HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-MAY-04 1WI2 TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN FROM RIKEN CDNA 2700099C19 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIKEN CDNA 2700099C19; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 2700099C19; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030203-31; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 2 RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SEIMIYA,T.TOMIZAWA,T.KIGAWA,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WI2 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WI2 1 VERSN REVDAT 1 28-NOV-04 1WI2 0 JRNL AUTH K.SEIMIYA,T.TOMIZAWA,T.KIGAWA,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PDZ DOMAIN FROM RIKEN CDNA JRNL TITL 2 2700099C19 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WI2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023601. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.41MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM PHOSPHATE BUFFER; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 2002045, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.8996, REMARK 210 CYANA 1.0.7 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 30 H ILE A 49 1.50 REMARK 500 O SER A 79 H GLU A 83 1.55 REMARK 500 H VAL A 68 O VAL A 71 1.55 REMARK 500 O ASP A 53 H ALA A 57 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 10 84.50 -159.53 REMARK 500 1 GLN A 13 -63.34 -147.41 REMARK 500 1 PHE A 14 26.24 -161.16 REMARK 500 1 LYS A 23 112.11 57.30 REMARK 500 1 GLN A 28 73.08 -150.95 REMARK 500 1 LEU A 29 -82.33 59.80 REMARK 500 1 LYS A 37 -57.07 -145.46 REMARK 500 1 ALA A 38 -45.96 -161.51 REMARK 500 1 SER A 39 -73.31 -50.11 REMARK 500 1 GLN A 40 -58.92 177.25 REMARK 500 1 LEU A 41 -158.29 40.44 REMARK 500 1 ASP A 51 49.66 157.64 REMARK 500 1 GLU A 61 99.87 -46.46 REMARK 500 1 ASP A 63 98.01 -52.50 REMARK 500 1 ASP A 70 -50.38 83.47 REMARK 500 1 LYS A 86 -75.14 -53.43 REMARK 500 1 SER A 92 72.73 -155.58 REMARK 500 1 SER A 102 95.95 52.97 REMARK 500 2 SER A 2 108.55 -165.74 REMARK 500 2 GLN A 13 -45.06 -157.50 REMARK 500 2 PHE A 14 34.81 -150.57 REMARK 500 2 ALA A 27 -169.56 -117.37 REMARK 500 2 LEU A 29 -80.01 -39.47 REMARK 500 2 ALA A 38 -65.48 -155.46 REMARK 500 2 SER A 39 -90.73 -38.40 REMARK 500 2 GLN A 40 -70.07 -148.15 REMARK 500 2 LEU A 41 -161.87 41.70 REMARK 500 2 ASP A 51 45.88 155.66 REMARK 500 2 LYS A 86 -73.07 -47.82 REMARK 500 2 ALA A 88 106.12 -42.85 REMARK 500 2 PHE A 98 60.53 -109.04 REMARK 500 2 SER A 99 -36.96 179.92 REMARK 500 3 SER A 5 105.77 58.38 REMARK 500 3 GLU A 10 75.13 -101.27 REMARK 500 3 GLN A 13 -44.52 -155.06 REMARK 500 3 PHE A 14 50.32 -156.07 REMARK 500 3 LEU A 15 158.08 -47.39 REMARK 500 3 PRO A 16 -167.71 -74.92 REMARK 500 3 LYS A 23 110.53 57.36 REMARK 500 3 GLN A 28 69.35 -154.78 REMARK 500 3 LEU A 29 -81.56 61.02 REMARK 500 3 LYS A 37 -74.82 -166.24 REMARK 500 3 ALA A 38 -60.40 -123.91 REMARK 500 3 SER A 39 -84.74 -47.49 REMARK 500 3 GLN A 40 -62.33 -175.79 REMARK 500 3 LEU A 41 -156.07 44.97 REMARK 500 3 ILE A 45 90.30 -69.25 REMARK 500 3 ASP A 51 42.89 163.71 REMARK 500 3 GLU A 61 100.85 -50.17 REMARK 500 3 ASP A 70 -51.45 82.51 REMARK 500 REMARK 500 THIS ENTRY HAS 380 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007003102.1 RELATED DB: TARGETDB DBREF 1WI2 A 8 98 UNP Q9CZG9 PDK11_MOUSE 37 127 SEQADV 1WI2 GLY A 1 UNP Q9CZG9 CLONING ARTIFACT SEQADV 1WI2 SER A 2 UNP Q9CZG9 CLONING ARTIFACT SEQADV 1WI2 SER A 3 UNP Q9CZG9 CLONING ARTIFACT SEQADV 1WI2 GLY A 4 UNP Q9CZG9 CLONING ARTIFACT SEQADV 1WI2 SER A 5 UNP Q9CZG9 CLONING ARTIFACT SEQADV 1WI2 SER A 6 UNP Q9CZG9 CLONING ARTIFACT SEQADV 1WI2 GLY A 7 UNP Q9CZG9 CLONING ARTIFACT SEQADV 1WI2 SER A 99 UNP Q9CZG9 CLONING ARTIFACT SEQADV 1WI2 GLY A 100 UNP Q9CZG9 CLONING ARTIFACT SEQADV 1WI2 PRO A 101 UNP Q9CZG9 CLONING ARTIFACT SEQADV 1WI2 SER A 102 UNP Q9CZG9 CLONING ARTIFACT SEQADV 1WI2 SER A 103 UNP Q9CZG9 CLONING ARTIFACT SEQADV 1WI2 GLY A 104 UNP Q9CZG9 CLONING ARTIFACT SEQRES 1 A 104 GLY SER SER GLY SER SER GLY ASN ASN GLU LEU THR GLN SEQRES 2 A 104 PHE LEU PRO ARG ILE VAL THR LEU LYS LYS PRO PRO GLY SEQRES 3 A 104 ALA GLN LEU GLY PHE ASN ILE ARG GLY GLY LYS ALA SER SEQRES 4 A 104 GLN LEU GLY ILE PHE ILE SER LYS VAL ILE PRO ASP SER SEQRES 5 A 104 ASP ALA HIS ARG ALA GLY LEU GLN GLU GLY ASP GLN VAL SEQRES 6 A 104 LEU ALA VAL ASN ASP VAL ASP PHE GLN ASP ILE GLU HIS SEQRES 7 A 104 SER LYS ALA VAL GLU ILE LEU LYS THR ALA ARG GLU ILE SEQRES 8 A 104 SER MET ARG VAL ARG PHE PHE SER GLY PRO SER SER GLY HELIX 1 1 SER A 52 GLY A 58 1 7 HELIX 2 2 GLU A 77 ALA A 88 1 12 SHEET 1 A 4 ARG A 17 LEU A 21 0 SHEET 2 A 4 ILE A 91 ARG A 96 -1 O VAL A 95 N ARG A 17 SHEET 3 A 4 GLN A 64 VAL A 68 -1 N LEU A 66 O ARG A 94 SHEET 4 A 4 VAL A 71 ASP A 72 -1 O VAL A 71 N VAL A 68 SHEET 1 B 2 PHE A 31 ARG A 34 0 SHEET 2 B 2 PHE A 44 VAL A 48 -1 O LYS A 47 N ASN A 32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1