data_1WHV # _entry.id 1WHV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WHV pdb_00001whv 10.2210/pdb1whv/pdb RCSB RCSB023594 ? ? WWPDB D_1000023594 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt007011199.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WHV _pdbx_database_status.recvd_initial_deposition_date 2004-05-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nagata, T.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the RNA binding domain from hypothetical protein BAB23382' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nagata, T.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'poly(A)-specific ribonuclease' _entity.formula_weight 11013.168 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'deadenylation nuclease, hypothetical protein BAB23382' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQTY AEYVGKKQKGKQVKSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQTY AEYVGKKQKGKQVKSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt007011199.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLY n 1 9 PRO n 1 10 ASP n 1 11 LEU n 1 12 GLN n 1 13 PRO n 1 14 LYS n 1 15 ARG n 1 16 ASP n 1 17 HIS n 1 18 VAL n 1 19 LEU n 1 20 HIS n 1 21 VAL n 1 22 THR n 1 23 PHE n 1 24 PRO n 1 25 LYS n 1 26 GLU n 1 27 TRP n 1 28 LYS n 1 29 THR n 1 30 SER n 1 31 ASP n 1 32 LEU n 1 33 TYR n 1 34 GLN n 1 35 LEU n 1 36 PHE n 1 37 SER n 1 38 ALA n 1 39 PHE n 1 40 GLY n 1 41 ASN n 1 42 ILE n 1 43 GLN n 1 44 ILE n 1 45 SER n 1 46 TRP n 1 47 ILE n 1 48 ASP n 1 49 ASP n 1 50 THR n 1 51 SER n 1 52 ALA n 1 53 PHE n 1 54 VAL n 1 55 SER n 1 56 LEU n 1 57 SER n 1 58 GLN n 1 59 PRO n 1 60 GLU n 1 61 GLN n 1 62 VAL n 1 63 GLN n 1 64 ILE n 1 65 ALA n 1 66 VAL n 1 67 ASN n 1 68 THR n 1 69 SER n 1 70 LYS n 1 71 TYR n 1 72 ALA n 1 73 GLU n 1 74 SER n 1 75 TYR n 1 76 ARG n 1 77 ILE n 1 78 GLN n 1 79 THR n 1 80 TYR n 1 81 ALA n 1 82 GLU n 1 83 TYR n 1 84 VAL n 1 85 GLY n 1 86 LYS n 1 87 LYS n 1 88 GLN n 1 89 LYS n 1 90 GLY n 1 91 LYS n 1 92 GLN n 1 93 VAL n 1 94 LYS n 1 95 SER n 1 96 GLY n 1 97 PRO n 1 98 SER n 1 99 SER n 1 100 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'RIKEN CDNA 1200003I18' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P031020-39 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'CELL-FREE PROTEIN SYNTHESIS' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PARN_MOUSE _struct_ref.pdbx_db_accession Q8VDG3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKK QKGKQVK ; _struct_ref.pdbx_align_begin 430 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WHV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 94 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8VDG3 _struct_ref_seq.db_align_beg 430 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 516 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 430 _struct_ref_seq.pdbx_auth_seq_align_end 516 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WHV GLY A 1 ? UNP Q8VDG3 ? ? 'cloning artifact' 423 1 1 1WHV SER A 2 ? UNP Q8VDG3 ? ? 'cloning artifact' 424 2 1 1WHV SER A 3 ? UNP Q8VDG3 ? ? 'cloning artifact' 425 3 1 1WHV GLY A 4 ? UNP Q8VDG3 ? ? 'cloning artifact' 426 4 1 1WHV SER A 5 ? UNP Q8VDG3 ? ? 'cloning artifact' 427 5 1 1WHV SER A 6 ? UNP Q8VDG3 ? ? 'cloning artifact' 428 6 1 1WHV GLY A 7 ? UNP Q8VDG3 ? ? 'cloning artifact' 429 7 1 1WHV SER A 95 ? UNP Q8VDG3 ? ? 'cloning artifact' 517 8 1 1WHV GLY A 96 ? UNP Q8VDG3 ? ? 'cloning artifact' 518 9 1 1WHV PRO A 97 ? UNP Q8VDG3 ? ? 'cloning artifact' 519 10 1 1WHV SER A 98 ? UNP Q8VDG3 ? ? 'cloning artifact' 520 11 1 1WHV SER A 99 ? UNP Q8VDG3 ? ? 'cloning artifact' 521 12 1 1WHV GLY A 100 ? UNP Q8VDG3 ? ? 'cloning artifact' 522 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.94mM PROTEIN U-15N, 13C; 20mM phosphate buffer NA; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 800 # _pdbx_nmr_refine.entry_id 1WHV _pdbx_nmr_refine.method 'torsion angle dynamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1WHV _pdbx_nmr_details.text 'The structure was determined using triple-resonance NMR spectroscopy.' # _pdbx_nmr_ensemble.entry_id 1WHV _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1WHV _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal NMRView 5.0.4 'data analysis' Johnson 1 CYANA 2.0 'structure solution' Guentert 2 NMRPipe 2.3 processing Delaglio 3 KUJIRA 0.901 'data analysis' 'Kobayashi, N.' 4 CYANA 2.0 refinement Guentert 5 # _exptl.entry_id 1WHV _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1WHV _struct.title 'Solution structure of the RNA binding domain from hypothetical protein BAB23382' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WHV _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;RNA recognition motif, RRM, RNA binding domain, RBD, RNP, poly(A)-specific ribonuclease, PARN, STRUCTURAL GENOMICS, RIKEN Structural Genomics/Proteomics Initiative, RSGI, HYDROLASE ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 29 ? PHE A 36 ? THR A 451 PHE A 458 1 ? 8 HELX_P HELX_P2 2 PRO A 59 ? TYR A 71 ? PRO A 481 TYR A 493 1 ? 13 HELX_P HELX_P3 3 TYR A 80 ? LYS A 87 ? TYR A 502 LYS A 509 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 43 ? TRP A 46 ? GLN A 465 TRP A 468 A 2 ALA A 52 ? SER A 55 ? ALA A 474 SER A 477 A 3 VAL A 18 ? THR A 22 ? VAL A 440 THR A 444 A 4 ARG A 76 ? THR A 79 ? ARG A 498 THR A 501 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 45 ? N SER A 467 O PHE A 53 ? O PHE A 475 A 2 3 O VAL A 54 ? O VAL A 476 N LEU A 19 ? N LEU A 441 A 3 4 N HIS A 20 ? N HIS A 442 O GLN A 78 ? O GLN A 500 # _database_PDB_matrix.entry_id 1WHV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WHV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 423 423 GLY GLY A . n A 1 2 SER 2 424 424 SER SER A . n A 1 3 SER 3 425 425 SER SER A . n A 1 4 GLY 4 426 426 GLY GLY A . n A 1 5 SER 5 427 427 SER SER A . n A 1 6 SER 6 428 428 SER SER A . n A 1 7 GLY 7 429 429 GLY GLY A . n A 1 8 GLY 8 430 430 GLY GLY A . n A 1 9 PRO 9 431 431 PRO PRO A . n A 1 10 ASP 10 432 432 ASP ASP A . n A 1 11 LEU 11 433 433 LEU LEU A . n A 1 12 GLN 12 434 434 GLN GLN A . n A 1 13 PRO 13 435 435 PRO PRO A . n A 1 14 LYS 14 436 436 LYS LYS A . n A 1 15 ARG 15 437 437 ARG ARG A . n A 1 16 ASP 16 438 438 ASP ASP A . n A 1 17 HIS 17 439 439 HIS HIS A . n A 1 18 VAL 18 440 440 VAL VAL A . n A 1 19 LEU 19 441 441 LEU LEU A . n A 1 20 HIS 20 442 442 HIS HIS A . n A 1 21 VAL 21 443 443 VAL VAL A . n A 1 22 THR 22 444 444 THR THR A . n A 1 23 PHE 23 445 445 PHE PHE A . n A 1 24 PRO 24 446 446 PRO PRO A . n A 1 25 LYS 25 447 447 LYS LYS A . n A 1 26 GLU 26 448 448 GLU GLU A . n A 1 27 TRP 27 449 449 TRP TRP A . n A 1 28 LYS 28 450 450 LYS LYS A . n A 1 29 THR 29 451 451 THR THR A . n A 1 30 SER 30 452 452 SER SER A . n A 1 31 ASP 31 453 453 ASP ASP A . n A 1 32 LEU 32 454 454 LEU LEU A . n A 1 33 TYR 33 455 455 TYR TYR A . n A 1 34 GLN 34 456 456 GLN GLN A . n A 1 35 LEU 35 457 457 LEU LEU A . n A 1 36 PHE 36 458 458 PHE PHE A . n A 1 37 SER 37 459 459 SER SER A . n A 1 38 ALA 38 460 460 ALA ALA A . n A 1 39 PHE 39 461 461 PHE PHE A . n A 1 40 GLY 40 462 462 GLY GLY A . n A 1 41 ASN 41 463 463 ASN ASN A . n A 1 42 ILE 42 464 464 ILE ILE A . n A 1 43 GLN 43 465 465 GLN GLN A . n A 1 44 ILE 44 466 466 ILE ILE A . n A 1 45 SER 45 467 467 SER SER A . n A 1 46 TRP 46 468 468 TRP TRP A . n A 1 47 ILE 47 469 469 ILE ILE A . n A 1 48 ASP 48 470 470 ASP ASP A . n A 1 49 ASP 49 471 471 ASP ASP A . n A 1 50 THR 50 472 472 THR THR A . n A 1 51 SER 51 473 473 SER SER A . n A 1 52 ALA 52 474 474 ALA ALA A . n A 1 53 PHE 53 475 475 PHE PHE A . n A 1 54 VAL 54 476 476 VAL VAL A . n A 1 55 SER 55 477 477 SER SER A . n A 1 56 LEU 56 478 478 LEU LEU A . n A 1 57 SER 57 479 479 SER SER A . n A 1 58 GLN 58 480 480 GLN GLN A . n A 1 59 PRO 59 481 481 PRO PRO A . n A 1 60 GLU 60 482 482 GLU GLU A . n A 1 61 GLN 61 483 483 GLN GLN A . n A 1 62 VAL 62 484 484 VAL VAL A . n A 1 63 GLN 63 485 485 GLN GLN A . n A 1 64 ILE 64 486 486 ILE ILE A . n A 1 65 ALA 65 487 487 ALA ALA A . n A 1 66 VAL 66 488 488 VAL VAL A . n A 1 67 ASN 67 489 489 ASN ASN A . n A 1 68 THR 68 490 490 THR THR A . n A 1 69 SER 69 491 491 SER SER A . n A 1 70 LYS 70 492 492 LYS LYS A . n A 1 71 TYR 71 493 493 TYR TYR A . n A 1 72 ALA 72 494 494 ALA ALA A . n A 1 73 GLU 73 495 495 GLU GLU A . n A 1 74 SER 74 496 496 SER SER A . n A 1 75 TYR 75 497 497 TYR TYR A . n A 1 76 ARG 76 498 498 ARG ARG A . n A 1 77 ILE 77 499 499 ILE ILE A . n A 1 78 GLN 78 500 500 GLN GLN A . n A 1 79 THR 79 501 501 THR THR A . n A 1 80 TYR 80 502 502 TYR TYR A . n A 1 81 ALA 81 503 503 ALA ALA A . n A 1 82 GLU 82 504 504 GLU GLU A . n A 1 83 TYR 83 505 505 TYR TYR A . n A 1 84 VAL 84 506 506 VAL VAL A . n A 1 85 GLY 85 507 507 GLY GLY A . n A 1 86 LYS 86 508 508 LYS LYS A . n A 1 87 LYS 87 509 509 LYS LYS A . n A 1 88 GLN 88 510 510 GLN GLN A . n A 1 89 LYS 89 511 511 LYS LYS A . n A 1 90 GLY 90 512 512 GLY GLY A . n A 1 91 LYS 91 513 513 LYS LYS A . n A 1 92 GLN 92 514 514 GLN GLN A . n A 1 93 VAL 93 515 515 VAL VAL A . n A 1 94 LYS 94 516 516 LYS LYS A . n A 1 95 SER 95 517 517 SER SER A . n A 1 96 GLY 96 518 518 GLY GLY A . n A 1 97 PRO 97 519 519 PRO PRO A . n A 1 98 SER 98 520 520 SER SER A . n A 1 99 SER 99 521 521 SER SER A . n A 1 100 GLY 100 522 522 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 449 ? ? -66.60 -175.31 2 1 ILE A 469 ? ? -90.60 -66.20 3 1 VAL A 515 ? ? -39.41 141.96 4 1 SER A 521 ? ? -39.21 108.32 5 2 ASP A 432 ? ? -54.32 177.21 6 2 LYS A 436 ? ? -165.00 106.15 7 2 GLU A 448 ? ? -36.77 -37.22 8 2 TRP A 449 ? ? -55.25 172.80 9 2 GLN A 514 ? ? -174.02 132.02 10 2 SER A 520 ? ? -163.09 115.96 11 3 PRO A 431 ? ? -69.78 1.49 12 3 LYS A 436 ? ? -96.97 41.32 13 3 ARG A 437 ? ? -64.73 78.02 14 3 TRP A 449 ? ? -65.66 -178.08 15 3 SER A 459 ? ? -36.16 -31.77 16 3 THR A 472 ? ? -132.14 -33.02 17 3 VAL A 515 ? ? -48.45 164.02 18 4 SER A 425 ? ? -96.59 -60.64 19 4 PRO A 431 ? ? -69.76 1.48 20 4 LEU A 433 ? ? -47.00 159.03 21 4 PRO A 435 ? ? -69.73 -175.29 22 4 LYS A 436 ? ? -35.91 150.57 23 4 TRP A 449 ? ? -50.35 179.37 24 4 SER A 459 ? ? -38.25 -33.30 25 4 ILE A 469 ? ? -90.87 -64.27 26 4 TYR A 505 ? ? -83.89 -75.00 27 4 LYS A 509 ? ? -55.14 -71.10 28 4 LYS A 513 ? ? -168.33 110.40 29 4 LYS A 516 ? ? -58.72 92.39 30 4 SER A 520 ? ? -173.11 113.21 31 5 GLN A 514 ? ? -171.65 134.55 32 6 LYS A 436 ? ? -84.12 47.64 33 6 ARG A 437 ? ? -87.53 41.03 34 6 TRP A 449 ? ? -68.76 -176.31 35 6 ALA A 460 ? ? -36.28 -36.19 36 6 ILE A 469 ? ? -90.70 -64.20 37 6 LYS A 509 ? ? -40.87 -72.17 38 6 LYS A 513 ? ? -173.70 110.02 39 6 SER A 520 ? ? -170.38 124.29 40 7 LEU A 433 ? ? -51.29 173.01 41 7 GLN A 434 ? ? -35.93 144.11 42 7 TRP A 449 ? ? -69.26 -176.54 43 7 ILE A 469 ? ? -90.54 -70.57 44 7 LYS A 513 ? ? -168.25 116.70 45 8 SER A 425 ? ? -171.87 133.62 46 8 THR A 472 ? ? -131.97 -38.07 47 8 GLN A 510 ? ? -54.75 173.74 48 8 PRO A 519 ? ? -69.72 94.17 49 9 SER A 428 ? ? -52.01 176.98 50 9 LEU A 433 ? ? -59.88 86.38 51 9 PRO A 435 ? ? -69.77 -178.52 52 9 TRP A 449 ? ? -52.43 -179.33 53 9 ALA A 460 ? ? -33.89 -39.03 54 9 THR A 472 ? ? -132.20 -41.63 55 10 LEU A 433 ? ? -58.62 89.41 56 10 PRO A 435 ? ? -69.83 -174.85 57 10 TRP A 449 ? ? -66.54 -174.87 58 10 ILE A 469 ? ? -90.46 -70.75 59 11 LEU A 433 ? ? -51.94 97.32 60 11 GLN A 434 ? ? -41.33 151.55 61 11 PRO A 435 ? ? -69.81 -179.19 62 11 LYS A 436 ? ? -101.33 42.37 63 11 ARG A 437 ? ? -110.29 74.89 64 11 TRP A 449 ? ? -69.61 -175.30 65 11 LYS A 511 ? ? -81.26 42.44 66 11 SER A 520 ? ? -34.66 138.95 67 12 PRO A 431 ? ? -69.76 1.47 68 12 LYS A 513 ? ? -174.91 116.89 69 12 LYS A 516 ? ? -171.42 120.43 70 12 PRO A 519 ? ? -69.77 -174.11 71 13 PRO A 431 ? ? -69.77 1.55 72 13 PRO A 435 ? ? -69.77 -174.51 73 13 LYS A 436 ? ? -34.93 146.41 74 13 THR A 451 ? ? -37.51 -28.36 75 13 ALA A 460 ? ? -34.03 -39.23 76 13 ILE A 469 ? ? -89.95 -70.61 77 13 LYS A 511 ? ? -65.73 86.94 78 13 LYS A 516 ? ? -38.18 126.62 79 14 PRO A 431 ? ? -69.78 1.53 80 14 LEU A 433 ? ? -61.12 92.17 81 14 LYS A 436 ? ? -94.45 38.14 82 14 GLU A 448 ? ? -38.72 -32.28 83 14 TRP A 449 ? ? -61.66 -179.31 84 14 ILE A 469 ? ? -90.25 -70.34 85 14 GLN A 485 ? ? -48.66 -70.09 86 14 LYS A 511 ? ? -173.48 128.51 87 14 LYS A 513 ? ? -171.92 109.85 88 14 VAL A 515 ? ? -37.52 142.78 89 14 PRO A 519 ? ? -69.70 2.28 90 15 LYS A 436 ? ? -92.29 42.39 91 15 ARG A 437 ? ? -112.89 52.53 92 15 TYR A 455 ? ? -49.81 -71.19 93 15 ILE A 469 ? ? -90.94 -70.65 94 15 LYS A 511 ? ? -173.22 112.23 95 15 SER A 520 ? ? -34.74 146.75 96 15 SER A 521 ? ? -50.92 -179.92 97 16 ASP A 432 ? ? -36.22 125.80 98 16 LYS A 436 ? ? -173.33 129.11 99 16 LYS A 447 ? ? -37.82 -27.65 100 16 LYS A 513 ? ? -170.37 112.11 101 16 LYS A 516 ? ? -174.14 141.80 102 17 LYS A 436 ? ? -35.80 145.59 103 17 ARG A 437 ? ? -67.63 90.16 104 17 GLU A 448 ? ? -37.67 -37.37 105 17 TRP A 449 ? ? -54.53 -176.30 106 17 SER A 459 ? ? -39.24 -34.97 107 17 LYS A 511 ? ? -170.45 116.81 108 17 GLN A 514 ? ? -173.49 136.46 109 18 ARG A 437 ? ? -106.12 78.58 110 18 GLU A 448 ? ? -37.48 -30.00 111 18 TRP A 449 ? ? -63.71 -176.11 112 18 GLN A 510 ? ? -55.32 176.98 113 19 PRO A 431 ? ? -69.72 1.10 114 19 ALA A 460 ? ? -34.10 -39.41 115 19 ILE A 469 ? ? -90.34 -70.54 116 19 ASN A 489 ? ? -35.48 -32.85 117 19 GLN A 514 ? ? -171.24 131.53 118 20 PRO A 431 ? ? -69.81 1.42 119 20 LEU A 433 ? ? -51.86 172.59 120 20 SER A 459 ? ? -37.86 -37.05 121 20 ILE A 469 ? ? -91.02 -70.56 122 20 GLN A 510 ? ? -64.11 97.12 123 20 LYS A 511 ? ? -169.34 117.05 124 20 GLN A 514 ? ? -173.49 124.10 #