HEADER LIGASE 30-MAY-04 1WK8 TITLE ISOLEUCYL-TRNA SYNTHETASE EDITING DOMAIN COMPLEXED WITH THE PRE- TITLE 2 TRANSFER EDITING SUBSTRATE ANALOGUE, VAL-AMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOLEUCYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CP1 DOMAIN; COMPND 5 SYNONYM: ISOLEUCINE--TRNA LIGASE, ILERS, FRAGMENT; COMPND 6 EC: 6.1.1.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: ILES; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS EDITING, CP1, ISOLEUCYL-TRNA SYNTHETASE, FIDELITY, THERMUS KEYWDS 2 THERMOPHILUS, TRANSLATION, AMINO ACID, STRUCTURAL GENOMICS, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, NPPSFA, NATIONAL KEYWDS 4 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.FUKUNAGA,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 2 (RSGI) REVDAT 4 25-OCT-23 1WK8 1 REMARK SEQADV REVDAT 3 24-FEB-09 1WK8 1 VERSN REVDAT 2 05-SEP-06 1WK8 1 TITLE JRNL KEYWDS REVDAT 1 27-SEP-05 1WK8 0 JRNL AUTH R.FUKUNAGA,S.YOKOYAMA JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION BY THE EDITING JRNL TITL 2 DOMAIN OF ISOLEUCYL-TRNA SYNTHETASE JRNL REF J.MOL.BIOL. V. 359 901 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16697013 JRNL DOI 10.1016/J.JMB.2006.04.025 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1816280.050 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 49525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2512 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7665 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 424 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2901 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 274 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75000 REMARK 3 B22 (A**2) : -0.75000 REMARK 3 B33 (A**2) : 1.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.020 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.930 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 7.960 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 10.400; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 71.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : VALAMS_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : VALAMS_REP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WK8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49525 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1UDZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM ADA (PH6.7), 2M AMMNIUM SULPHATE, REMARK 280 5% 2-PROPANOL, 5MM 5'O-[N-(L-VALYL)SULPHAMOYL]ADENOSINE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.44150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.99900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.99900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.22075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.99900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.99900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.66225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.99900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.99900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.22075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.99900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.99900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.66225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.44150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1066 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 195 REMARK 465 GLY A 196 REMARK 465 TYR A 197 REMARK 465 LYS A 198 REMARK 465 GLU A 199 REMARK 465 ILE A 200 REMARK 465 LEU A 383 REMARK 465 HIS A 384 REMARK 465 SER A 385 REMARK 465 TYR A 386 REMARK 465 PRO A 387 REMARK 465 HIS A 388 REMARK 465 MET B 195 REMARK 465 GLY B 196 REMARK 465 TYR B 197 REMARK 465 LYS B 198 REMARK 465 GLU B 199 REMARK 465 ILE B 200 REMARK 465 GLN B 201 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 444 O HOH A 502 2.14 REMARK 500 OG1 THR B 228 OAZ VMS B 999 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 555 O HOH A 555 7645 1.86 REMARK 500 O HOH A 421 O HOH A 467 4564 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 371 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 202 128.27 -36.25 REMARK 500 GLU B 213 73.85 -153.86 REMARK 500 LYS B 216 3.36 -55.30 REMARK 500 GLU B 220 -64.79 -101.30 REMARK 500 LEU B 340 81.02 49.22 REMARK 500 PRO B 353 33.79 -97.80 REMARK 500 LEU B 383 -128.36 -62.37 REMARK 500 HIS B 384 -29.35 71.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VMS B 999 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000883.3 RELATED DB: TARGETDB DBREF 1WK8 A 196 388 UNP P56690 SYI_THET8 196 388 DBREF 1WK8 B 196 388 UNP P56690 SYI_THET8 196 388 SEQADV 1WK8 MET A 195 UNP P56690 INITIATING METHIONINE SEQADV 1WK8 PRO A 274 UNP P56690 GLN 274 SEE REMARK 999 SEQADV 1WK8 MET B 195 UNP P56690 INITIATING METHIONINE SEQADV 1WK8 PRO B 274 UNP P56690 GLN 274 SEE REMARK 999 SEQRES 1 A 194 MET GLY TYR LYS GLU ILE GLN ASP PRO SER VAL TYR VAL SEQRES 2 A 194 ARG PHE PRO LEU LYS GLU PRO LYS LYS LEU GLY LEU GLU SEQRES 3 A 194 LYS ALA SER LEU LEU ILE TRP THR THR THR PRO TRP THR SEQRES 4 A 194 LEU PRO GLY ASN VAL ALA ALA ALA VAL HIS PRO GLU TYR SEQRES 5 A 194 THR TYR ALA ALA PHE GLN VAL GLY ASP GLU ALA LEU ILE SEQRES 6 A 194 LEU GLU GLU GLY LEU GLY ARG LYS LEU LEU GLY GLU GLY SEQRES 7 A 194 THR PRO VAL LEU LYS THR PHE PRO GLY LYS ALA LEU GLU SEQRES 8 A 194 GLY LEU PRO TYR THR PRO PRO TYR PRO GLN ALA LEU GLU SEQRES 9 A 194 LYS GLY TYR PHE VAL VAL LEU ALA ASP TYR VAL SER GLN SEQRES 10 A 194 GLU ASP GLY THR GLY ILE VAL HIS GLN ALA PRO ALA PHE SEQRES 11 A 194 GLY ALA GLU ASP LEU GLU THR ALA ARG VAL TYR GLY LEU SEQRES 12 A 194 PRO LEU LEU LYS THR VAL ASP GLU GLU GLY LYS LEU LEU SEQRES 13 A 194 VAL GLU PRO PHE LYS GLY LEU TYR PHE ARG GLU ALA ASN SEQRES 14 A 194 ARG ALA ILE LEU ARG ASP LEU ARG GLY ARG GLY LEU LEU SEQRES 15 A 194 PHE LYS GLU GLU SER TYR LEU HIS SER TYR PRO HIS SEQRES 1 B 194 MET GLY TYR LYS GLU ILE GLN ASP PRO SER VAL TYR VAL SEQRES 2 B 194 ARG PHE PRO LEU LYS GLU PRO LYS LYS LEU GLY LEU GLU SEQRES 3 B 194 LYS ALA SER LEU LEU ILE TRP THR THR THR PRO TRP THR SEQRES 4 B 194 LEU PRO GLY ASN VAL ALA ALA ALA VAL HIS PRO GLU TYR SEQRES 5 B 194 THR TYR ALA ALA PHE GLN VAL GLY ASP GLU ALA LEU ILE SEQRES 6 B 194 LEU GLU GLU GLY LEU GLY ARG LYS LEU LEU GLY GLU GLY SEQRES 7 B 194 THR PRO VAL LEU LYS THR PHE PRO GLY LYS ALA LEU GLU SEQRES 8 B 194 GLY LEU PRO TYR THR PRO PRO TYR PRO GLN ALA LEU GLU SEQRES 9 B 194 LYS GLY TYR PHE VAL VAL LEU ALA ASP TYR VAL SER GLN SEQRES 10 B 194 GLU ASP GLY THR GLY ILE VAL HIS GLN ALA PRO ALA PHE SEQRES 11 B 194 GLY ALA GLU ASP LEU GLU THR ALA ARG VAL TYR GLY LEU SEQRES 12 B 194 PRO LEU LEU LYS THR VAL ASP GLU GLU GLY LYS LEU LEU SEQRES 13 B 194 VAL GLU PRO PHE LYS GLY LEU TYR PHE ARG GLU ALA ASN SEQRES 14 B 194 ARG ALA ILE LEU ARG ASP LEU ARG GLY ARG GLY LEU LEU SEQRES 15 B 194 PHE LYS GLU GLU SER TYR LEU HIS SER TYR PRO HIS HET VMS B 999 30 HETNAM VMS 5'O-[N-(L-VALYL)SULPHAMOYL]ADENOSINE FORMUL 3 VMS C15 H23 N7 O7 S FORMUL 4 HOH *274(H2 O) HELIX 1 1 GLU A 213 GLY A 218 5 6 HELIX 2 2 THR A 230 ASN A 237 5 8 HELIX 3 3 GLU A 262 GLY A 270 1 9 HELIX 4 4 LYS A 282 GLU A 285 5 4 HELIX 5 5 ALA A 321 PHE A 324 5 4 HELIX 6 6 GLY A 325 TYR A 335 1 11 HELIX 7 7 TYR A 358 ARG A 373 1 16 HELIX 8 8 GLU B 213 GLY B 218 5 6 HELIX 9 9 THR B 230 ASN B 237 5 8 HELIX 10 10 GLU B 262 GLY B 270 1 9 HELIX 11 11 GLY B 281 GLU B 285 1 5 HELIX 12 12 GLY B 325 GLY B 336 1 12 HELIX 13 13 TYR B 358 ARG B 373 1 16 SHEET 1 A 6 VAL A 275 PRO A 280 0 SHEET 2 A 6 THR A 247 VAL A 253 -1 N TYR A 248 O PHE A 279 SHEET 3 A 6 GLU A 256 GLU A 261 -1 O LEU A 258 N PHE A 251 SHEET 4 A 6 ALA A 222 THR A 228 1 N SER A 223 O ILE A 259 SHEET 5 A 6 SER A 204 PRO A 210 -1 N VAL A 207 O ILE A 226 SHEET 6 A 6 LEU A 376 GLU A 380 -1 O PHE A 377 N TYR A 206 SHEET 1 B 3 VAL A 303 LEU A 305 0 SHEET 2 B 3 ALA A 239 VAL A 242 1 N ALA A 240 O VAL A 304 SHEET 3 B 3 VAL A 318 GLN A 320 -1 O VAL A 318 N ALA A 241 SHEET 1 C 6 VAL B 275 PRO B 280 0 SHEET 2 C 6 THR B 247 VAL B 253 -1 N TYR B 248 O PHE B 279 SHEET 3 C 6 GLU B 256 GLU B 261 -1 O GLU B 256 N VAL B 253 SHEET 4 C 6 ALA B 222 THR B 228 1 N SER B 223 O ILE B 259 SHEET 5 C 6 SER B 204 PRO B 210 -1 N VAL B 207 O ILE B 226 SHEET 6 C 6 LEU B 376 GLU B 380 -1 O GLU B 380 N SER B 204 SHEET 1 D 3 VAL B 303 LEU B 305 0 SHEET 2 D 3 ALA B 239 VAL B 242 1 N ALA B 240 O VAL B 304 SHEET 3 D 3 ILE B 317 GLN B 320 -1 O VAL B 318 N ALA B 241 CISPEP 1 GLU A 352 PRO A 353 0 0.97 CISPEP 2 GLU B 352 PRO B 353 0 0.33 CISPEP 3 TYR B 386 PRO B 387 0 0.12 SITE 1 AC1 16 TRP B 227 THR B 228 THR B 229 THR B 230 SITE 2 AC1 16 TYR B 308 VAL B 309 SER B 310 VAL B 318 SITE 3 AC1 16 HIS B 319 PHE B 324 GLU B 327 ASP B 328 SITE 4 AC1 16 HOH B1027 HOH B1029 HOH B1033 HOH B1066 CRYST1 101.998 101.998 84.883 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009804 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011781 0.00000