HEADER LIGASE 25-JUN-04 1WLE TITLE CRYSTAL STRUCTURE OF MAMMALIAN MITOCHONDRIAL SERYL-TRNA SYNTHETASE TITLE 2 COMPLEXED WITH SERYL-ADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MITOCHONDRIAL SERYL-TRNA SYNTHETASE, SERINE--TRNA LIGASE, COMPND 5 SERRSMT; COMPND 6 EC: 6.1.1.11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: SERRSMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA (NOVAGEN); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-19B KEYWDS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.CHIMNARONK,M.G.JEPPESEN,T.SUZUKI,J.NYBORG,K.WATANABE REVDAT 4 25-OCT-23 1WLE 1 REMARK SEQADV REVDAT 3 24-FEB-09 1WLE 1 VERSN REVDAT 2 24-JAN-06 1WLE 1 JRNL REVDAT 1 06-SEP-05 1WLE 0 JRNL AUTH S.CHIMNARONK,M.G.JEPPESEN,T.SUZUKI,J.NYBORG,K.WATANABE JRNL TITL DUAL-MODE RECOGNITION OF NONCANONICAL TRNAS(SER) BY JRNL TITL 2 SERYL-TRNA SYNTHETASE IN MAMMALIAN MITOCHONDRIA JRNL REF EMBO J. V. 24 3369 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 16163389 JRNL DOI 10.1038/SJ.EMBOJ.7600811 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.YOKOGAWA,N.SHIMADA,N.TAKEUCHI,L.BENKOWSKI,T.SUZUKI, REMARK 1 AUTH 2 A.OMORI,T.UEDA,K.NISHIKAWA,L.L.SPREMULLI,K.WATANABE REMARK 1 TITL CHARACTERIZATION AND TRNA RECOGNITION OF MAMMALIAN REMARK 1 TITL 2 MITOCHONDRIAL SERYL-TRNA SYNTHETASE REMARK 1 REF J.BIOL.CHEM. V. 275 19913 2000 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 10764807 REMARK 1 DOI 10.1074/JBC.M908473199 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.SHIMADA,T.SUZUKI,K.WATANABE REMARK 1 TITL DUAL MODE RECOGNITION OF TWO ISOACCEPTOR TRNAS BY MAMMALIAN REMARK 1 TITL 2 MITOCHONDRIAL SERYL-TRNA SYNTHETASE REMARK 1 REF J.BIOL.CHEM. V. 276 46770 2001 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 11577083 REMARK 1 DOI 10.1074/JBC.M105150200 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.CHIMNARONK,M.G.JEPPESEN,N.SHIMADA,T.SUZUKI,J.NYBORG, REMARK 1 AUTH 2 K.WATANABE REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDY OF REMARK 1 TITL 2 MAMMALIAN MITOCHONDRIAL SERYL-TRNA SYNTHETASE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 1319 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15213404 REMARK 1 DOI 10.1107/S0907444904011217 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 144630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 14531 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 0.93 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 12400 REMARK 3 BIN R VALUE (WORKING SET) : 0.2777 REMARK 3 BIN FREE R VALUE : 0.2895 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.53 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1420 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7437 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 611 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.42100 REMARK 3 B22 (A**2) : -2.23300 REMARK 3 B33 (A**2) : 3.65400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.354 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.12 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.815 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.169 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.844 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 1.819 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.756 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : THROUGHOUT REMARK 3 KSOL : 0.48 REMARK 3 BSOL : 63.34 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : SMP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : SMP.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WLE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : TRIANGULAR REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 145408 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.37200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1SRY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, LITHIUM SULFATE, MES-NAOH, REMARK 280 DTT, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.79500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.79500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.93200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 115.17500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.93200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 115.17500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.79500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.93200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 115.17500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.79500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.93200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 115.17500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMODIMER FOUND IN THE REMARK 300 ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 LEU A 12 REMARK 465 VAL A 13 REMARK 465 PRO A 14 REMARK 465 ARG A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 GLU A 20 REMARK 465 ARG A 21 REMARK 465 GLN A 22 REMARK 465 ASP A 23 REMARK 465 LYS A 320 REMARK 465 GLU A 321 REMARK 465 LYS A 491 REMARK 465 PRO A 492 REMARK 465 ARG A 493 REMARK 465 LEU A 494 REMARK 465 PRO A 495 REMARK 465 GLY A 496 REMARK 465 GLN A 497 REMARK 465 PRO A 498 REMARK 465 ALA A 499 REMARK 465 SER A 500 REMARK 465 SER A 501 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 GLY B 11 REMARK 465 LEU B 12 REMARK 465 VAL B 13 REMARK 465 PRO B 14 REMARK 465 ARG B 15 REMARK 465 GLY B 16 REMARK 465 SER B 17 REMARK 465 ALA B 18 REMARK 465 THR B 19 REMARK 465 GLU B 20 REMARK 465 ARG B 21 REMARK 465 LYS B 491 REMARK 465 PRO B 492 REMARK 465 ARG B 493 REMARK 465 LEU B 494 REMARK 465 PRO B 495 REMARK 465 GLY B 496 REMARK 465 GLN B 497 REMARK 465 PRO B 498 REMARK 465 ALA B 499 REMARK 465 SER B 500 REMARK 465 SER B 501 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA B 261 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 PRO B 263 C - N - CA ANGL. DEV. = -25.5 DEGREES REMARK 500 PRO B 263 C - N - CD ANGL. DEV. = 23.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 262 -72.21 -30.58 REMARK 500 ASP A 270 109.47 -41.88 REMARK 500 ASP A 276 66.11 39.71 REMARK 500 GLU A 315 49.44 39.34 REMARK 500 THR A 318 -165.07 -165.46 REMARK 500 THR A 409 -123.80 39.48 REMARK 500 LEU B 103 69.09 -119.56 REMARK 500 ASP B 108 45.19 -92.01 REMARK 500 SER B 110 13.09 -167.94 REMARK 500 GLN B 114 13.72 -148.60 REMARK 500 SER B 120 -18.15 82.08 REMARK 500 ARG B 122 -28.28 -149.54 REMARK 500 ARG B 210 -12.74 72.63 REMARK 500 ASN B 260 88.87 -157.39 REMARK 500 ALA B 261 -155.03 -98.26 REMARK 500 LYS B 262 -66.53 -90.59 REMARK 500 ASP B 270 108.10 -43.59 REMARK 500 ASP B 276 65.27 38.66 REMARK 500 ASP B 317 6.48 55.91 REMARK 500 THR B 409 -125.02 34.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SRP A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SRP B 901 DBREF 1WLE A 18 501 UNP Q9N0F3 SYSM_BOVIN 35 518 DBREF 1WLE B 18 501 UNP Q9N0F3 SYSM_BOVIN 35 518 SEQADV 1WLE MET A 1 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE GLY A 2 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS A 3 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS A 4 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS A 5 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS A 6 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS A 7 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS A 8 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE SER A 9 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE SER A 10 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE GLY A 11 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE LEU A 12 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE VAL A 13 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE PRO A 14 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE ARG A 15 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE GLY A 16 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE SER A 17 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE MET B 1 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE GLY B 2 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS B 3 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS B 4 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS B 5 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS B 6 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS B 7 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE HIS B 8 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE SER B 9 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE SER B 10 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE GLY B 11 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE LEU B 12 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE VAL B 13 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE PRO B 14 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE ARG B 15 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE GLY B 16 UNP Q9N0F3 EXPRESSION TAG SEQADV 1WLE SER B 17 UNP Q9N0F3 EXPRESSION TAG SEQRES 1 A 501 MET GLY HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL SEQRES 2 A 501 PRO ARG GLY SER ALA THR GLU ARG GLN ASP ARG ASN LEU SEQRES 3 A 501 LEU TYR GLU HIS ALA ARG GLU GLY TYR SER ALA LEU PRO SEQRES 4 A 501 LEU LEU ASP MET GLU SER LEU CYS ALA TYR PRO GLU ASP SEQRES 5 A 501 ALA ALA ARG ALA LEU ASP LEU ARG LYS GLY GLU LEU ARG SEQRES 6 A 501 SER LYS ASP LEU PRO GLY ILE ILE SER THR TRP GLN GLU SEQRES 7 A 501 LEU ARG GLN LEU ARG GLU GLN ILE ARG SER LEU GLU GLU SEQRES 8 A 501 GLU LYS GLU ALA VAL THR GLU ALA VAL ARG ALA LEU VAL SEQRES 9 A 501 VAL ASN GLN ASP ASN SER GLN VAL GLN GLN ASP PRO GLN SEQRES 10 A 501 TYR GLN SER LEU ARG ALA ARG GLY ARG GLU ILE ARG LYS SEQRES 11 A 501 GLN LEU THR LEU LEU TYR PRO LYS GLU ALA GLN LEU GLU SEQRES 12 A 501 GLU GLN PHE TYR LEU ARG ALA LEU ARG LEU PRO ASN GLN SEQRES 13 A 501 THR HIS PRO ASP VAL PRO VAL GLY ASP GLU SER GLN ALA SEQRES 14 A 501 ARG VAL LEU HIS VAL VAL GLY ASP LYS PRO ALA PHE SER SEQRES 15 A 501 PHE GLN PRO ARG GLY HIS LEU GLU ILE ALA GLU LYS LEU SEQRES 16 A 501 ASP ILE ILE ARG GLN LYS ARG LEU SER HIS VAL SER GLY SEQRES 17 A 501 HIS ARG SER TYR TYR LEU ARG GLY ALA GLY ALA LEU LEU SEQRES 18 A 501 GLN HIS GLY LEU VAL ASN PHE THR LEU ASN LYS LEU ILE SEQRES 19 A 501 HIS ARG GLY PHE THR PRO MET THR VAL PRO ASP LEU LEU SEQRES 20 A 501 ARG GLY VAL VAL PHE GLU GLY CYS GLY MET THR PRO ASN SEQRES 21 A 501 ALA LYS PRO SER GLN ILE TYR ASN ILE ASP PRO SER ARG SEQRES 22 A 501 PHE GLU ASP LEU ASN LEU ALA GLY THR ALA GLU VAL GLY SEQRES 23 A 501 LEU ALA GLY TYR PHE MET ASP HIS SER VAL ALA PHE ARG SEQRES 24 A 501 ASP LEU PRO ILE ARG MET VAL CYS SER SER THR CYS TYR SEQRES 25 A 501 ARG ALA GLU THR ASP THR GLY LYS GLU PRO TRP GLY LEU SEQRES 26 A 501 TYR ARG VAL HIS HIS PHE THR LYS VAL GLU MET PHE GLY SEQRES 27 A 501 VAL THR GLY PRO GLY LEU GLU GLN SER SER GLU LEU LEU SEQRES 28 A 501 GLU GLU PHE LEU SER LEU GLN MET GLU ILE LEU THR GLU SEQRES 29 A 501 LEU GLY LEU HIS PHE ARG VAL LEU ASP MET PRO THR GLN SEQRES 30 A 501 GLU LEU GLY LEU PRO ALA TYR ARG LYS PHE ASP ILE GLU SEQRES 31 A 501 ALA TRP MET PRO GLY ARG GLY ARG PHE GLY GLU VAL THR SEQRES 32 A 501 SER ALA SER ASN CYS THR ASP PHE GLN SER ARG ARG LEU SEQRES 33 A 501 HIS ILE MET PHE GLN THR GLU ALA GLY GLU LEU GLN PHE SEQRES 34 A 501 ALA HIS THR VAL ASN ALA THR GLY CYS ALA VAL PRO ARG SEQRES 35 A 501 LEU LEU ILE ALA LEU LEU GLU SER TYR GLN GLN LYS ASP SEQRES 36 A 501 GLY SER VAL LEU VAL PRO PRO ALA LEU GLN PRO TYR LEU SEQRES 37 A 501 GLY THR ASP ARG ILE THR THR PRO THR HIS VAL PRO LEU SEQRES 38 A 501 GLN TYR ILE GLY PRO ASN GLN PRO GLN LYS PRO ARG LEU SEQRES 39 A 501 PRO GLY GLN PRO ALA SER SER SEQRES 1 B 501 MET GLY HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL SEQRES 2 B 501 PRO ARG GLY SER ALA THR GLU ARG GLN ASP ARG ASN LEU SEQRES 3 B 501 LEU TYR GLU HIS ALA ARG GLU GLY TYR SER ALA LEU PRO SEQRES 4 B 501 LEU LEU ASP MET GLU SER LEU CYS ALA TYR PRO GLU ASP SEQRES 5 B 501 ALA ALA ARG ALA LEU ASP LEU ARG LYS GLY GLU LEU ARG SEQRES 6 B 501 SER LYS ASP LEU PRO GLY ILE ILE SER THR TRP GLN GLU SEQRES 7 B 501 LEU ARG GLN LEU ARG GLU GLN ILE ARG SER LEU GLU GLU SEQRES 8 B 501 GLU LYS GLU ALA VAL THR GLU ALA VAL ARG ALA LEU VAL SEQRES 9 B 501 VAL ASN GLN ASP ASN SER GLN VAL GLN GLN ASP PRO GLN SEQRES 10 B 501 TYR GLN SER LEU ARG ALA ARG GLY ARG GLU ILE ARG LYS SEQRES 11 B 501 GLN LEU THR LEU LEU TYR PRO LYS GLU ALA GLN LEU GLU SEQRES 12 B 501 GLU GLN PHE TYR LEU ARG ALA LEU ARG LEU PRO ASN GLN SEQRES 13 B 501 THR HIS PRO ASP VAL PRO VAL GLY ASP GLU SER GLN ALA SEQRES 14 B 501 ARG VAL LEU HIS VAL VAL GLY ASP LYS PRO ALA PHE SER SEQRES 15 B 501 PHE GLN PRO ARG GLY HIS LEU GLU ILE ALA GLU LYS LEU SEQRES 16 B 501 ASP ILE ILE ARG GLN LYS ARG LEU SER HIS VAL SER GLY SEQRES 17 B 501 HIS ARG SER TYR TYR LEU ARG GLY ALA GLY ALA LEU LEU SEQRES 18 B 501 GLN HIS GLY LEU VAL ASN PHE THR LEU ASN LYS LEU ILE SEQRES 19 B 501 HIS ARG GLY PHE THR PRO MET THR VAL PRO ASP LEU LEU SEQRES 20 B 501 ARG GLY VAL VAL PHE GLU GLY CYS GLY MET THR PRO ASN SEQRES 21 B 501 ALA LYS PRO SER GLN ILE TYR ASN ILE ASP PRO SER ARG SEQRES 22 B 501 PHE GLU ASP LEU ASN LEU ALA GLY THR ALA GLU VAL GLY SEQRES 23 B 501 LEU ALA GLY TYR PHE MET ASP HIS SER VAL ALA PHE ARG SEQRES 24 B 501 ASP LEU PRO ILE ARG MET VAL CYS SER SER THR CYS TYR SEQRES 25 B 501 ARG ALA GLU THR ASP THR GLY LYS GLU PRO TRP GLY LEU SEQRES 26 B 501 TYR ARG VAL HIS HIS PHE THR LYS VAL GLU MET PHE GLY SEQRES 27 B 501 VAL THR GLY PRO GLY LEU GLU GLN SER SER GLU LEU LEU SEQRES 28 B 501 GLU GLU PHE LEU SER LEU GLN MET GLU ILE LEU THR GLU SEQRES 29 B 501 LEU GLY LEU HIS PHE ARG VAL LEU ASP MET PRO THR GLN SEQRES 30 B 501 GLU LEU GLY LEU PRO ALA TYR ARG LYS PHE ASP ILE GLU SEQRES 31 B 501 ALA TRP MET PRO GLY ARG GLY ARG PHE GLY GLU VAL THR SEQRES 32 B 501 SER ALA SER ASN CYS THR ASP PHE GLN SER ARG ARG LEU SEQRES 33 B 501 HIS ILE MET PHE GLN THR GLU ALA GLY GLU LEU GLN PHE SEQRES 34 B 501 ALA HIS THR VAL ASN ALA THR GLY CYS ALA VAL PRO ARG SEQRES 35 B 501 LEU LEU ILE ALA LEU LEU GLU SER TYR GLN GLN LYS ASP SEQRES 36 B 501 GLY SER VAL LEU VAL PRO PRO ALA LEU GLN PRO TYR LEU SEQRES 37 B 501 GLY THR ASP ARG ILE THR THR PRO THR HIS VAL PRO LEU SEQRES 38 B 501 GLN TYR ILE GLY PRO ASN GLN PRO GLN LYS PRO ARG LEU SEQRES 39 B 501 PRO GLY GLN PRO ALA SER SER HET SRP A 900 29 HET SRP B 901 29 HETNAM SRP SERYL ADENYLATE FORMUL 3 SRP 2(C13 H19 N6 O9 P) FORMUL 5 HOH *611(H2 O) HELIX 1 1 ASN A 25 GLU A 33 1 9 HELIX 2 2 ASP A 42 TYR A 49 1 8 HELIX 3 3 TYR A 49 LYS A 61 1 13 HELIX 4 4 ARG A 65 LYS A 67 5 3 HELIX 5 5 ASP A 68 ASP A 108 1 41 HELIX 6 6 GLN A 111 GLN A 114 5 4 HELIX 7 7 ASP A 115 LEU A 151 1 37 HELIX 8 8 ASP A 165 ALA A 169 5 5 HELIX 9 9 GLY A 187 LEU A 195 1 9 HELIX 10 10 GLY A 216 ARG A 236 1 21 HELIX 11 11 ARG A 248 GLY A 256 1 9 HELIX 12 12 THR A 282 MET A 292 1 11 HELIX 13 13 ARG A 299 LEU A 301 5 3 HELIX 14 14 GLY A 343 LEU A 365 1 23 HELIX 15 15 PRO A 375 LEU A 379 5 5 HELIX 16 16 ASP A 410 HIS A 417 1 8 HELIX 17 17 VAL A 440 GLN A 452 1 13 HELIX 18 18 PRO A 461 ALA A 463 5 3 HELIX 19 19 LEU A 464 GLY A 469 1 6 HELIX 20 20 ASN B 25 GLU B 33 1 9 HELIX 21 21 ASP B 42 TYR B 49 1 8 HELIX 22 22 TYR B 49 LYS B 61 1 13 HELIX 23 23 ARG B 65 LYS B 67 5 3 HELIX 24 24 ASP B 68 THR B 97 1 30 HELIX 25 25 THR B 97 ALA B 102 1 6 HELIX 26 26 GLN B 111 ASP B 115 5 5 HELIX 27 27 GLY B 125 LEU B 151 1 27 HELIX 28 28 ASP B 165 ALA B 169 5 5 HELIX 29 29 GLY B 187 LEU B 195 1 9 HELIX 30 30 GLY B 216 ARG B 236 1 21 HELIX 31 31 ARG B 248 GLY B 256 1 9 HELIX 32 32 THR B 282 MET B 292 1 11 HELIX 33 33 ARG B 299 LEU B 301 5 3 HELIX 34 34 GLY B 343 LEU B 365 1 23 HELIX 35 35 PRO B 375 LEU B 379 5 5 HELIX 36 36 ASP B 410 HIS B 417 1 8 HELIX 37 37 VAL B 440 GLN B 452 1 13 HELIX 38 38 PRO B 461 ALA B 463 5 3 HELIX 39 39 LEU B 464 GLY B 469 1 6 SHEET 1 A10 ARG A 170 VAL A 175 0 SHEET 2 A10 PHE A 369 ASP A 373 -1 O VAL A 371 N HIS A 173 SHEET 3 A10 ARG A 385 MET A 393 -1 O ASP A 388 N LEU A 372 SHEET 4 A10 ARG A 398 ASN A 407 -1 O VAL A 402 N ILE A 389 SHEET 5 A10 HIS A 431 ALA A 439 -1 O ASN A 434 N SER A 406 SHEET 6 A10 HIS A 330 THR A 340 -1 N GLY A 338 O VAL A 433 SHEET 7 A10 ILE A 303 TYR A 312 -1 N CYS A 311 O PHE A 331 SHEET 8 A10 THR A 239 THR A 242 1 N THR A 239 O ARG A 304 SHEET 9 A10 TYR B 213 ARG B 215 -1 O LEU B 214 N THR A 242 SHEET 10 A10 ILE B 198 ARG B 199 -1 N ARG B 199 O TYR B 213 SHEET 1 B10 ILE A 198 ARG A 199 0 SHEET 2 B10 TYR A 213 ARG A 215 -1 O TYR A 213 N ARG A 199 SHEET 3 B10 THR B 239 THR B 242 -1 O THR B 242 N LEU A 214 SHEET 4 B10 ILE B 303 TYR B 312 1 O ARG B 304 N THR B 239 SHEET 5 B10 HIS B 330 THR B 340 -1 O PHE B 331 N CYS B 311 SHEET 6 B10 HIS B 431 ALA B 439 -1 O VAL B 433 N GLY B 338 SHEET 7 B10 ARG B 398 ASN B 407 -1 N SER B 406 O ASN B 434 SHEET 8 B10 ARG B 385 MET B 393 -1 N ILE B 389 O VAL B 402 SHEET 9 B10 PHE B 369 ASP B 373 -1 N LEU B 372 O ASP B 388 SHEET 10 B10 ARG B 170 VAL B 175 -1 N VAL B 175 O PHE B 369 SHEET 1 C 2 LEU A 246 LEU A 247 0 SHEET 2 C 2 ASN A 278 LEU A 279 -1 O ASN A 278 N LEU A 247 SHEET 1 D 4 LEU A 427 PHE A 429 0 SHEET 2 D 4 MET A 419 GLN A 421 -1 N PHE A 420 O GLN A 428 SHEET 3 D 4 HIS A 294 ALA A 297 1 N VAL A 296 O GLN A 421 SHEET 4 D 4 GLN B 482 TYR B 483 -1 O GLN B 482 N SER A 295 SHEET 1 E 2 VAL A 458 LEU A 459 0 SHEET 2 E 2 ARG A 472 ILE A 473 -1 O ILE A 473 N VAL A 458 SHEET 1 F 4 GLN A 482 TYR A 483 0 SHEET 2 F 4 HIS B 294 ALA B 297 -1 O SER B 295 N GLN A 482 SHEET 3 F 4 MET B 419 GLN B 421 1 O GLN B 421 N VAL B 296 SHEET 4 F 4 LEU B 427 PHE B 429 -1 O GLN B 428 N PHE B 420 SHEET 1 G 2 LEU B 246 LEU B 247 0 SHEET 2 G 2 ASN B 278 LEU B 279 -1 O ASN B 278 N LEU B 247 SHEET 1 H 2 VAL B 458 LEU B 459 0 SHEET 2 H 2 ARG B 472 ILE B 473 -1 O ILE B 473 N VAL B 458 CISPEP 1 LEU A 301 PRO A 302 0 -0.02 CISPEP 2 LEU B 301 PRO B 302 0 -0.38 SITE 1 AC1 20 THR A 282 GLU A 284 ARG A 313 GLU A 315 SITE 2 AC1 20 TYR A 326 ARG A 327 VAL A 328 PHE A 331 SITE 3 AC1 20 GLU A 335 GLU A 401 VAL A 402 THR A 403 SITE 4 AC1 20 SER A 404 ASN A 434 THR A 436 ALA A 439 SITE 5 AC1 20 HOH A 902 HOH A 954 HOH A1040 HOH A1134 SITE 1 AC2 18 THR B 282 GLU B 284 ARG B 313 GLU B 315 SITE 2 AC2 18 TYR B 326 ARG B 327 VAL B 328 PHE B 331 SITE 3 AC2 18 GLU B 335 GLU B 401 VAL B 402 THR B 403 SITE 4 AC2 18 SER B 404 ASN B 434 THR B 436 ALA B 439 SITE 5 AC2 18 HOH B 905 HOH B1014 CRYST1 79.864 230.350 135.590 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012521 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007375 0.00000