HEADER TRANSFERASE 28-MAY-04 1WHU TITLE SOLUTION STRUCTURE OF THE ALPHA-HELICAL DOMAIN FROM MOUSE HYPOTHETICAL TITLE 2 PNPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYNUCLEOTIDE PHOSPHORYLASE; 3'-5' RNA EXONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALPHA-HELICAL DOMAIN; COMPND 5 SYNONYM: HYPOTHETICAL PNPASE; COMPND 6 EC: 2.7.7.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1200003F12; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P031222-56; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS POLYNUCLEOTIDE PHOSPHORYLASE, PNPASE, ALPHA-HELICAL DOMAIN, 3'-5' RNA KEYWDS 2 EXONUCLEASE, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WHU 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WHU 1 VERSN REVDAT 1 28-NOV-04 1WHU 0 JRNL AUTH T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE ALPHA-HELICAL DOMAIN FROM MOUSE JRNL TITL 2 HYPOTHETICAL PNPASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW 5.0.4, CYANA 2.0 REMARK 3 AUTHORS : JOHNSON (NMRVIEW), GUENTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WHU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023593. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.12MM PROTEIN U-15N, 13C; 20MM REMARK 210 D-TRIS-HCL; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0, NMRPIPE 2.3, KUJIRA REMARK 210 0.901 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 272 124.53 -174.99 REMARK 500 1 PRO A 274 2.83 -69.74 REMARK 500 1 PRO A 280 -168.95 -69.75 REMARK 500 1 ARG A 318 -32.74 -39.10 REMARK 500 1 LEU A 325 -61.14 -94.40 REMARK 500 1 GLU A 356 133.70 -175.14 REMARK 500 1 ARG A 363 155.91 -41.19 REMARK 500 2 GLU A 294 -70.37 -45.78 REMARK 500 2 VAL A 308 -25.94 -38.98 REMARK 500 2 ARG A 310 37.60 -92.05 REMARK 500 2 LEU A 325 -60.30 -94.18 REMARK 500 2 ASN A 342 -36.45 -35.72 REMARK 500 2 ASP A 364 141.49 -36.91 REMARK 500 3 ARG A 318 -32.89 -37.97 REMARK 500 3 CYS A 360 100.42 -46.36 REMARK 500 3 SER A 369 158.48 -47.88 REMARK 500 4 MET A 293 -71.14 -49.44 REMARK 500 4 ARG A 318 -33.67 -39.22 REMARK 500 4 GLU A 347 -34.99 -39.86 REMARK 500 4 ARG A 350 -28.30 -37.77 REMARK 500 4 TYR A 357 53.47 36.75 REMARK 500 5 ARG A 318 -39.66 -34.87 REMARK 500 5 CYS A 360 41.32 -102.10 REMARK 500 6 PRO A 274 -174.47 -69.74 REMARK 500 6 PRO A 280 -170.71 -69.79 REMARK 500 6 GLU A 294 -72.17 -46.87 REMARK 500 6 ASP A 306 129.85 -38.42 REMARK 500 6 ARG A 310 53.30 35.82 REMARK 500 6 ARG A 318 -30.87 -39.36 REMARK 500 6 ILE A 338 -71.40 -74.29 REMARK 500 6 GLU A 347 -70.57 -54.72 REMARK 500 6 TYR A 357 152.68 -44.61 REMARK 500 6 LYS A 358 126.83 -39.61 REMARK 500 6 SER A 365 -62.40 -94.73 REMARK 500 7 PRO A 274 -174.01 -69.78 REMARK 500 7 ASP A 302 -73.27 -47.78 REMARK 500 7 ARG A 318 -34.37 -36.56 REMARK 500 7 GLU A 347 -70.41 -67.63 REMARK 500 7 ARG A 359 115.92 -171.46 REMARK 500 7 SER A 368 100.21 -59.15 REMARK 500 8 PRO A 280 -174.06 -69.72 REMARK 500 8 GLU A 283 -33.26 -36.44 REMARK 500 8 LEU A 296 -38.55 -38.60 REMARK 500 8 ASP A 302 -71.91 -62.99 REMARK 500 8 ARG A 310 34.67 73.59 REMARK 500 8 ARG A 318 -39.10 -36.43 REMARK 500 8 LEU A 325 -60.06 -93.31 REMARK 500 8 GLU A 356 83.90 -61.27 REMARK 500 8 TYR A 357 109.25 -40.95 REMARK 500 8 PRO A 367 89.80 -69.80 REMARK 500 REMARK 500 THIS ENTRY HAS 154 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007006722.1 RELATED DB: TARGETDB DBREF 1WHU A 274 364 UNP Q8K1R3 PNPT1_MOUSE 273 363 SEQADV 1WHU GLY A 267 UNP Q8K1R3 CLONING ARTIFACT SEQADV 1WHU SER A 268 UNP Q8K1R3 CLONING ARTIFACT SEQADV 1WHU SER A 269 UNP Q8K1R3 CLONING ARTIFACT SEQADV 1WHU GLY A 270 UNP Q8K1R3 CLONING ARTIFACT SEQADV 1WHU SER A 271 UNP Q8K1R3 CLONING ARTIFACT SEQADV 1WHU SER A 272 UNP Q8K1R3 CLONING ARTIFACT SEQADV 1WHU GLY A 273 UNP Q8K1R3 CLONING ARTIFACT SEQADV 1WHU SER A 365 UNP Q8K1R3 CLONING ARTIFACT SEQADV 1WHU GLY A 366 UNP Q8K1R3 CLONING ARTIFACT SEQADV 1WHU PRO A 367 UNP Q8K1R3 CLONING ARTIFACT SEQADV 1WHU SER A 368 UNP Q8K1R3 CLONING ARTIFACT SEQADV 1WHU SER A 369 UNP Q8K1R3 CLONING ARTIFACT SEQADV 1WHU GLY A 370 UNP Q8K1R3 CLONING ARTIFACT SEQRES 1 A 104 GLY SER SER GLY SER SER GLY PRO GLN LYS ILE PHE THR SEQRES 2 A 104 PRO SER ALA GLU ILE VAL LYS TYR THR LYS ILE ILE ALA SEQRES 3 A 104 MET GLU LYS LEU TYR ALA VAL PHE THR ASP TYR GLU HIS SEQRES 4 A 104 ASP LYS VAL SER ARG ASP GLU ALA VAL ASN LYS ILE ARG SEQRES 5 A 104 LEU ASP THR GLU GLU HIS LEU LYS GLU LYS PHE PRO GLU SEQRES 6 A 104 VAL ASP GLN PHE GLU ILE ILE GLU SER PHE ASN ILE VAL SEQRES 7 A 104 ALA LYS GLU VAL PHE ARG SER ILE ILE LEU ASN GLU TYR SEQRES 8 A 104 LYS ARG CYS ASP GLY ARG ASP SER GLY PRO SER SER GLY HELIX 1 1 ALA A 282 PHE A 300 1 19 HELIX 2 2 SER A 309 LEU A 325 1 17 HELIX 3 3 GLN A 334 ILE A 353 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1