HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-AUG-04 1WOT TITLE STRUCTURE OF PUTATIVE MINIMAL NUCLEOTIDYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE MINIMAL NUCLEOTIDYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ALPHA AND BETA, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.SUZUKI,H.HATANAKA,T.HONDOH,A.OKUMURA,Y.KURODA,S.KURAMITSU, AUTHOR 2 T.SHIBATA,Y.INOUE,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WOT 1 REMARK REVDAT 2 24-FEB-09 1WOT 1 VERSN REVDAT 1 07-SEP-04 1WOT 0 SPRSDE 07-SEP-04 1WOT 1J0L JRNL AUTH S.SUZUKI,H.HATANAKA,T.HONDOH,A.OKUMURA,Y.KURODA,S.KURAMITSU, JRNL AUTH 2 T.SHIBATA,Y.INOUE,S.YOKOYAMA JRNL TITL STRUCTURE OF PUTATIVE MINIMAL NUCLEOTIDYLTRANSFERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WOT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023826. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20MM NAPI, 100MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_ 15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, VNMR 6.1B, CYANA REMARK 210 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 9 H VAL A 13 1.43 REMARK 500 O VAL A 88 H ALA A 92 1.54 REMARK 500 O LEU A 6 H ARG A 10 1.57 REMARK 500 O HIS A 57 H LYS A 61 1.57 REMARK 500 O VAL A 13 H CYS A 17 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A -1 154.47 68.80 REMARK 500 1 HIS A 0 7.63 90.21 REMARK 500 1 ALA A 36 114.59 169.76 REMARK 500 1 GLU A 49 -155.70 -66.82 REMARK 500 1 ARG A 78 -73.60 -58.88 REMARK 500 1 LEU A 80 -175.66 -55.40 REMARK 500 2 HIS A 0 98.34 -173.10 REMARK 500 2 MET A 1 86.96 -176.37 REMARK 500 2 ALA A 36 105.95 -175.68 REMARK 500 2 ARG A 37 160.05 -40.58 REMARK 500 2 ARG A 71 140.18 -38.75 REMARK 500 2 LEU A 80 178.87 -55.73 REMARK 500 3 HIS A 0 137.96 -171.76 REMARK 500 3 ALA A 36 91.62 170.66 REMARK 500 3 ARG A 37 -174.80 -52.06 REMARK 500 3 GLU A 49 -174.38 -65.59 REMARK 500 4 HIS A 0 19.92 -148.50 REMARK 500 4 ALA A 36 109.65 169.69 REMARK 500 4 ARG A 37 -172.31 -59.87 REMARK 500 4 GLU A 49 -171.35 -53.71 REMARK 500 4 ALA A 92 158.09 -39.75 REMARK 500 5 MET A 1 97.48 54.49 REMARK 500 5 ARG A 24 49.64 -83.34 REMARK 500 5 ALA A 36 111.14 -175.64 REMARK 500 5 ARG A 37 160.64 -40.81 REMARK 500 5 GLU A 49 -172.22 -61.18 REMARK 500 5 GLU A 77 -30.16 -38.40 REMARK 500 6 SER A -1 79.97 40.54 REMARK 500 6 HIS A 0 137.30 -178.04 REMARK 500 6 GLU A 49 -156.72 -61.69 REMARK 500 7 SER A -1 86.63 39.41 REMARK 500 7 HIS A 0 133.05 -175.40 REMARK 500 7 MET A 1 111.31 -178.38 REMARK 500 7 VAL A 23 -47.84 -139.03 REMARK 500 7 ARG A 24 58.64 -69.31 REMARK 500 7 ALA A 36 104.31 169.34 REMARK 500 7 ARG A 37 -166.12 -63.25 REMARK 500 7 ASP A 39 22.14 -151.30 REMARK 500 7 GLU A 49 -143.75 -79.63 REMARK 500 7 LEU A 80 172.64 -56.29 REMARK 500 8 SER A -1 76.76 44.72 REMARK 500 8 HIS A 0 130.70 -171.23 REMARK 500 8 MET A 1 105.17 165.96 REMARK 500 8 ALA A 36 161.32 162.32 REMARK 500 8 ASP A 41 173.46 52.07 REMARK 500 8 GLU A 49 -168.16 -63.02 REMARK 500 8 LEU A 80 -177.74 -62.31 REMARK 500 9 SER A -1 83.56 54.54 REMARK 500 9 HIS A 0 119.86 -172.53 REMARK 500 9 ALA A 36 109.07 162.07 REMARK 500 REMARK 500 THIS ENTRY HAS 127 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J0L RELATED DB: PDB REMARK 900 THE COORDINATES IN THIS ENTRY 1WOT ARE ESSENTIALLY THE SAME AS REMARK 900 THOSE IN THE ENTRY 1J0L, EXCEPT THAT THE ENSEMBLE OF NMR MODELS IN REMARK 900 1J0L WAS NOT SUPERIMPOSED BY MISTAKE. REMARK 900 RELATED ID: TTK003001464.1 RELATED DB: TARGETDB DBREF 1WOT A 1 95 UNP P83814 P83814_THETH 1 95 SEQRES 1 A 98 GLY SER HIS MET ASP LEU GLU THR LEU ARG ALA ARG ARG SEQRES 2 A 98 GLU ALA VAL LEU SER LEU CYS ALA ARG HIS GLY ALA VAL SEQRES 3 A 98 ARG VAL ARG VAL PHE GLY SER VAL ALA ARG GLY GLU ALA SEQRES 4 A 98 ARG GLU ASP SER ASP LEU ASP LEU LEU VAL ALA PHE GLU SEQRES 5 A 98 GLU GLY ARG THR LEU LEU ASP HIS ALA ARG LEU LYS LEU SEQRES 6 A 98 ALA LEU GLU GLY LEU LEU GLY VAL ARG VAL ASP ILE VAL SEQRES 7 A 98 SER GLU ARG GLY LEU ALA PRO ARG LEU ARG GLU GLN VAL SEQRES 8 A 98 LEU ARG GLU ALA ILE PRO LEU HELIX 1 1 ASP A 2 GLY A 21 1 20 HELIX 2 2 GLY A 29 GLY A 34 1 6 HELIX 3 3 THR A 53 GLY A 69 1 17 HELIX 4 4 ALA A 81 ALA A 92 1 12 SHEET 1 A 4 VAL A 72 SER A 76 0 SHEET 2 A 4 LEU A 42 ALA A 47 1 N LEU A 42 O ASP A 73 SHEET 3 A 4 ARG A 24 VAL A 27 -1 N ARG A 26 O LEU A 45 SHEET 4 A 4 ILE A 93 PRO A 94 -1 O ILE A 93 N VAL A 27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1