HEADER DNA BINDING PROTEIN 28-MAY-04 1WIJ TITLE SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF ETHYLENE-INSENSITIVE3- TITLE 2 LIKE3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ETHYLENE-INSENSITIVE3-LIKE 3 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN; COMPND 5 SYNONYM: TRANSCRIPTION FACTOR EIL3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: EIL3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PCR2.1; SOURCE 8 OTHER_DETAILS: CELL-FREE SYNTHESIS KEYWDS DNA-BINDING DOMAIN, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.YAMASAKI,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 02-MAR-22 1WIJ 1 REMARK SEQADV REVDAT 4 24-FEB-09 1WIJ 1 VERSN REVDAT 3 05-JUL-05 1WIJ 1 JRNL REVDAT 2 21-DEC-04 1WIJ 1 JRNL REVDAT 1 28-NOV-04 1WIJ 0 JRNL AUTH K.YAMASAKI,T.KIGAWA,M.INOUE,T.YAMASAKI,T.YABUKI,M.AOKI, JRNL AUTH 2 E.SEKI,T.MATSUDA,Y.TOMO,T.TERADA,M.SHIROUZU,A.TANAKA,M.SEKI, JRNL AUTH 3 K.SHINOZAKI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE MAJOR DNA-BINDING DOMAIN OF JRNL TITL 2 ARABIDOPSIS THALIANA ETHYLENE-INSENSITIVE3-LIKE3. JRNL REF J.MOL.BIOL. V. 348 253 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15811366 JRNL DOI 10.1016/J.JMB.2005.02.065 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 2000, CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WIJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023618. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 200MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM EIL3-DBD; 20MM KPI; 200MM REMARK 210 KCL; 95% H2O; 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; DQF-COSY; HMQC-J REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 17 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 155 REMARK 465 SER A 156 REMARK 465 SER A 157 REMARK 465 GLY A 158 REMARK 465 SER A 159 REMARK 465 SER A 160 REMARK 465 GLY A 161 REMARK 465 SER A 289 REMARK 465 GLY A 290 REMARK 465 PRO A 291 REMARK 465 SER A 292 REMARK 465 SER A 293 REMARK 465 GLY A 294 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 182 63.30 -107.77 REMARK 500 1 GLN A 183 -38.26 -170.08 REMARK 500 1 GLN A 189 43.81 -90.39 REMARK 500 1 PRO A 193 170.96 -46.38 REMARK 500 1 LYS A 196 -63.63 -90.24 REMARK 500 1 TRP A 202 74.94 -170.22 REMARK 500 1 ASN A 207 33.71 -164.77 REMARK 500 1 PRO A 217 103.49 -52.08 REMARK 500 1 GLN A 220 53.96 -152.20 REMARK 500 1 PRO A 223 -176.71 -64.75 REMARK 500 1 ARG A 225 -167.17 -125.99 REMARK 500 1 ASP A 229 38.68 -96.84 REMARK 500 1 ASP A 249 65.64 -115.39 REMARK 500 1 SER A 260 173.93 -59.73 REMARK 500 1 LEU A 263 -43.48 -153.44 REMARK 500 1 ALA A 269 -55.22 -172.67 REMARK 500 1 GLN A 287 -78.06 -71.37 REMARK 500 2 GLN A 183 -42.29 -170.15 REMARK 500 2 GLN A 189 30.88 -90.40 REMARK 500 2 LYS A 191 31.27 -163.33 REMARK 500 2 PRO A 193 171.35 -46.11 REMARK 500 2 LYS A 196 -68.78 -90.27 REMARK 500 2 TRP A 202 72.40 -170.70 REMARK 500 2 ASN A 207 51.47 -145.94 REMARK 500 2 GLN A 220 57.78 -152.23 REMARK 500 2 PRO A 223 -178.65 -60.76 REMARK 500 2 ASP A 249 57.50 -103.86 REMARK 500 2 MET A 267 46.48 -108.83 REMARK 500 2 ALA A 269 -166.21 -173.61 REMARK 500 2 ILE A 286 -67.53 -90.01 REMARK 500 3 GLN A 163 101.48 60.58 REMARK 500 3 PRO A 188 -178.71 -53.26 REMARK 500 3 ARG A 190 50.72 -90.05 REMARK 500 3 LYS A 191 -45.33 -147.51 REMARK 500 3 PRO A 193 -178.60 -50.73 REMARK 500 3 TRP A 202 77.12 -170.35 REMARK 500 3 ASN A 207 65.50 -105.20 REMARK 500 3 GLN A 220 56.20 -151.65 REMARK 500 3 PRO A 223 173.29 -58.30 REMARK 500 3 ASP A 249 57.96 -111.47 REMARK 500 3 CYS A 262 -39.11 -177.80 REMARK 500 3 ASP A 265 -43.58 -166.49 REMARK 500 3 LYS A 266 31.23 -153.04 REMARK 500 3 MET A 267 30.67 -98.71 REMARK 500 3 ALA A 269 -167.94 -105.95 REMARK 500 4 PRO A 193 -166.25 -56.12 REMARK 500 4 LEU A 194 -54.69 -127.12 REMARK 500 4 TRP A 202 75.63 -170.58 REMARK 500 4 ASN A 207 42.71 -170.03 REMARK 500 4 GLN A 220 54.99 -143.53 REMARK 500 REMARK 500 THIS ENTRY HAS 252 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ATR001003609.1 RELATED DB: TARGETDB DBREF 1WIJ A 162 288 UNP O23116 EIL3_ARATH 162 288 SEQADV 1WIJ GLY A 155 UNP O23116 CLONING ARTIFACT SEQADV 1WIJ SER A 156 UNP O23116 CLONING ARTIFACT SEQADV 1WIJ SER A 157 UNP O23116 CLONING ARTIFACT SEQADV 1WIJ GLY A 158 UNP O23116 CLONING ARTIFACT SEQADV 1WIJ SER A 159 UNP O23116 CLONING ARTIFACT SEQADV 1WIJ SER A 160 UNP O23116 CLONING ARTIFACT SEQADV 1WIJ GLY A 161 UNP O23116 CLONING ARTIFACT SEQADV 1WIJ SER A 289 UNP O23116 CLONING ARTIFACT SEQADV 1WIJ GLY A 290 UNP O23116 CLONING ARTIFACT SEQADV 1WIJ PRO A 291 UNP O23116 CLONING ARTIFACT SEQADV 1WIJ SER A 292 UNP O23116 CLONING ARTIFACT SEQADV 1WIJ SER A 293 UNP O23116 CLONING ARTIFACT SEQADV 1WIJ GLY A 294 UNP O23116 CLONING ARTIFACT SEQRES 1 A 140 GLY SER SER GLY SER SER GLY SER GLN PHE VAL LEU GLN SEQRES 2 A 140 ASP LEU GLN ASP ALA THR LEU GLY SER LEU LEU SER SER SEQRES 3 A 140 LEU MET GLN HIS CYS ASP PRO PRO GLN ARG LYS TYR PRO SEQRES 4 A 140 LEU GLU LYS GLY THR PRO PRO PRO TRP TRP PRO THR GLY SEQRES 5 A 140 ASN GLU GLU TRP TRP VAL LYS LEU GLY LEU PRO LYS SER SEQRES 6 A 140 GLN SER PRO PRO TYR ARG LYS PRO HIS ASP LEU LYS LYS SEQRES 7 A 140 MET TRP LYS VAL GLY VAL LEU THR ALA VAL ILE ASN HIS SEQRES 8 A 140 MET LEU PRO ASP ILE ALA LYS ILE LYS ARG HIS VAL ARG SEQRES 9 A 140 GLN SER LYS CYS LEU GLN ASP LYS MET THR ALA LYS GLU SEQRES 10 A 140 SER ALA ILE TRP LEU ALA VAL LEU ASN GLN GLU GLU SER SEQRES 11 A 140 LEU ILE GLN GLN SER GLY PRO SER SER GLY HELIX 1 1 GLN A 170 MET A 182 1 13 HELIX 2 2 THR A 198 TRP A 203 1 6 HELIX 3 3 GLU A 208 GLY A 215 1 8 HELIX 4 4 LYS A 226 LEU A 230 5 5 HELIX 5 5 LYS A 231 MET A 246 1 16 HELIX 6 6 ASP A 249 HIS A 256 1 8 HELIX 7 7 ALA A 269 ASN A 280 1 12 CISPEP 1 ASP A 186 PRO A 187 1 0.00 CISPEP 2 ASP A 186 PRO A 187 2 -0.05 CISPEP 3 ASP A 186 PRO A 187 3 -0.12 CISPEP 4 ASP A 186 PRO A 187 4 -0.02 CISPEP 5 ASP A 186 PRO A 187 5 0.31 CISPEP 6 ASP A 186 PRO A 187 6 0.11 CISPEP 7 ASP A 186 PRO A 187 7 0.02 CISPEP 8 ASP A 186 PRO A 187 8 -0.08 CISPEP 9 ASP A 186 PRO A 187 9 0.12 CISPEP 10 ASP A 186 PRO A 187 10 0.03 CISPEP 11 ASP A 186 PRO A 187 11 -0.04 CISPEP 12 ASP A 186 PRO A 187 12 -0.07 CISPEP 13 ASP A 186 PRO A 187 13 -0.11 CISPEP 14 ASP A 186 PRO A 187 14 0.17 CISPEP 15 ASP A 186 PRO A 187 15 0.11 CISPEP 16 ASP A 186 PRO A 187 16 0.12 CISPEP 17 ASP A 186 PRO A 187 17 0.05 CISPEP 18 ASP A 186 PRO A 187 18 0.13 CISPEP 19 ASP A 186 PRO A 187 19 0.02 CISPEP 20 ASP A 186 PRO A 187 20 -0.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1