HEADER HYDROLASE 08-JUL-04 1WMD
TITLE CRYSTAL STRUCTURE OF ALKALINE SERINE PROTEASE KP-43 FROM BACILLUS SP.
TITLE 2 KSM-KP43 (1.30 ANGSTROM, 100 K)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROTEASE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 1-434;
COMPND 5 SYNONYM: ALKALINE SERINE PROTEASE;
COMPND 6 EC: 3.4.21.-
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP.;
SOURCE 3 ORGANISM_TAXID: 109322;
SOURCE 4 STRAIN: KSM-KP43
KEYWDS ALPHA-BETA HYDROLASE FOLD, JELLY-ROLL BETA-BARREL, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR T.NONAKA,M.FUJIHASHI,A.KITA,K.SAEKI,S.ITO,K.HORIKOSHI,K.MIKI
REVDAT 5 13-MAR-24 1WMD 1 REMARK LINK
REVDAT 4 13-JUL-11 1WMD 1 VERSN
REVDAT 3 24-FEB-09 1WMD 1 VERSN
REVDAT 2 16-NOV-04 1WMD 1 JRNL
REVDAT 1 14-SEP-04 1WMD 0
JRNL AUTH T.NONAKA,M.FUJIHASHI,A.KITA,K.SAEKI,S.ITO,K.HORIKOSHI,K.MIKI
JRNL TITL THE CRYSTAL STRUCTURE OF AN OXIDATIVELY STABLE
JRNL TITL 2 SUBTILISIN-LIKE ALKALINE SERINE PROTEASE, KP-43, WITH A
JRNL TITL 3 C-TERMINAL {BETA}-BARREL DOMAIN
JRNL REF J.BIOL.CHEM. V. 279 47344 2004
JRNL REFN ISSN 0021-9258
JRNL PMID 15342641
JRNL DOI 10.1074/JBC.M409089200
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH T.NONAKA,M.FUJIHASHI,A.KITA,K.SAEKI,S.ITO,K.MIKI
REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF
REMARK 1 TITL 2 A NOVEL ALKALINE SERINE PROTEASE (KP-43) FROM ALKALIPHILIC
REMARK 1 TITL 3 BACILLUS SP. STRAIN KSM-KP43
REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 57 717 2001
REMARK 1 REFN ISSN 0907-4449
REMARK 1 PMID 11320315
REMARK 1 DOI 10.1107/S0907444901002566
REMARK 2
REMARK 2 RESOLUTION. 1.30 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : SHELXL-97
REMARK 3 AUTHORS : G.M.SHELDRICK
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF).
REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL
REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.134
REMARK 3 FREE R VALUE (NO CUTOFF) : 0.169
REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 4.998
REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 4720
REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 94436
REMARK 3
REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F).
REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL
REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.130
REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.164
REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.007
REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 4456
REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 88987
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3194
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 32
REMARK 3 SOLVENT ATOMS : 458
REMARK 3
REMARK 3 MODEL REFINEMENT.
REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 3666.6
REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00
REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 23
REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 34075
REMARK 3 NUMBER OF RESTRAINTS : 42340
REMARK 3
REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES.
REMARK 3 BOND LENGTHS (A) : 0.015
REMARK 3 ANGLE DISTANCES (A) : 0.029
REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.009
REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.030
REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.071
REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.073
REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.025
REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.004
REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.030
REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.076
REMARK 3
REMARK 3 BULK SOLVENT MODELING.
REMARK 3 METHOD USED: NULL
REMARK 3
REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER
REMARK 3 SPECIAL CASE: NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: WATER MOLECULES FROM HOH 3458 TO 3461
REMARK 3 ARE RELATED TO MULTI-CONFORMATIONAL ASN A 1. WATER MOLECULE HOH
REMARK 3 4446 IS RELATED TO MULTI-CONFORMATIONAL ASN A 153.
REMARK 4
REMARK 4 1WMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUL-04.
REMARK 100 THE DEPOSITION ID IS D_1000023739.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 28-MAY-01
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.3
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SPRING-8
REMARK 200 BEAMLINE : BL40B2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.85
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR
REMARK 200 OPTICS : RHODIUM COATED BENT-CYLINDER
REMARK 200 MIRROR
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94791
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300
REMARK 200 RESOLUTION RANGE LOW (A) : 100.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0
REMARK 200 DATA REDUNDANCY : 4.799
REMARK 200 R MERGE (I) : 0.05300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.7610
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.28300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.091
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS
REMARK 200 SOFTWARE USED: CNS
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 32.30
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES-NAOH PH 7.3, 1.7M AMMONIUM
REMARK 280 SULFATE, 10MM CALCIUM CHLORIDE, 10% (V/V) 1,4-DIOXANE, VAPOR
REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -X,Y,-Z+1/2
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.45600
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.45600
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.42000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.51800
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.42000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.51800
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.45600
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.42000
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.51800
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.45600
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.42000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.51800
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 5 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES
REMARK 500 TYR A 17 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES
REMARK 500 TYR A 17 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES
REMARK 500 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES
REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES
REMARK 500 PHE A 94 CB - CG - CD2 ANGL. DEV. = 5.9 DEGREES
REMARK 500 PHE A 94 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES
REMARK 500 ARG A 143 CD - NE - CZ ANGL. DEV. = 12.6 DEGREES
REMARK 500 ARG A 143 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES
REMARK 500 ARG A 276 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES
REMARK 500 ARG A 276 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES
REMARK 500 TYR A 389 CB - CG - CD2 ANGL. DEV. = 4.5 DEGREES
REMARK 500 ARG A 396 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 30 -169.37 -160.34
REMARK 500 ASP A 34 -117.62 39.80
REMARK 500 LEU A 77 17.84 -152.58
REMARK 500 HIS A 244 -66.36 -136.39
REMARK 500 ASN A 322 67.68 -113.13
REMARK 500 SER A 330 -7.75 85.28
REMARK 500 VAL A 365 -60.20 -100.52
REMARK 500 ASN A 420 110.32 -161.16
REMARK 500 VAL A 423 75.04 -119.78
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A1001 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU A 186 OE1
REMARK 620 2 GLU A 186 OE2 53.4
REMARK 620 3 SER A 194 O 83.8 87.2
REMARK 620 4 ASP A 197 OD1 127.5 74.7 86.7
REMARK 620 5 HIS A 201 ND1 93.5 92.0 177.0 95.9
REMARK 620 6 HOH A3001 O 159.5 147.0 94.5 72.5 87.7
REMARK 620 7 HOH A3002 O 81.6 134.9 92.1 150.3 86.4 78.0
REMARK 620 N 1 2 3 4 5 6
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A1003 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 367 OD1
REMARK 620 2 LEU A 368 O 84.5
REMARK 620 3 ASP A 369 OD1 92.8 87.2
REMARK 620 4 ASP A 394 O 97.3 174.4 87.4
REMARK 620 5 GLU A 400 OE2 167.1 85.9 95.3 93.0
REMARK 620 6 HOH A3004 O 87.6 107.5 165.2 77.9 87.2
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A1002 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 384 OD2
REMARK 620 2 ASP A 384 OD1 53.2
REMARK 620 3 THR A 386 OG1 126.8 77.0
REMARK 620 4 THR A 386 O 112.0 79.5 70.6
REMARK 620 5 PRO A 388 O 81.9 108.9 137.8 69.7
REMARK 620 6 ASP A 391 OD1 76.1 126.7 135.7 142.1 75.3
REMARK 620 7 ASN A 392 OD1 84.6 84.2 71.4 141.1 149.2 74.6
REMARK 620 8 HOH A3003 O 149.0 155.3 78.3 92.4 89.6 72.9 87.9
REMARK 620 N 1 2 3 4 5 6 7
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 2001
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 2002
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2101
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2102
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1WME RELATED DB: PDB
REMARK 900 THE SAME PROTEIN AT 1.50 ANGSTROM AT ROOM TEMPERATURE
REMARK 900 RELATED ID: 1WMF RELATED DB: PDB
REMARK 900 THE OXIDIZED FORM AT 1.73 ANGSTROM
DBREF 1WMD A 1 434 UNP Q93UV9 Q93UV9_9BACI 207 640
SEQRES 1 A 434 ASN ASP VAL ALA ARG GLY ILE VAL LYS ALA ASP VAL ALA
SEQRES 2 A 434 GLN SER SER TYR GLY LEU TYR GLY GLN GLY GLN ILE VAL
SEQRES 3 A 434 ALA VAL ALA ASP THR GLY LEU ASP THR GLY ARG ASN ASP
SEQRES 4 A 434 SER SER MET HIS GLU ALA PHE ARG GLY LYS ILE THR ALA
SEQRES 5 A 434 LEU TYR ALA LEU GLY ARG THR ASN ASN ALA ASN ASP THR
SEQRES 6 A 434 ASN GLY HIS GLY THR HIS VAL ALA GLY SER VAL LEU GLY
SEQRES 7 A 434 ASN GLY SER THR ASN LYS GLY MET ALA PRO GLN ALA ASN
SEQRES 8 A 434 LEU VAL PHE GLN SER ILE MET ASP SER GLY GLY GLY LEU
SEQRES 9 A 434 GLY GLY LEU PRO SER ASN LEU GLN THR LEU PHE SER GLN
SEQRES 10 A 434 ALA TYR SER ALA GLY ALA ARG ILE HIS THR ASN SER TRP
SEQRES 11 A 434 GLY ALA ALA VAL ASN GLY ALA TYR THR THR ASP SER ARG
SEQRES 12 A 434 ASN VAL ASP ASP TYR VAL ARG LYS ASN ASP MET THR ILE
SEQRES 13 A 434 LEU PHE ALA ALA GLY ASN GLU GLY PRO ASN GLY GLY THR
SEQRES 14 A 434 ILE SER ALA PRO GLY THR ALA LYS ASN ALA ILE THR VAL
SEQRES 15 A 434 GLY ALA THR GLU ASN LEU ARG PRO SER PHE GLY SER TYR
SEQRES 16 A 434 ALA ASP ASN ILE ASN HIS VAL ALA GLN PHE SER SER ARG
SEQRES 17 A 434 GLY PRO THR LYS ASP GLY ARG ILE LYS PRO ASP VAL MET
SEQRES 18 A 434 ALA PRO GLY THR PHE ILE LEU SER ALA ARG SER SER LEU
SEQRES 19 A 434 ALA PRO ASP SER SER PHE TRP ALA ASN HIS ASP SER LYS
SEQRES 20 A 434 TYR ALA TYR MET GLY GLY THR SER MET ALA THR PRO ILE
SEQRES 21 A 434 VAL ALA GLY ASN VAL ALA GLN LEU ARG GLU HIS PHE VAL
SEQRES 22 A 434 LYS ASN ARG GLY ILE THR PRO LYS PRO SER LEU LEU LYS
SEQRES 23 A 434 ALA ALA LEU ILE ALA GLY ALA ALA ASP ILE GLY LEU GLY
SEQRES 24 A 434 TYR PRO ASN GLY ASN GLN GLY TRP GLY ARG VAL THR LEU
SEQRES 25 A 434 ASP LYS SER LEU ASN VAL ALA TYR VAL ASN GLU SER SER
SEQRES 26 A 434 SER LEU SER THR SER GLN LYS ALA THR TYR SER PHE THR
SEQRES 27 A 434 ALA THR ALA GLY LYS PRO LEU LYS ILE SER LEU VAL TRP
SEQRES 28 A 434 SER ASP ALA PRO ALA SER THR THR ALA SER VAL THR LEU
SEQRES 29 A 434 VAL ASN ASP LEU ASP LEU VAL ILE THR ALA PRO ASN GLY
SEQRES 30 A 434 THR GLN TYR VAL GLY ASN ASP PHE THR SER PRO TYR ASN
SEQRES 31 A 434 ASP ASN TRP ASP GLY ARG ASN ASN VAL GLU ASN VAL PHE
SEQRES 32 A 434 ILE ASN ALA PRO GLN SER GLY THR TYR THR ILE GLU VAL
SEQRES 33 A 434 GLN ALA TYR ASN VAL PRO VAL GLY PRO GLN THR PHE SER
SEQRES 34 A 434 LEU ALA ILE VAL ASN
HET CA A1001 1
HET CA A1002 1
HET CA A1003 1
HET SO4 A2201 5
HET DIO A2001 6
HET DIO A2002 6
HET GOL A2101 6
HET GOL A2102 6
HETNAM CA CALCIUM ION
HETNAM SO4 SULFATE ION
HETNAM DIO 1,4-DIETHYLENE DIOXIDE
HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 CA 3(CA 2+)
FORMUL 5 SO4 O4 S 2-
FORMUL 6 DIO 2(C4 H8 O2)
FORMUL 8 GOL 2(C3 H8 O3)
FORMUL 10 HOH *458(H2 O)
HELIX 1 1 ASN A 1 VAL A 8 1 8
HELIX 2 2 LYS A 9 GLY A 18 1 10
HELIX 3 3 GLY A 67 GLY A 78 1 12
HELIX 4 4 ASN A 110 ALA A 121 1 12
HELIX 5 5 THR A 139 ASN A 152 1 14
HELIX 6 6 ARG A 189 ASP A 197 5 9
HELIX 7 7 PRO A 236 PHE A 240 5 5
HELIX 8 8 GLY A 253 ARG A 276 1 24
HELIX 9 9 LYS A 281 ALA A 293 1 13
HELIX 10 10 THR A 311 ASN A 317 1 7
SHEET 1 A 7 ILE A 50 ALA A 55 0
SHEET 2 A 7 ASN A 91 SER A 96 1 O SER A 96 N TYR A 54
SHEET 3 A 7 ILE A 25 ASP A 30 1 N VAL A 28 O GLN A 95
SHEET 4 A 7 ILE A 125 ASN A 128 1 O ILE A 125 N ALA A 27
SHEET 5 A 7 THR A 155 ALA A 159 1 O THR A 155 N HIS A 126
SHEET 6 A 7 ILE A 180 THR A 185 1 O ILE A 180 N ILE A 156
SHEET 7 A 7 VAL A 220 PRO A 223 1 O VAL A 220 N GLY A 183
SHEET 1 B 3 ILE A 227 ALA A 230 0
SHEET 2 B 3 TYR A 248 MET A 251 -1 O MET A 251 N ILE A 227
SHEET 3 B 3 ALA A 242 ASP A 245 -1 N ALA A 242 O TYR A 250
SHEET 1 C 4 ALA A 319 LEU A 327 0
SHEET 2 C 4 GLN A 426 VAL A 433 -1 O GLN A 426 N LEU A 327
SHEET 3 C 4 LEU A 345 VAL A 350 -1 N VAL A 350 O SER A 429
SHEET 4 C 4 VAL A 399 ILE A 404 -1 O ILE A 404 N LEU A 345
SHEET 1 D 4 LYS A 332 ALA A 339 0
SHEET 2 D 4 GLY A 410 ASN A 420 -1 O ILE A 414 N TYR A 335
SHEET 3 D 4 ASP A 367 THR A 373 -1 N ASP A 367 O ASN A 420
SHEET 4 D 4 GLN A 379 VAL A 381 -1 O TYR A 380 N ILE A 372
LINK OE1 GLU A 186 CA CA A1001 1555 1555 2.43
LINK OE2 GLU A 186 CA CA A1001 1555 1555 2.43
LINK O SER A 194 CA CA A1001 1555 1555 2.27
LINK OD1 ASP A 197 CA CA A1001 1555 1555 2.37
LINK ND1 HIS A 201 CA CA A1001 1555 1555 2.55
LINK OD1 ASP A 367 CA CA A1003 1555 1555 2.29
LINK O LEU A 368 CA CA A1003 1555 1555 2.36
LINK OD1 ASP A 369 CA CA A1003 1555 1555 2.28
LINK OD2 ASP A 384 CA CA A1002 1555 1555 2.51
LINK OD1 ASP A 384 CA CA A1002 1555 1555 2.37
LINK OG1 THR A 386 CA CA A1002 1555 1555 2.59
LINK O THR A 386 CA CA A1002 1555 1555 2.31
LINK O PRO A 388 CA CA A1002 1555 1555 2.46
LINK OD1 ASP A 391 CA CA A1002 1555 1555 2.31
LINK OD1 ASN A 392 CA CA A1002 1555 1555 2.45
LINK O ASP A 394 CA CA A1003 1555 1555 2.33
LINK OE2 GLU A 400 CA CA A1003 1555 1555 2.27
LINK CA CA A1001 O HOH A3001 1555 1555 2.40
LINK CA CA A1001 O HOH A3002 1555 1555 2.37
LINK CA CA A1002 O HOH A3003 1555 1555 2.42
LINK CA CA A1003 O HOH A3004 1555 1555 2.36
CISPEP 1 GLY A 164 PRO A 165 0 5.85
CISPEP 2 ALA A 172 PRO A 173 0 4.95
CISPEP 3 GLY A 209 PRO A 210 0 -1.73
CISPEP 4 LYS A 217 PRO A 218 0 -5.19
CISPEP 5 TYR A 300 PRO A 301 0 -13.17
CISPEP 6 SER A 387 PRO A 388 0 -6.07
CISPEP 7 GLY A 424 PRO A 425 0 -6.04
SITE 1 AC1 6 GLU A 186 SER A 194 ASP A 197 HIS A 201
SITE 2 AC1 6 HOH A3001 HOH A3002
SITE 1 AC2 6 ASP A 384 THR A 386 PRO A 388 ASP A 391
SITE 2 AC2 6 ASN A 392 HOH A3003
SITE 1 AC3 6 ASP A 367 LEU A 368 ASP A 369 ASP A 394
SITE 2 AC3 6 GLU A 400 HOH A3004
SITE 1 AC4 4 ARG A 5 ASP A 11 SER A 15 HOH A3200
SITE 1 AC5 5 SER A 129 TRP A 130 GLY A 131 ALA A 159
SITE 2 AC5 5 SER A 255
SITE 1 AC6 3 PHE A 205 TRP A 241 GLY A 252
SITE 1 AC7 7 ASN A 135 GLU A 163 ALA A 319 TYR A 320
SITE 2 AC7 7 HOH A3151 HOH A3192 HOH A3266
SITE 1 AC8 5 ASP A 197 ARG A 208 ASN A 304 HOH A3107
SITE 2 AC8 5 HOH A3126
CRYST1 42.840 109.036 166.912 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.023343 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009171 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005991 0.00000