13 SER A 85 ? ? -80.41 -75.36 106 14 PRO A 11 ? ? -69.79 -178.83 107 14 ASP A 26 ? ? -64.31 77.71 108 14 PHE A 28 ? ? 45.93 27.49 109 14 CYS A 34 ? ? -176.19 -178.60 110 14 SER A 36 ? ? -31.38 120.69 111 14 ALA A 49 ? ? -90.24 -60.56 112 14 GLU A 65 ? ? 73.55 36.40 113 14 SER A 85 ? ? -59.67 -73.77 114 14 SER A 98 ? ? -35.77 122.73 115 14 SER A 99 ? ? -54.84 -176.10 116 15 PRO A 11 ? ? -69.77 -175.83 117 15 ARG A 23 ? ? -36.75 108.54 118 15 SER A 36 ? ? -33.38 122.54 119 15 ALA A 42 ? ? -172.64 149.49 120 15 SER A 85 ? ? -56.80 -74.80 121 16 SER A 2 ? ? -131.01 -59.23 122 16 PRO A 11 ? ? -69.74 -172.88 123 16 LYS A 25 ? ? -34.54 -39.97 124 16 CYS A 34 ? ? -175.93 -177.02 125 16 SER A 36 ? ? -31.76 121.06 126 16 GLN A 41 ? ? -96.71 -68.57 127 16 VAL A 74 ? ? -62.81 -74.22 128 16 SER A 85 ? ? -79.75 -75.25 129 16 SER A 99 ? ? -51.63 99.38 130 17 SER A 3 ? ? -131.66 -48.87 131 17 ASP A 10 ? ? -170.98 117.49 132 17 ARG A 23 ? ? -50.09 96.62 133 17 LYS A 25 ? ? -45.10 102.62 134 17 PHE A 28 ? ? -62.56 89.54 135 17 CYS A 34 ? ? -177.20 -175.14 136 17 SER A 36 ? ? -31.31 120.56 137 17 PRO A 48 ? ? -69.71 2.30 138 17 ALA A 49 ? ? -100.17 -61.32 139 17 LEU A 61 ? ? -91.04 -62.92 140 17 ALA A 77 ? ? -33.60 -35.41 141 17 SER A 85 ? ? -48.80 -77.16 142 18 SER A 2 ? ? -102.54 -61.68 143 18 SER A 3 ? ? 37.31 43.66 144 18 SER A 5 ? ? -171.99 117.60 145 18 GLU A 8 ? ? 37.98 52.91 146 18 ARG A 23 ? ? -58.71 104.21 147 18 ASP A 26 ? ? -116.32 74.92 148 18 PHE A 28 ? ? -103.48 -60.67 149 18 CYS A 34 ? ? -176.85 -175.00 150 18 SER A 36 ? ? -31.66 120.46 151 18 ALA A 49 ? ? -83.30 -70.76 152 18 ASN A 64 ? ? 46.42 26.43 153 18 GLU A 65 ? ? 73.33 34.95 154 18 ALA A 77 ? ? -36.01 -34.99 155 18 SER A 85 ? ? -48.58 -77.14 156 18 PRO A 97 ? ? -69.73 88.77 157 18 SER A 99 ? ? 35.04 50.31 158 19 ARG A 23 ? ? -35.47 107.18 159 19 SER A 36 ? ? -31.36 123.64 160 19 GLN A 41 ? ? -93.11 -61.57 161 19 GLU A 65 ? ? 46.16 28.10 162 19 ALA A 77 ? ? -32.88 -39.87 163 19 SER A 85 ? ? -39.84 -70.73 164 19 PRO A 97 ? ? -69.77 2.68 165 19 SER A 99 ? ? -47.71 108.31 166 20 CYS A 34 ? ? -178.54 126.57 167 20 SER A 36 ? ? -30.94 124.10 168 20 LEU A 57 ? ? 70.66 39.34 169 20 ALA A 77 ? ? -35.31 -36.49 170 20 SER A 85 ? ? -40.92 -75.62 #