data_1WKS # _entry.id 1WKS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WKS pdb_00001wks 10.2210/pdb1wks/pdb RCSB RCSB023685 ? ? WWPDB D_1000023685 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-06-22 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WKS _pdbx_database_status.recvd_initial_deposition_date 2004-06-04 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baba, S.' 1 'Kajikawa, M.' 2 'Okada, N.' 3 'Kawai, G.' 4 # _citation.id primary _citation.title ;Solution structure of an RNA stem-loop derived from the 3' conserved region of eel LINE UnaL2 ; _citation.journal_abbrev Rna _citation.journal_volume 10 _citation.page_first 1380 _citation.page_last 1387 _citation.year 2004 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15273327 _citation.pdbx_database_id_DOI 10.1261/rna.7460104 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baba, S.' 1 ? primary 'Kajikawa, M.' 2 ? primary 'Okada, N.' 3 ? primary 'Kawai, G.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-R(*GP*GP*CP*UP*UP*UP*GP*GP*AP*UP*AP*AP*AP*AP*GP*CP*C)-3'" _entity.formula_weight 5467.309 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCUUUGGAUAAAAGCC _entity_poly.pdbx_seq_one_letter_code_can GGCUUUGGAUAAAAGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 U n 1 6 U n 1 7 G n 1 8 G n 1 9 A n 1 10 U n 1 11 A n 1 12 A n 1 13 A n 1 14 A n 1 15 G n 1 16 C n 1 17 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemical synthesized 17-mer RNA corresponding to the RT binding site of eel LINE RNA.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 U 4 4 4 U U A . n A 1 5 U 5 5 5 U U A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 U 10 10 10 U U A . n A 1 11 A 11 11 11 A A A . n A 1 12 A 12 12 12 A A A . n A 1 13 A 13 13 13 A A A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n A 1 17 C 17 17 17 C C A . n # _exptl.entry_id 1WKS _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1WKS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1WKS _struct.title ;Solution structure of an RNA stem-loop derived from the 3' conserved region of eel LINE UnaL2 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1WKS _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, pentaloop, LINE, retrotransposition' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1WKS _struct_ref.pdbx_db_accession 1WKS _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WKS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1WKS _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 17 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 1 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 1 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 1 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 16 N3 ? ? A G 2 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 16 O2 ? ? A G 2 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 2 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 15 N1 ? ? A C 3 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 15 O6 ? ? A C 3 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 15 N2 ? ? A C 3 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 14 N1 ? ? A U 4 A A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 14 N6 ? ? A U 4 A A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 13 N1 ? ? A U 5 A A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 13 N6 ? ? A U 5 A A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 12 N1 ? ? A U 6 A A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 12 N6 ? ? A U 6 A A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 A A 11 N7 ? ? A G 7 A A 11 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog17 hydrog ? ? A G 7 N3 ? ? ? 1_555 A A 11 N6 ? ? A G 7 A A 11 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.02 108.50 4.52 0.70 N 2 1 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.46 108.50 4.96 0.70 N 3 1 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.08 108.50 4.58 0.70 N 4 1 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.78 108.50 5.28 0.70 N 5 1 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.71 108.50 5.21 0.70 N 6 1 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 113.08 108.50 4.58 0.70 N 7 1 "O4'" A G 15 ? ? "C1'" A G 15 ? ? N9 A G 15 ? ? 112.83 108.50 4.33 0.70 N 8 1 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.37 108.50 4.87 0.70 N 9 2 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.08 108.50 4.58 0.70 N 10 2 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.08 108.50 4.58 0.70 N 11 2 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.12 108.50 4.62 0.70 N 12 2 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 114.05 108.50 5.55 0.70 N 13 2 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 112.74 108.50 4.24 0.70 N 14 2 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.44 108.50 4.94 0.70 N 15 3 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.32 108.50 4.82 0.70 N 16 3 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.22 108.50 4.72 0.70 N 17 3 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.55 108.50 5.05 0.70 N 18 3 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.12 108.50 4.62 0.70 N 19 3 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 114.33 108.50 5.83 0.70 N 20 3 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 112.98 108.50 4.48 0.70 N 21 3 "O4'" A G 15 ? ? "C1'" A G 15 ? ? N9 A G 15 ? ? 112.86 108.50 4.36 0.70 N 22 3 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.43 108.50 4.93 0.70 N 23 4 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 112.84 108.50 4.34 0.70 N 24 4 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 112.92 108.50 4.42 0.70 N 25 4 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 114.11 108.50 5.61 0.70 N 26 4 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.15 108.50 4.65 0.70 N 27 4 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 112.89 108.50 4.39 0.70 N 28 4 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.13 108.50 4.63 0.70 N 29 5 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.13 108.50 4.63 0.70 N 30 5 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.55 108.50 5.05 0.70 N 31 5 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 112.88 108.50 4.38 0.70 N 32 5 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 112.96 108.50 4.46 0.70 N 33 5 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 112.73 108.50 4.23 0.70 N 34 5 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.23 108.50 4.73 0.70 N 35 6 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.88 108.50 4.38 0.70 N 36 6 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.04 108.50 4.54 0.70 N 37 6 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.24 108.50 4.74 0.70 N 38 6 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.89 108.50 5.39 0.70 N 39 6 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 113.48 108.50 4.98 0.70 N 40 6 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 113.13 108.50 4.63 0.70 N 41 6 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 112.96 108.50 4.46 0.70 N 42 7 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 112.71 108.50 4.21 0.70 N 43 7 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.09 108.50 4.59 0.70 N 44 7 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.12 108.50 4.62 0.70 N 45 7 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.14 108.50 4.64 0.70 N 46 7 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.97 108.50 5.47 0.70 N 47 7 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 114.62 108.50 6.12 0.70 N 48 7 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 113.00 108.50 4.50 0.70 N 49 7 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.06 108.50 4.56 0.70 N 50 8 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 112.95 108.50 4.45 0.70 N 51 8 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.02 108.50 4.52 0.70 N 52 8 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.33 108.50 4.83 0.70 N 53 8 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.19 108.50 4.69 0.70 N 54 8 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 115.37 108.50 6.87 0.70 N 55 8 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 112.78 108.50 4.28 0.70 N 56 8 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 112.96 108.50 4.46 0.70 N 57 8 "O4'" A G 15 ? ? "C1'" A G 15 ? ? N9 A G 15 ? ? 112.74 108.50 4.24 0.70 N 58 8 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.55 108.50 5.05 0.70 N 59 9 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.30 108.50 4.80 0.70 N 60 9 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.42 108.50 4.92 0.70 N 61 9 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.47 108.50 4.97 0.70 N 62 9 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.24 108.50 4.74 0.70 N 63 9 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 113.18 108.50 4.68 0.70 N 64 9 "O4'" A G 15 ? ? "C1'" A G 15 ? ? N9 A G 15 ? ? 112.76 108.50 4.26 0.70 N 65 9 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.31 108.50 4.81 0.70 N 66 10 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.87 108.50 4.37 0.70 N 67 10 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.50 108.50 5.00 0.70 N 68 10 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 114.49 108.50 5.99 0.70 N 69 10 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 116.12 108.50 7.62 0.70 N 70 10 "O4'" A U 10 ? ? "C1'" A U 10 ? ? N1 A U 10 ? ? 114.25 108.50 5.75 0.70 N 71 10 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 113.37 108.50 4.87 0.70 N 72 10 "O4'" A G 15 ? ? "C1'" A G 15 ? ? N9 A G 15 ? ? 112.95 108.50 4.45 0.70 N 73 10 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.22 108.50 4.72 0.70 N 74 11 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.28 108.50 4.78 0.70 N 75 11 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.29 108.50 4.79 0.70 N 76 11 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.92 108.50 5.42 0.70 N 77 11 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.39 108.50 4.89 0.70 N 78 11 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 113.32 108.50 4.82 0.70 N 79 11 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 112.91 108.50 4.41 0.70 N 80 12 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 112.87 108.50 4.37 0.70 N 81 12 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.15 108.50 4.65 0.70 N 82 12 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.18 108.50 4.68 0.70 N 83 12 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.14 108.50 4.64 0.70 N 84 12 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.46 108.50 4.96 0.70 N 85 12 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.01 108.50 4.51 0.70 N 86 12 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 112.94 108.50 4.44 0.70 N 87 12 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.50 108.50 5.00 0.70 N 88 13 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.31 108.50 4.81 0.70 N 89 13 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.15 108.50 4.65 0.70 N 90 13 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.10 108.50 4.60 0.70 N 91 13 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.82 108.50 5.32 0.70 N 92 13 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 113.02 108.50 4.52 0.70 N 93 13 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.26 108.50 4.76 0.70 N 94 14 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 112.99 108.50 4.49 0.70 N 95 14 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.12 108.50 4.62 0.70 N 96 14 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.37 108.50 4.87 0.70 N 97 14 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.12 108.50 4.62 0.70 N 98 14 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.93 108.50 5.43 0.70 N 99 14 "C1'" A G 8 ? ? "O4'" A G 8 ? ? "C4'" A G 8 ? ? 105.30 109.70 -4.40 0.70 N 100 14 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.22 108.50 4.72 0.70 N 101 14 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 112.98 108.50 4.48 0.70 N 102 14 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.49 108.50 4.99 0.70 N 103 15 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.34 108.50 4.84 0.70 N 104 15 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.21 108.50 4.71 0.70 N 105 15 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.18 108.50 4.68 0.70 N 106 15 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.71 108.50 5.21 0.70 N 107 15 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 112.79 108.50 4.29 0.70 N 108 15 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 113.46 108.50 4.96 0.70 N 109 15 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 112.96 108.50 4.46 0.70 N 110 15 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.32 108.50 4.82 0.70 N 111 16 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.14 108.50 4.64 0.70 N 112 16 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.19 108.50 4.69 0.70 N 113 16 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.17 108.50 4.67 0.70 N 114 16 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.54 108.50 5.04 0.70 N 115 16 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 112.85 108.50 4.35 0.70 N 116 16 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.47 108.50 4.97 0.70 N 117 17 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.02 108.50 4.52 0.70 N 118 17 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.15 108.50 4.65 0.70 N 119 17 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.11 108.50 4.61 0.70 N 120 17 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.09 108.50 4.59 0.70 N 121 17 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 114.40 108.50 5.90 0.70 N 122 17 "O4'" A U 10 ? ? "C1'" A U 10 ? ? N1 A U 10 ? ? 114.40 108.50 5.90 0.70 N 123 17 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 112.97 108.50 4.47 0.70 N 124 17 "O4'" A G 15 ? ? "C1'" A G 15 ? ? N9 A G 15 ? ? 112.81 108.50 4.31 0.70 N 125 17 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.36 108.50 4.86 0.70 N 126 18 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.22 108.50 4.72 0.70 N 127 18 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.36 108.50 4.86 0.70 N 128 18 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 115.01 108.50 6.51 0.70 N 129 18 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 113.15 108.50 4.65 0.70 N 130 18 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.37 108.50 4.87 0.70 N 131 19 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.26 108.50 4.76 0.70 N 132 19 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.26 108.50 4.76 0.70 N 133 19 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 112.97 108.50 4.47 0.70 N 134 19 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 114.25 108.50 5.75 0.70 N 135 19 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 114.47 108.50 5.97 0.70 N 136 19 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 113.11 108.50 4.61 0.70 N 137 19 "O4'" A G 15 ? ? "C1'" A G 15 ? ? N9 A G 15 ? ? 112.75 108.50 4.25 0.70 N 138 19 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.29 108.50 4.79 0.70 N 139 20 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.11 108.50 4.61 0.70 N 140 20 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.20 108.50 4.70 0.70 N 141 20 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.61 108.50 5.11 0.70 N 142 20 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.87 108.50 5.37 0.70 N 143 20 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.48 108.50 4.98 0.70 N 144 20 "O4'" A U 10 ? ? "C1'" A U 10 ? ? N1 A U 10 ? ? 112.72 108.50 4.22 0.70 N 145 20 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.46 108.50 4.96 0.70 N 146 21 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.24 108.50 4.74 0.70 N 147 21 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.28 108.50 4.78 0.70 N 148 21 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 112.92 108.50 4.42 0.70 N 149 21 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.66 108.50 5.16 0.70 N 150 21 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.73 108.50 5.23 0.70 N 151 21 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 113.12 108.50 4.62 0.70 N 152 21 "O4'" A G 15 ? ? "C1'" A G 15 ? ? N9 A G 15 ? ? 112.79 108.50 4.29 0.70 N 153 21 "O4'" A C 16 ? ? "C1'" A C 16 ? ? N1 A C 16 ? ? 113.31 108.50 4.81 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A A 11 ? ? 0.074 'SIDE CHAIN' 2 2 U A 4 ? ? 0.065 'SIDE CHAIN' 3 2 A A 12 ? ? 0.056 'SIDE CHAIN' 4 3 U A 5 ? ? 0.069 'SIDE CHAIN' 5 4 G A 1 ? ? 0.073 'SIDE CHAIN' 6 4 U A 4 ? ? 0.068 'SIDE CHAIN' 7 4 A A 12 ? ? 0.108 'SIDE CHAIN' 8 4 G A 15 ? ? 0.070 'SIDE CHAIN' 9 5 A A 11 ? ? 0.062 'SIDE CHAIN' 10 5 A A 12 ? ? 0.072 'SIDE CHAIN' 11 5 G A 15 ? ? 0.071 'SIDE CHAIN' 12 6 U A 4 ? ? 0.064 'SIDE CHAIN' 13 6 G A 15 ? ? 0.080 'SIDE CHAIN' 14 7 U A 4 ? ? 0.076 'SIDE CHAIN' 15 7 A A 11 ? ? 0.065 'SIDE CHAIN' 16 8 U A 4 ? ? 0.065 'SIDE CHAIN' 17 9 A A 12 ? ? 0.055 'SIDE CHAIN' 18 11 U A 4 ? ? 0.064 'SIDE CHAIN' 19 11 A A 11 ? ? 0.067 'SIDE CHAIN' 20 11 G A 15 ? ? 0.077 'SIDE CHAIN' 21 12 U A 4 ? ? 0.069 'SIDE CHAIN' 22 13 U A 4 ? ? 0.071 'SIDE CHAIN' 23 14 A A 12 ? ? 0.083 'SIDE CHAIN' 24 15 U A 4 ? ? 0.069 'SIDE CHAIN' 25 16 A A 12 ? ? 0.050 'SIDE CHAIN' 26 17 A A 11 ? ? 0.086 'SIDE CHAIN' 27 17 A A 12 ? ? 0.070 'SIDE CHAIN' 28 18 U A 4 ? ? 0.062 'SIDE CHAIN' 29 18 A A 12 ? ? 0.052 'SIDE CHAIN' 30 19 U A 4 ? ? 0.062 'SIDE CHAIN' 31 20 U A 6 ? ? 0.069 'SIDE CHAIN' 32 21 A A 11 ? ? 0.083 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 1WKS _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 21 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1WKS _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1mM RNA FRAGMENT; 10mM phosphate buffer, 50 mM NaCl; 100% D2O' '100% D2O' 2 '1mM RNA FRAGMENT; 10mM phosphate buffer, 50 mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' 3 '1mM RNA FRAGMENT (15N, 13C-Guanosine, Uridine labeled 36-mer RNA); 10mM phosphate buffer, 50 mM NaCl; 100% D2O' '100% D2O' 4 '1mM RNA FRAGMENT (15N, 13C-Guanosine, Uridine labeled 36-mer RNA); 10mM phosphate buffer, 50 mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '50mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 2 '2D NOESY' 3 1 1 '2D TOCSY' 4 1 1 DQF-COSY 5 1 3 2D-HSQC 6 1 4 '1D-HSQC-selected spectrum' 7 1 4 '1D-HSQC-filtered spectrum' # _pdbx_nmr_refine.entry_id 1WKS _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;The structures are based on a total of 298 restraints, 204 are NOE-derived distance constraints, 80 dihedral angle restraints, 14 distance restraints from hydrogen bonds. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.6 processing BRUKER 1 Felix 97.0 'data analysis' 'Molecular Simulations' 2 Discover 97.0 'structure solution' Accelrys 3 Discover 97.0 refinement Accelrys 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1WKS 'a-form double helix' 1WKS 'hairpin loop' 1WKS 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 17 1_555 0.116 0.057 0.254 7.692 -7.371 -1.889 1 A_G1:C17_A A 1 ? A 17 ? 19 1 1 A G 2 1_555 A C 16 1_555 -0.674 -0.148 0.126 11.886 -13.693 -1.298 2 A_G2:C16_A A 2 ? A 16 ? 19 1 1 A C 3 1_555 A G 15 1_555 0.781 -0.119 -0.378 13.680 -26.378 4.777 3 A_C3:G15_A A 3 ? A 15 ? 19 1 1 A U 4 1_555 A A 14 1_555 0.429 -0.073 -0.063 6.328 -4.738 -1.578 4 A_U4:A14_A A 4 ? A 14 ? 20 1 1 A U 5 1_555 A A 13 1_555 0.395 -0.087 -0.585 1.664 -11.871 1.735 5 A_U5:A13_A A 5 ? A 13 ? 20 1 1 A U 6 1_555 A A 12 1_555 0.554 -0.068 0.035 -17.391 -1.483 -2.369 6 A_U6:A12_A A 6 ? A 12 ? 20 1 1 A G 7 1_555 A A 11 1_555 6.715 -4.334 0.680 -3.802 7.933 -4.582 7 A_G7:A11_A A 7 ? A 11 ? 11 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 17 1_555 A G 2 1_555 A C 16 1_555 -0.101 -1.995 2.872 -3.376 8.872 27.935 -5.415 -0.371 2.148 17.742 6.751 29.474 1 AA_G1G2:C16C17_AA A 1 ? A 17 ? A 2 ? A 16 ? 1 A G 2 1_555 A C 16 1_555 A C 3 1_555 A G 15 1_555 0.239 -1.647 3.103 2.649 2.905 35.028 -3.122 -0.028 2.971 4.807 -4.384 35.242 2 AA_G2C3:G15C16_AA A 2 ? A 16 ? A 3 ? A 15 ? 1 A C 3 1_555 A G 15 1_555 A U 4 1_555 A A 14 1_555 -0.215 -2.110 3.307 -0.381 10.462 33.204 -4.995 0.307 2.548 17.766 0.647 34.771 3 AA_C3U4:A14G15_AA A 3 ? A 15 ? A 4 ? A 14 ? 1 A U 4 1_555 A A 14 1_555 A U 5 1_555 A A 13 1_555 -0.091 -1.978 3.162 4.155 9.370 28.905 -5.360 0.890 2.384 18.068 -8.012 30.632 4 AA_U4U5:A13A14_AA A 4 ? A 14 ? A 5 ? A 13 ? 1 A U 5 1_555 A A 13 1_555 A U 6 1_555 A A 12 1_555 0.125 -2.049 3.620 -3.291 10.204 31.975 -5.218 -0.759 2.826 17.905 5.775 33.680 5 AA_U5U6:A12A13_AA A 5 ? A 13 ? A 6 ? A 12 ? 1 A U 6 1_555 A A 12 1_555 A G 7 1_555 A A 11 1_555 -0.173 -0.913 2.888 -0.976 7.322 58.690 -1.250 0.133 2.768 7.438 0.991 59.112 6 AA_U6G7:A11A12_AA A 6 ? A 12 ? A 7 ? A 11 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DRX 500 2 ? Bruker DRX 600 # _atom_sites.entry_id 1WKS _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_