HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 03-SEP-04 1WPI TITLE SOLUTION NMR STRUCTURE OF PROTEIN YKR049C FROM SACCHAROMYCES TITLE 2 CEREVISIAE. ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS TARGET TITLE 3 YST0250_1_133; NORTHEAST STRUCTURAL GENOMICS CONSORTIUM YTYST250 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL 15.6 KDA PROTEIN IN NAP1-TRK2 INTERGENIC COMPND 3 REGION; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: YKR049C; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: YKR049C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS STRUCTURAL GENOMICS, OCSP, NESG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.W.JUNG,A.YEE,C.H.ARROWSMITH,W.LEE,NORTHEAST STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (NESG) REVDAT 5 29-MAY-24 1WPI 1 REMARK REVDAT 4 02-MAR-22 1WPI 1 REMARK REVDAT 3 24-FEB-09 1WPI 1 VERSN REVDAT 2 24-OCT-06 1WPI 1 AUTHOR JRNL KEYWDS REMARK REVDAT 1 13-SEP-05 1WPI 0 JRNL AUTH J.W.JUNG,A.YEE,B.WU,C.H.ARROWSMITH,W.LEE JRNL TITL SOLUTION STRUCTURE OF YKR049C, A PUTATIVE REDOX PROTEIN FROM JRNL TITL 2 SACCHAROMYCES CEREVISIAE JRNL REF J.BIOCHEM.MOL.BIOL. V. 38 550 2005 JRNL REFN ISSN 1225-8687 JRNL PMID 16202234 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.6, CYANA 1.0.6 REMARK 3 AUTHORS : GUENTERT (CYANA), GUENTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WPI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000023851. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.35 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM YKR049C U-15M, 13C; 50MM REMARK 210 PHOSPHATE BUFFER; 350MM NACL, REMARK 210 1MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; INOVA; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, XWINNMR 3.5, SPAKRY REMARK 210 3.110 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS/CANDID REMARK 210 METHOD REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 77 H LEU A 81 1.14 REMARK 500 HB3 ASP A 87 HD2 PRO A 88 1.31 REMARK 500 O LYS A 84 H ASP A 87 1.33 REMARK 500 O LEU A 94 H VAL A 98 1.52 REMARK 500 O LEU A 56 H ARG A 60 1.54 REMARK 500 HZ2 LYS A 29 O GLU A 107 1.56 REMARK 500 OD2 ASP A 112 H ASN A 115 1.56 REMARK 500 H ASP A 112 O LEU A 117 1.60 REMARK 500 O LEU A 77 N LEU A 81 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 87.21 62.27 REMARK 500 1 THR A 6 89.02 34.08 REMARK 500 1 ARG A 9 88.79 57.44 REMARK 500 1 PRO A 11 -161.87 -74.98 REMARK 500 1 ARG A 12 -53.71 -147.31 REMARK 500 1 ASN A 19 57.03 -152.40 REMARK 500 1 ASP A 20 158.62 57.54 REMARK 500 1 ILE A 21 -93.92 -173.86 REMARK 500 1 ALA A 22 -148.17 -132.18 REMARK 500 1 SER A 23 -84.24 -29.51 REMARK 500 1 LYS A 29 -81.56 -59.31 REMARK 500 1 LYS A 35 6.89 -62.99 REMARK 500 1 ASP A 37 -144.29 -60.17 REMARK 500 1 HIS A 40 -170.67 151.74 REMARK 500 1 ARG A 41 -44.08 77.29 REMARK 500 1 GLN A 57 -33.22 -38.06 REMARK 500 1 SER A 62 49.46 -84.31 REMARK 500 1 CYS A 63 144.29 -174.27 REMARK 500 1 LYS A 82 -101.35 -118.81 REMARK 500 1 LYS A 84 -139.88 -62.05 REMARK 500 1 HIS A 85 -34.49 -27.46 REMARK 500 1 ASP A 87 -157.79 -39.06 REMARK 500 1 MET A 92 -97.73 -27.52 REMARK 500 1 GLN A 99 -25.73 -39.64 REMARK 500 1 ARG A 100 -17.76 156.31 REMARK 500 1 LEU A 102 -77.58 0.38 REMARK 500 1 LYS A 106 47.62 -152.09 REMARK 500 1 LYS A 116 38.75 71.60 REMARK 500 1 ASN A 120 90.48 -69.66 REMARK 500 1 GLU A 121 148.10 168.06 REMARK 500 1 TYR A 128 -72.69 -82.93 REMARK 500 1 ILE A 130 -164.43 -61.52 REMARK 500 1 ARG A 132 24.20 -151.06 REMARK 500 2 PHE A 3 90.51 -165.35 REMARK 500 2 THR A 6 95.96 44.27 REMARK 500 2 LEU A 7 142.29 -177.38 REMARK 500 2 ARG A 9 108.14 55.32 REMARK 500 2 ASN A 19 62.11 -155.92 REMARK 500 2 ASP A 20 160.60 56.05 REMARK 500 2 ILE A 21 -88.81 -175.15 REMARK 500 2 ALA A 22 -132.63 -139.11 REMARK 500 2 SER A 23 -87.11 -43.01 REMARK 500 2 LYS A 29 -85.68 -47.88 REMARK 500 2 LYS A 35 -6.65 -58.83 REMARK 500 2 ASP A 37 93.68 -169.36 REMARK 500 2 SER A 39 -98.80 -168.68 REMARK 500 2 HIS A 40 71.11 162.05 REMARK 500 2 GLN A 57 -30.67 -35.90 REMARK 500 2 LYS A 76 70.86 51.66 REMARK 500 2 LEU A 81 1.07 -65.26 REMARK 500 REMARK 500 THIS ENTRY HAS 624 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: YTYST250 RELATED DB: TARGETDB DBREF 1WPI A 1 133 UNP P36141 YK29_YEAST 1 133 SEQRES 1 A 133 MET SER PHE TRP LYS THR LEU GLN ARG GLN PRO ARG THR SEQRES 2 A 133 ILE SER LEU PHE THR ASN ASP ILE ALA SER ASN ILE LYS SEQRES 3 A 133 SER GLN LYS CYS LEU GLN LEU LEU LYS GLY ASP VAL SER SEQRES 4 A 133 HIS ARG PHE ASP VAL GLU ILE ALA ASN ARG PHE PRO THR SEQRES 5 A 133 TRP ASP GLN LEU GLN TYR MET ARG THR SER CYS PRO GLN SEQRES 6 A 133 GLY PRO VAL SER LEU GLN ARG GLN ILE PRO LYS LEU ASP SEQRES 7 A 133 SER VAL LEU LYS TYR LYS HIS THR ASP PRO THR PHE GLY SEQRES 8 A 133 MET ASP LEU GLN LYS CYS VAL GLN ARG GLY LEU TRP ASN SEQRES 9 A 133 PRO LYS GLU ALA LEU TRP VAL ASP TRP GLU ASN LYS LEU SEQRES 10 A 133 VAL GLY ASN GLU PRO ALA ASP ILE ASP LYS TYR ILE ILE SEQRES 11 A 133 GLN ARG LYS HELIX 1 1 THR A 52 SER A 62 1 11 HELIX 2 2 GLN A 65 ILE A 74 1 10 HELIX 3 3 LYS A 76 LEU A 81 1 6 HELIX 4 4 LEU A 94 GLN A 99 1 6 HELIX 5 5 PRO A 122 ILE A 130 1 9 SHEET 1 A 4 ASP A 43 ASN A 48 0 SHEET 2 A 4 THR A 13 THR A 18 1 N LEU A 16 O ALA A 47 SHEET 3 A 4 LEU A 109 ASP A 112 -1 O LEU A 109 N PHE A 17 SHEET 4 A 4 VAL A 118 ASN A 120 -1 O GLY A 119 N TRP A 110 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1